FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9630, 237 aa
  1>>>pF1KB9630 237 - 237 aa - 237 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2516+/-0.000635; mu= 8.6255+/- 0.039
 mean_var=154.4853+/-31.323, 0's: 0 Z-trim(117.4): 44  B-trim: 837 in 1/53
 Lambda= 0.103188
 statistics sampled from 18050 (18095) to 18050 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.556), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS4187.1 NEUROG1 gene_id:4762|Hs108|chr5         ( 237) 1621 251.6 3.4e-67
CCDS31212.1 NEUROG3 gene_id:50674|Hs108|chr10      ( 214)  472 80.5 9.7e-16
CCDS3698.1 NEUROG2 gene_id:63973|Hs108|chr4        ( 272)  437 75.4 4.3e-14


>>CCDS4187.1 NEUROG1 gene_id:4762|Hs108|chr5              (237 aa)
 initn: 1621 init1: 1621 opt: 1621  Z-score: 1319.9  bits: 251.6 E(32554): 3.4e-67
Smith-Waterman score: 1621; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB9 MPARLETCISDLDCASSSGSDLSGFLTDEEDCARLQQAASASGPPAPARRGAPNISRASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPARLETCISDLDCASSSGSDLSGFLTDEEDCARLQQAASASGPPAPARRGAPNISRASE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VPGAQDDEQERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VPGAQDDEQERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SFPDDTKLTKIETLRFAYNYIWALAETLRLADQGLPGGGARERLLPPQCVPCLPGPPSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SFPDDTKLTKIETLRFAYNYIWALAETLRLADQGLPGGGARERLLPPQCVPCLPGPPSPA
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KB9 SDAESWGSGAAAASPLSDPSSPAASEDFTYRPGDPVFSFPSLPKDLLHTTPCFIPYH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SDAESWGSGAAAASPLSDPSSPAASEDFTYRPGDPVFSFPSLPKDLLHTTPCFIPYH
              190       200       210       220       230       

>>CCDS31212.1 NEUROG3 gene_id:50674|Hs108|chr10           (214 aa)
 initn: 453 init1: 412 opt: 472  Z-score: 396.1  bits: 80.5 E(32554): 9.7e-16
Smith-Waterman score: 489; 53.7% identity (70.9% similar) in 175 aa overlap (42-213:34-193)

              20        30        40         50        60        70
pF1KB9 LDCASSSGSDLSGFLTDEEDCARLQQAASASGPPAPAR-RGAPNISRASEVPGAQDDEQE
                                     :.::.:.: ::  : ..: :       .. 
CCDS31 QPSGAPTVQVTRETERSFPRASEDEVTCPTSAPPSPTRTRG--NCAEAEEGGCRGAPRKL
            10        20        30        40          50        60 

               80        90       100       110       120       130
pF1KB9 RRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLPSFPDDTKLTK
       : :: ::.: .::  : . ::::: ::::::::::::::.::::::.:::.::::.::::
CCDS31 RARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTK
              70        80        90       100       110       120 

              140       150       160       170       180       190
pF1KB9 IETLRFAYNYIWALAETLRLADQGLPGGGARERLLPPQCVPCLPGPPSPASDAESWGSGA
       :::::::.::::::..:::.::..: .      : ::  .:      ::...  .:::  
CCDS31 IETLRFAHNYIWALTQTLRIADHSLYA------LEPP--APHCGELGSPGGSPGDWGS--
             130       140             150         160       170   

              200         210       220       230       
pF1KB9 AAASPLSDPSS--PAASEDFTYRPGDPVFSFPSLPKDLLHTTPCFIPYH
          ::.:. .:  ::::  .  :::                        
CCDS31 -LYSPVSQAGSLSPAAS--LEERPGLLGATFSACLSPGSLAFSDFL   
              180         190       200       210       

>>CCDS3698.1 NEUROG2 gene_id:63973|Hs108|chr4             (272 aa)
 initn: 519 init1: 373 opt: 437  Z-score: 366.5  bits: 75.4 E(32554): 4.3e-14
Smith-Waterman score: 437; 46.2% identity (67.2% similar) in 186 aa overlap (33-215:51-233)

             10        20        30        40         50        60 
pF1KB9 ARLETCISDLDCASSSGSDLSGFLTDEEDCARLQQAASAS-GPPAPARRGAPNISRASEV
                                     :: :..: :. :  . .  :: .  : ...
CCDS36 GSASPALAALTPLSSSADEEEEEEPGASGGARRQRGAEAGQGARGGVAAGAEG-CRPARL
               30        40        50        60        70          

              70          80        90       100       110         
pF1KB9 PGAQDDEQER-RRRRGRTR-VRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVL
        :   : ..:  : :. .: ...   .. ....::.:::.::::::::::::::::: ::
CCDS36 LGLVHDCKRRPSRARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVL
      80        90       100       110       120       130         

     120       130       140       150       160       170         
pF1KB9 PSFPDDTKLTKIETLRFAYNYIWALAETLRLADQGLPGGGARERLLPPQCVPCLPGPPSP
       :.::.:.:::::::::::.::::::.:::::::.   :::.    :  . :   ::  : 
CCDS36 PTFPEDAKLTKIETLRFAHNYIWALTETLRLADHCGGGGGGLPGALFSEAVLLSPGGASA
     140       150       160       170       180       190         

     180       190       200       210       220       230         
pF1KB9 ASDAESWGSGAAAASPLSDPSSPAASEDFTYRPGDPVFSFPSLPKDLLHTTPCFIPYH  
       :    : :.. . ::  :  .::: : . .    .:                        
CCDS36 A--LSSSGDSPSPASTWSCTNSPAPSSSVSSNSTSPYSCTLSPASPAGSDMDYWQPPPPD
     200         210       220       230       240       250       

CCDS36 KHRYAPHLPIARDCI
       260       270  




237 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:49:43 2016 done: Fri Nov  4 17:49:44 2016
 Total Scan time:  2.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]