GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:52:33

Sequence gi568815589r:91309349_91510734 : 201386 bp : 40.65% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.08 PlyA -   2025   2020    6                               1.05
 1.07 Term -   2438   2325  114  2  0   96   32    90 0.060   1.79
 1.06 Intr -  10309  10199  111  1  0   76   68    56 0.103   2.06
 1.05 Intr -  18303  18242   62  1  2  103   70    91 0.040   6.33
 1.04 Intr -  19212  19134   79  0  1   94   31   116 0.279   4.71
 1.03 Intr -  51567  51425  143  1  2   60   86    98 0.611   5.95
 1.02 Intr -  52417  52280  138  2  0   68   78    76 0.673   4.11
 1.01 Init -  52541  52463   79  2  1  111   35   142 0.889  10.50
 1.00 Prom -  61265  61226   40                              -4.55

 2.00 Prom +  61988  62027   40                              -5.95
 2.01 Init +  62030  62105   76  1  1   87   89    63 0.972   7.60
 2.02 Intr +  84434  84526   93  0  0   28   71   103 0.006   1.62
 2.03 Term +  90656  90930  275  0  2   68   32   192 0.790   6.25
 2.04 PlyA +  91180  91185    6                               1.05

 3.00 Prom +  93910  93949   40                              -6.75
 3.01 Sngl +  96442  96723  282  0  0   83   47   184 0.732   7.05
 3.02 PlyA +  99124  99129    6                               1.05

 4.02 PlyA -  99640  99635    6                               1.05
 4.01 Sngl - 101371  99998 1374  1  0   68   32  1494 0.970 137.65
 4.00 Prom - 110723 110684   40                              -7.45

 5.04 PlyA - 111082 111077    6                               1.05
 5.03 Term - 113871 113482  390  0  0   11   42   200 0.595   1.70
 5.02 Intr - 115554 115355  200  1  2   88   47   202 0.769  14.25
 5.01 Init - 115703 115592  112  2  1  103   15   141 0.802   8.72
 5.00 Prom - 117529 117490   40                              -5.05

 6.05 PlyA - 118221 118216    6                               1.05
 6.04 Term - 120496 120323  174  1  0   42   48   174 0.658   5.58
 6.03 Intr - 122668 122555  114  1  0   72   94    99 0.731   8.62
 6.02 Intr - 133673 133175  499  1  1   45   80   223 0.236   9.26
 6.01 Init - 159266 158848  419  2  2   71   53   172 0.239   7.95
 6.00 Prom - 159320 159281   40                              -5.65

 7.03 PlyA - 159437 159432    6                               1.05
 7.02 Term - 161106 160405  702  0  0   -3   32   262 0.105   4.03
 7.01 Init - 161919 161335  585  0  0   44   20   265 0.091  10.54
 7.00 Prom - 164847 164808   40                              -7.75

 8.02 PlyA - 165010 165005    6                               1.05
 8.01 Sngl - 169427 168846  582  2  0   46   47   349 0.453  22.53
 8.00 Prom - 170896 170857   40                              -7.05

 9.00 Prom + 173518 173557   40                              -6.05
 9.01 Init + 178749 179152  404  2  2   47   78   294 0.976  20.45
 9.02 Term + 179486 179597  112  2  1   50   47   136 0.864   2.75
 9.03 PlyA + 179892 179897    6                              -0.45

10.03 PlyA - 180498 180493    6                               1.05
10.02 Term - 182611 182346  266  2  2   91   39   204 0.956  10.49
10.01 Init - 185817 185685  133  0  1   82   42   152 0.840  10.35
10.00 Prom - 192052 192013   40                              -2.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  62777  62853   77  0  2  136   38    54 0.973   2.22
S.002 Init + 193581 193677   97  2  1   56  117    69 0.924   7.12


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_1|241_aa
MAAAVAAAPGALGSLHAGGARLVAACSRRAGPAIWAQGWVPAAGGPAPKRGYSSEMKTED
ELRVRHLEEENRVQGKAKRVVKGGIAVSTLNLRVKPEDQCFNFDMHLLSTYNLLSRSEKR
EITEISELLLRATAFIPSLPDQFITQSQRVPGPCPATKRNEVRGHQRPRVPRGTSSAILP
QCSCSTALAQLLRSYQEAADHQFQGFLVCTFLPVVRGGSVDITIGTHIVHISSIEYGEWT
C

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_1|726_bp
atggcggccgcggtggcggcggcacctggggccttgggatccctgcatgctggcggcgcc
cgcctggtggccgcttgcagccggcgagcgggcccggcgatctgggcccagggctgggta
cctgcggccgggggtcccgccccgaaaaggggctacagctctgagatgaagacggaggac
gagctgcgggtgcggcacctggaggaggagaaccgagtgcagggaaaagctaaaagggtc
gtgaagggtggaatagcagtttccacccttaacctccgggttaagccagaggaccagtgt
tttaattttgacatgcatttgttgagcacctataatctgttaagcagaagtgaaaagcgt
gagattacagagatttctgagctgctgcttcgtgctacggcttttataccctctttaccc
gaccagtttataactcagtctcagcgagttccaggtccttgtcccgcgaccaagaggaat
gaggtgcgtggacaccagagaccccgtgttcctagagggacgtcatccgccattttgcct
cagtgctcatgctcaactgcacttgcccagctcctgagatcttatcaggaagctgctgat
caccagtttcagggcttcctggtgtgcaccttccttccagtagttcgtggtggcagtgtt
gacatcactattgggacccatattgtgcacattagcagtatagaatatggggagtggaca
tgttaa

>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_2|147_aa
MDAAGGHYPKQTNSETENQILHAATFQSSRYLKLTIMAANRLSLHEEVVEPWGSPASDLN
FPADLCERLFLGHRKSSQSTVNVSGIVQKPNVSGIAQKPRGPHFLGSWRSRSPAVPAMSP
GKQFPSAKAEHSSEAASKSAVTCGLVT

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_2|444_bp
atggatgcagctggaggccattatcctaagcaaactaactcagaaacagaaaaccaaata
ctgcatgccgccactttccagtcaagtcgatacctaaaattaaccatcatggcggccaac
cgactaagtctgcatgaggaggtagtagagccctggggctcaccggcaagtgacttaaat
ttccctgccgacctctgcgaaaggctatttctgggacacaggaagagctctcaaagtaca
gtgaatgttagtggcattgtgcagaagcccaatgttagtggcatcgcgcagaagcccaga
ggaccacacttcctcgggagttggcgctcacggagtccagctgtgccagccatgtcccca
gggaaacaattcccctctgcaaaggcagaacattcctctgaagcagcttccaaatctgct
gtcacttgcggcctggtcacctag

>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_3|93_aa
MAMQLCSLPAGRMRMRALHRGAVGYQGAGHPNHPRPRPPTLPCAAPHCDWPGWWLWLLCP
RPANAPEDHSGSPQGSPVQSLGRNPVGAFSGCD

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_3|282_bp
atggctatgcagctgtgcagccttcccgcggggcgcatgcgcatgcgtgcactgcacagg
ggcgctgtgggctaccagggcgcaggccaccccaaccacccccgcccccggccgccgact
ctgccctgcgctgctccccactgcgattggcctggctggtggctgtggctgctgtgtcct
cgcccagccaatgcccctgaggatcactcaggttccccacagggctctcctgttcagtca
ctggggcggaacccagtgggagctttctcgggttgtgactga

>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_4|457_aa
MQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSACRRKRE
FIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLKLK
FGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIKHSPQS
SLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYTASIYQ
NYMGNSFSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQVPKGPIHSPVEL
KHVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEAFDNEFEATQKLSSPIDMTSKRHFEL
EKHSAPSMVHSSLTPFSVQVTNIQDWSLKSEHWHQKELSGKTQNSFKTGVVEMKDSGYKV
SDPENLYLKQGIANLSAEVVSLKRLIATQPISASDSG

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_4|1374_bp
atgcagaccgtcaaaaaggagcaggcgtctcttgatgccagtagcaatgtggacaagatg
atggtccttaattctgctttaacggaagtgtcagaagactccacaacaggtgaggagctg
cttctcagtgaaggaagtgtggggaagaacaaatcttctgcatgtcggaggaaacgggaa
ttcattcctgatgaaaagaaagatgctatgtattgggaaaaaaggcggaaaaataatgaa
gctgccaaaagatctcgtgagaagcgtcgactgaatgacctggttttagagaacaaacta
attgcactgggagaagaaaacgccactttaaaagctgagctgctttcactaaaattaaag
tttggtttaattagctccacagcatatgctcaagagattcagaaactcagtaattctaca
gctgtgtactttcaagattaccagacttccaaatccaatgtgagttcatttgtggacgag
cacgaaccctcgatggtgtcaagtagttgtatttctgtcattaaacactctccacaaagc
tcgctgtccgatgtttcagaagtgtcctcagtagaacacacgcaggagagctctgtgcag
ggaagctgcagaagtcctgaaaacaagttccagattatcaagcaagagccgatggaatta
gagagctacacaagggagccaagagatgaccgaggctcttacacagcgtccatctatcaa
aactatatggggaattctttctctgggtactcacactctcccccactactgcaagtcaac
cgatcctccagcaactccccgagaacgtcggaaactgatgatggtgtggtaggaaagtca
tctgatggagaagacgagcaacaggtccccaagggccccatccattctccagttgaactc
aagcatgtgcatgcaactgtggttaaagttccagaagtgaattcctctgccttgccacac
aagctccggatcaaagccaaagccatgcagatcaaagtagaagcctttgataatgaattt
gaggccacgcaaaaactttcctcacctattgacatgacatctaaaagacatttcgaactc
gaaaagcatagtgccccaagtatggtacattcttctcttactcctttctcagtgcaagtg
actaacattcaagattggtctctcaaatcggagcactggcatcaaaaagaactgagtggc
aaaactcagaatagtttcaaaactggagttgttgaaatgaaagacagtggctacaaagtt
tctgacccagagaacttgtatttgaagcaggggatagcaaacttatctgcagaggttgtc
tcactcaagagacttatagccacacaaccaatctctgcttcagactctgggtaa

>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_5|233_aa
MAPFAKASTDHYPCIGKRRECATCLDSLARRLKKSRLAREFGREDYRIQLDAEITLSSYQ
LKITGRDPARSSQAPAPNDSGRPSGGTRARTFTSSEERRTRVAGGGEEWGVEEWGIVLIC
LVRKRVGSVNGDGIRRMPARRLFVSGAVSAQTFSTLFVVSVFYKPSGRLWDLSFHTLHNL
PTVKCWQELRADVGICAYVCNDLVIEAQRWILDRYLRLYYVPNKQVLKRYYKT

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_5|702_bp
atggctcccttcgccaaggccagcactgaccactatccgtgtatcggtaaacgcagggag
tgtgccacgtgccttgacagtctagcgcgacgacttaagaagtcgcggctagcccgggaa
tttgggagagaagactaccgtatccagttagacgcagaaataacactaagcagctatcag
ctcaaaatcacaggaagagatcccgcgcggtcgtctcaagccccagcaccaaacgacagt
gggcgtcccagcgggggcacccgagcgcggaccttcacatcctccgaggaacgccgcacc
cgcgtggcgggggggggagaggaatggggggttgaggaatggggaatagtcttaatttgc
ttggtgagaaaaagggttggtagcgtgaacggtgacggcattcggagaatgcctgcgcgg
cgtttgtttgtgtcaggggctgtgtctgcacagacgttttccaccctgtttgtcgtcagc
gtgttttacaagccctcgggaaggttgtgggatttgtcctttcatacattgcataatctg
cccacggtgaaatgttggcaagaattgcgggctgatgtgggaatatgcgcgtatgtgtgc
aatgatttggtaattgaggcgcagcgttggatattagatcgttatttacgtctatattac
gtcccaaataaacaggttttaaaacgatactacaaaacctaa

>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_6|401_aa
MGKDFMTKTPRAMATKAKIDKWDLIKVKSFYTARETTIRVNRQPTEWEKIFAIYSSDKGL
TSRIDKELKQIYKKKTNNPIKKWAKDVNRHFSKEDIYAAKRRMKKCSSSLAIREMQIKTT
MRYHLTPVRMAIIRKSGNNSEASLHLAYLPVVHIPHFSWMWDKNLDPLNGRTESAVTQTG
LKHAPLLATFRMTRRREELWPFGELRPRGSQSQGCGTLFGSVWFLASPSFWAPPCPSRPD
VGTHSRSHMWYIWSSCSLAGSQHLCWHLELPVLPKQPACLAVHNDQILHLLTHTPLTTLR
LARPWQQQESIGNPGRPKLAAGGRRGKGVQDKACPVASKRGLGQHWALLPAIPGDCPRAG
SFIILPVCGLTKSSTDLHAPPESSITQQQLKTQWHLNLEHF

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_6|1206_bp
atgggcaaggacttcatgactaaaacaccaagagcaatggcaacaaaagccaaaatagat
aaatgggatctaattaaagtaaagagcttctacacagcaagagaaactaccatcagagtg
aacaggcaacctacagaatgggagaaaatttttgcaatctactcatcggacaaagggcta
acatccagaattgacaaagaactcaaacaaatttacaagaaaaaaacaaacaaccccatc
aaaaagtgggcgaaggatgtgaacagacatttctcaaaagaagacatttatgcagccaaa
agacgcatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccaca
atgagataccatctcacgccagttagaatggcgatcattagaaagtcaggaaacaacagt
gaagctagtcttcaccttgcttacctgccagttgtccacatacctcatttttcctggatg
tgggacaagaacttggacccactgaatggcaggactgaaagtgctgtaacacaaacaggg
ctgaaacatgcccctctgcttgccacattccggatgacaagaaggagagaagagctgtgg
cccttcggggagctcagacctaggggctcccagagccagggctgtggcaccctctttggg
tctgtgtggttcctggcatctccaagcttctgggcaccaccatgtccctctcgtccagat
gtgggcacccacagcagaagccacatgtggtacatctggtccagctgcagccttgcaggg
agccagcacctgtgctggcacctggagctgcctgtgctgccaaagcagccagcatgcctg
gctgtgcacaatgaccagatcctgcacttgctcacccacacacccctcaccactctgcgc
ctggctcgcccttggcagcagcaggaaagcattgggaacccaggaagacccaagttagct
gctggtggtagaagagggaaaggcgtccaagacaaagcctgtccagtagcaagcaagaga
ggcttgggacagcactgggctctactgcctgcaattcctggtgactgcccgagagctggc
tcttttatcatcctgccagtatgcggactcacaaaatcctccacagacctacatgcaccg
cctgagagcagcatcacacagcagcagctgaaaacacaatggcacctgaatcttgagcac
ttctga

>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_7|428_aa
MVKGSIQREELTILNIYAPNTGAPRFIRQVLRDRQRDLDFHTIIMGDFNTPLSVLDRSTR
QKANKDIQDFNSALYQADLTDIYITLHPKSTVYTFFSAPHHTYSKIDHLVGSKALLSKCK
RTEITTNFLSDHSAIKLELRIEKLTQNHTTTWKLNNLLLNDYWVNNEMKTDIKMFFETNE
NKDTTYQNFWDTFKAINKIDTPLARLIEKNQIDTIKNDKGDITTYPTEIQTTIREYYKHL
YANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIEAIINSLPTKKSPGPEGFTA
KFCQRYKKELVLFLLKLFQSTEKEGILPNSFYEASIILIPKPGRDTTKKENFTPISLMNI
NVKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHMIIS
IDAEKAFD

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_7|1287_bp
atggtaaagggatcaattcaacgagaagagctaactatcctaaatatatatgcacccaac
acaggagcacccagattcataaggcaagtccttagagaccgacaaagagacttagacttc
cacacaataataatgggagactttaacaccccactgtcagtattagacagatcaacgaga
cagaaggctaacaaggatatccaggacttcaactcagctctgtaccaagcagacctaaca
gacatctacataaccctccaccccaaatcaacagtatatacattcttctcagcaccacat
cacacttactccaaaattgaccacttagttggaagtaaagcactcctcagcaaatgtaaa
agaacagaaatcacaacaaactttctctcagaccacagtgcaatcaaactagaactcagg
attgagaaactcactcaaaaccacacaactacatggaaactgaacaacctgctccttaat
gactactgggtaaataacgaaatgaagacagatataaagatgttctttgaaaccaatgag
aacaaagacacaacataccagaatttctgggacacatttaaagcaatcaacaaaattgat
acaccactagcaagactaatagagaagaatcaaatagacacaataaaaaatgataaaggg
gatatcaccacctatcccacagaaatacaaactaccatcagagaatactataaacacctc
tatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacaccctc
ccaagactaaaccaggaagaagttgaatccctgaatagaccaataacaggctctgaaatt
gaggcaataattaatagcctaccaaccaaaaaaagtccaggaccagaaggattcacagcc
aaattctgccagaggtacaaaaaggagctggtactattccttctgaaactattccaatca
acagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgatacca
aagcctggcagagacaccacaaaaaaagagaattttacaccaatatccctgatgaacatc
aatgtgaaaatcctcaataaaatactggcaaaccgaatccagcagcacatcaaaaagctt
atccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaacatacgcaaa
tcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatgattatctca
atagatgcagaaaaggcctttgactaa

>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_8|193_aa
MKIRKKQCKKAENSKKQNIFSPPKDHNSSPAREQNWTESDFDELTEVGFRRWVITNSSEL
KEHVLTQCKEAKNLEKRLEELLTRITGLEKNINDLINIARELHEAYTSTNSQINQAEERI
SEIKDQLNEIKREDKIREKRVKRNEQSLQEIWDYVKRPNLCLIGVPKSDGENGTKLENTL
QDIIQENFPNLAR

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_8|582_bp
atgaagatcaggaaaaaacagtgcaaaaaggctgaaaattccaaaaaacagaacatcttt
tctcctccaaaggatcacaactcctcgccagcaagggaacaaaactggacggaaagtgac
tttgacgaattgacagaagtaggcttcagaaggtgggtaataacaaactcctccgagcta
aaggagcatgttctaacccaatgcaaggaagctaagaaccttgaaaaaaggttagaggaa
ctgctaactagaataaccggcttagagaagaacataaatgacctgataaacatagcacga
gaacttcatgaagcatacacaagtaccaatagccaaatcaatcaagcagaagaaaggata
tcagagattaaagatcaacttaatgaaataaagcgagaagacaagattagagaaaaaaga
gtgaaaaggaatgaacaaagcctccaagaaatatgggactatgtgaaaaggccaaacctg
tgtctgattggtgtacctaaaagtgacggggagaatggaaccaagctggaaaacactctt
caggatattatccaggagaacttccccaacctagcaagatag

>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_9|171_aa
MLGSTGRGVDVKQRREGSRCTGCFTDVIAVGSSGSTPLEASRGKLGHTSDSGPACESGSL
GPSMEKCRCICEKPLLCKLPVGATAGDGCNSAMSRRGASQALVGSIILGMLLPEEPNKEV
IVSRETGQTLRSPGRHQSRFGKRTLGPQQANEEAGHLQSGNAKALAPRQID

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_9|516_bp
atgctgggaagcactgggaggggcgtggatgtgaaacagagaagagaaggaagtcgatgc
acagggtgctttacagacgttatcgctgtgggcagtagtggctcaaccccactggaagcc
tctagaggaaagttaggacacacgtcagactcaggtcccgcgtgtgagtcaggctccctg
ggcccttcaatggagaagtgccgctgcatctgtgagaagccactactgtgcaagcttcca
gtgggtgccacggcgggcgatgggtgcaactcagccatgtccaggagaggagcatcccag
gcacttgttggaagcatcattctagggatgctgttgcctgaggagccaaacaaagaggtg
attgtatccagggaaacaggacagactctcaggtcccctgggaggcaccaaagccgattt
ggtaaaagaacactgggccctcaacaggcaaatgaagaagctggtcatcttcagagtgga
aatgctaaggctctcgcaccaagacaaatagactga

>gi568815589r:91309349_91510734|GENSCAN_predicted_peptide_10|132_aa
MPAPDTLKLTENDRELRENEEDLTKLKCELLNITNHQGNANQNHTLLYRRPWSHESDEKM
ETEPWALDQAAGLVFRPDPHFRAGAVQHRAGFSEDDLEAAAPGLCRTRREAQSRLMDNLA
WTQLCLKTGSVE

>gi568815589r:91309349_91510734|GENSCAN_predicted_CDS_10|399_bp
atgcctgcccctgatactctgaaattgaccgagaatgacagggaactcagagagaatgag
gaggaccttacaaaattaaaatgtgagctcctcaacatcactaatcatcagggaaatgca
aatcaaaaccacaccctactgtatcggcgtccttggtcccatgaatccgatgagaaaatg
gagacagagccatgggcactcgaccaggctgcagggctagtgttcaggcctgacccacac
ttcagagctggggctgtccagcaccgtgcagggttcagtgaagatgaccttgaggcagca
gctcctgggctgtgcaggaccaggagggaagcccagtcgaggctcatggacaaccttgct
tggacacagctttgtctcaaaactggaagtgttgaatga