Result of FASTA (omim) for pF1KB9627
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9627, 382 aa
  1>>>pF1KB9627 382 - 382 aa - 382 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1103+/-0.000337; mu= 4.2164+/- 0.021
 mean_var=301.2104+/-60.330, 0's: 0 Z-trim(125.3): 37  B-trim: 2702 in 2/58
 Lambda= 0.073899
 statistics sampled from 48569 (48608) to 48569 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.835), E-opt: 0.2 (0.57), width:  16
 Scan time:  8.090

The best scores are:                                      opt bits E(85289)
NP_006151 (OMIM: 601725) neurogenic differentiatio ( 382) 2634 293.4 5.9e-79
NP_002491 (OMIM: 125853,601724,606394) neurogenic  ( 356) 1092 129.0 1.7e-29
NP_073565 (OMIM: 611513) neurogenic differentiatio ( 337)  788 96.5 9.6e-20
NP_067014 (OMIM: 611635) neurogenic differentiatio ( 331)  653 82.1   2e-15
NP_076924 (OMIM: 606624) neurogenin-2 [Homo sapien ( 272)  295 43.9 0.00055
NP_006152 (OMIM: 601726) neurogenin-1 [Homo sapien ( 237)  286 42.8 0.00098
XP_016871769 (OMIM: 604882,610370) PREDICTED: neur ( 214)  285 42.7 0.00099
NP_066279 (OMIM: 604882,610370) neurogenin-3 [Homo ( 214)  285 42.7 0.00099
XP_005260965 (OMIM: 606386) PREDICTED: oligodendro ( 323)  275 41.8  0.0027
NP_005797 (OMIM: 606386) oligodendrocyte transcrip ( 323)  275 41.8  0.0027


>>NP_006151 (OMIM: 601725) neurogenic differentiation fa  (382 aa)
 initn: 2634 init1: 2634 opt: 2634  Z-score: 1538.4  bits: 293.4 E(85289): 5.9e-79
Smith-Waterman score: 2634; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)

               10        20        30        40        50        60
pF1KB9 MLTRLFSEPGLLSDVPKFASWGDGEDDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MLTRLFSEPGLLSDVPKFASWGDGEDDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RGEEGTEATLAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKKRGPKKRKMTKARLERSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RGEEGTEATLAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKKRGPKKRKMTKARLERSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YPCSRLAGAQCQAAGGLGGGAAHALRTHGYCAAYETLYAAAGGGGASPDYNSSEYEGPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YPCSRLAGAQCQAAGGLGGGAAHALRTHGYCAAYETLYAAAGGGGASPDYNSSEYEGPLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 PPLCLNGNFSLKQDSSPDHEKSYHYSMHYSALPGSRPTGHGLVFGSSAVRGGVHSENLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PPLCLNGNFSLKQDSSPDHEKSYHYSMHYSALPGSRPTGHGLVFGSSAVRGGVHSENLLS
              310       320       330       340       350       360

              370       380  
pF1KB9 YDMHLHHDRGPMYEELNAFFHN
       ::::::::::::::::::::::
NP_006 YDMHLHHDRGPMYEELNAFFHN
              370       380  

>>NP_002491 (OMIM: 125853,601724,606394) neurogenic diff  (356 aa)
 initn: 1075 init1: 811 opt: 1092  Z-score: 650.3  bits: 129.0 E(85289): 1.7e-29
Smith-Waterman score: 1092; 51.5% identity (69.5% similar) in 361 aa overlap (31-382:6-356)

               10        20        30        40        50        60
pF1KB9 MLTRLFSEPGLLSDVPKFASWGDGEDDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPL
                                     :..:    : : .: :.      ...    
NP_002                          MTKSYSESGLMGEPQPQGP-PSWTDECLSSQDEEH
                                        10         20        30    

               70          80            90       100       110    
pF1KB9 RGEEGTEATLAEVKEEGEL--GGEEEEE----EEEEEGLDEAEGERPKKRGPKKRKMTKA
       ....  .   :   ::  :  :::::.:    :::::  .: . ..::.:::::.:::::
NP_002 EADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKA
           40        50        60        70        80        90    

          120       130       140       150       160       170    
pF1KB9 RLERSKLRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALS
       :::: ::::.::::::::::: ::::::::::::::::::::::::::::::::::::::
NP_002 RLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALS
          100       110       120       130       140       150    

          180       190       200       210       220       230    
pF1KB9 EILRSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPF
       ::::::: :::::.::::::::::::::::::::::: :.:: ::. :   ..  ... :
NP_002 EILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASF
          160       170       180       190       200       210    

          240       250       260         270       280       290  
pF1KB9 AMHPYPYPCSRLAGAQCQAAGGLGGGAAHALRT--HGYCAAYETLYAAAGGGGASPDYNS
        .::: :      :      : . .. .  ..   :.: :: : .. .     .::.   
NP_002 PVHPYSYQSP---GLPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPS---
          220          230       240       250       260           

            300       310       320       330       340        350 
pF1KB9 SEYEGPLSPPLCLNGNFSLKQDSSPDHEKSYHYSMHYSALPGSRPTGHGLVF-GSSAVRG
         ..::::::: .:::::.:.. : . ::.: ..::: :   .   .:: .: :..: : 
NP_002 --FDGPLSPPLSINGNFSFKHEPSAEFEKNYAFTMHYPAATLAGAQSHGSIFSGTAAPRC
        270       280       290       300       310       320      

             360       370       380  
pF1KB9 GVHSENLLSYDMHLHHDRGPMYEELNAFFHN
        .  .:..:.: : ::.:  :  .:::.::.
NP_002 EIPIDNIMSFDSHSHHER-VMSAQLNAIFHD
        330       340        350      

>>NP_073565 (OMIM: 611513) neurogenic differentiation fa  (337 aa)
 initn: 1037 init1: 696 opt: 788  Z-score: 475.4  bits: 96.5 E(85289): 9.6e-20
Smith-Waterman score: 1014; 52.0% identity (72.4% similar) in 333 aa overlap (51-382:34-337)

               30        40        50        60        70        80
pF1KB9 WGDGEDDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEATLAEVKEEGELG
                                     :   .: . :::.   .:   :...: :  
NP_073 LPFDESVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEEE--
            10        20        30        40        50        60   

               90       100       110       120       130       140
pF1KB9 GEEEEEEEEEEGLDEAEGERPKKRGPKKRKMTKARLERSKLRRQKANARERNRMHDLNAA
        ::..:::.:.::       :..:: .:.: :: :::: :.:::.:::::::::: :: :
NP_073 -EEDREEEDENGL-------PRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDA
               70               80        90       100       110   

              150       160       170       180       190       200
pF1KB9 LDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPT
       :::::::::::::::::::::::::::::::::::::: ::::::...::.:::::::::
NP_073 LDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPT
           120       130       140       150       160       170   

              210       220       230       240       250       260
pF1KB9 TNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAGAQCQAAGGLGGG
       :::::::::::.:.::  ::...:   : . .:..    ::   .:.     . : : . 
NP_073 TNLVAGCLQLNARSFLMGQGGEAA---HHTRSPYSTFYPPYHSPELTTP--PGHGTLDN-
           180       190          200       210         220        

              270       280       290       300        310         
pF1KB9 AAHALRTHGYCAAYETLYAAAGGGGASPDYNSSEYEGPLSPP-LCLNGNFSLKQDSSPDH
        ..... ..::.:::..: ..     ::.  : ..::::::: .  :: :::::. . :.
NP_073 -SKSMKPYNYCSAYESFYEST-----SPECASPQFEGPLSPPPINYNGIFSLKQEETLDY
        230       240            250       260       270       280 

     320       330       340       350       360       370         
pF1KB9 EKSYHYSMHYSALPGSRPTGHGLVFGSSAVRGGVHSENLLSYDMHLHHDRGPMYEELNAF
        :.:.:.::: :.:   : :.: .:     :  . ... . ::.::. .   : .:::: 
NP_073 GKNYNYGMHYCAVPPRGPLGQGAMF-----R--LPTDSHFPYDLHLRSQSLTMQDELNAV
             290       300              310       320       330    

     380  
pF1KB9 FHN
       :::
NP_073 FHN
          

>>NP_067014 (OMIM: 611635) neurogenic differentiation fa  (331 aa)
 initn: 924 init1: 642 opt: 653  Z-score: 397.7  bits: 82.1 E(85289): 2e-15
Smith-Waterman score: 849; 48.4% identity (67.4% similar) in 316 aa overlap (65-380:39-329)

           40        50        60        70        80        90    
pF1KB9 DAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEATLAEVKEEGELGGEEEEEEEEEEGLD
                                     :: . :. . :: .  . ::::::::.:  
NP_067 KEMGELVNTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHD--SIEEEEEEEEDG--
       10        20        30        40        50          60      

          100       110       120       130       140       150    
pF1KB9 EAEGERPKKRGPKKRKMTKARLERSKLRRQKANARERNRMHDLNAALDNLRKVVPCYSKT
           :.::.:::::.::::::::: . :: :::::::.::: :: ::::::.:.::::::
NP_067 ----EKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKT
               70        80        90       100       110       120

          160       170       180       190       200       210    
pF1KB9 QKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRN
       ::::::::::::.::::::::.:..:. :.  ..:. :::::::::.:::::::::. ..
NP_067 QKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQS
              130       140       150       160       170       180

          220       230       240       250       260       270    
pF1KB9 FLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAGAQCQAAGGLGGGAAHALRTHGYCAAY
        : :.  :   .     . ...: . :    : .         :   .: :  :    ..
NP_067 VLLEKHED---KSPICDSAISVHNFNYQSPGLPSPP------YGHMETHLL--HLKPQVF
                 190       200       210             220           

          280       290       300       310       320       330    
pF1KB9 ETLYAAAGGGGASPDYNSSEYEGPLSPPLCLNGNFSLKQDSSPDHEKSYHYSMHYSALPG
       ..: . .. :.  :: ..  :::::.::: ..::::::::.::: :::: .  :: .   
NP_067 KSL-GESSFGSHLPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSYSFMPHYPSSSL
     230        240       250       260       270       280        

          340       350       360       370       380  
pF1KB9 SRPTGHGLVFGSSAVRGGVHSENLLSYDMHLHHDRGPMYEELNAFFHN
       :    :.  : ... :  :  .  .::: . ::  :    .::. :  
NP_067 SSGHVHSTPFQAGTPRYDVPID--MSYDSYPHHGIGT---QLNTVFTE
      290       300       310         320          330 

>>NP_076924 (OMIM: 606624) neurogenin-2 [Homo sapiens]    (272 aa)
 initn: 351 init1: 268 opt: 295  Z-score: 192.5  bits: 43.9 E(85289): 0.00055
Smith-Waterman score: 295; 44.4% identity (64.4% similar) in 135 aa overlap (46-178:45-169)

          20        30        40        50        60        70     
pF1KB9 PKFASWGDGEDDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEATLAEVKE
                                     ::: : ::       :: :. ... .    
NP_076 DVLVLLGSASPALAALTPLSSSADEEEEEEPGASGGARRQ-----RGAEAGQGARG----
           20        30        40        50             60         

          80        90       100        110        120       130   
pF1KB9 EGELGGEEEEEEEEEEGLDEAEGERPKK-RGPKKRKMTKARLER-SKLRRQKANARERNR
        :  .: :  .  .  :: .   .::.. :. ..   :   ..: .: :: ::: :::::
NP_076 -GVAAGAEGCRPARLLGLVHDCKRRPSRARAVSRGAKTAETVQRIKKTRRLKANNRERNR
           70        80        90       100       110       120    

           140       150       160       170       180       190   
pF1KB9 MHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLC
       ::.:::::: ::.:.: . .  ::.::::::.:.::::::.: ::               
NP_076 MHNLNAALDALREVLPTFPEDAKLTKIETLRFAHNYIWALTETLRLADHCGGGGGGLPGA
          130       140       150       160       170       180    

           200       210       220       230       240       250   
pF1KB9 KGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAGAQCQA
                                                                   
NP_076 LFSEAVLLSPGGASAALSSSGDSPSPASTWSCTNSPAPSSSVSSNSTSPYSCTLSPASPA
          190       200       210       220       230       240    

>>NP_006152 (OMIM: 601726) neurogenin-1 [Homo sapiens]    (237 aa)
 initn: 341 init1: 280 opt: 286  Z-score: 188.0  bits: 42.8 E(85289): 0.00098
Smith-Waterman score: 286; 54.9% identity (72.5% similar) in 91 aa overlap (89-178:60-149)

       60        70        80        90       100       110        
pF1KB9 PLRGEEGTEATLAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKKRGPKKRKMTKARLER
                                     :  : .. : :: ..:: . :  ..: :. 
NP_006 EDCARLQQAASASGPPAPARRGAPNISRASEVPGAQDDEQERRRRRG-RTRVRSEALLHS
      30        40        50        60        70         80        

       120       130       140       150       160       170       
pF1KB9 -SKLRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL
         . :: ::: :::::::.:::::: ::.:.: .    ::.::::::.: ::::::.: :
NP_006 LRRSRRVKANDRERNRMHNLNAALDALRSVLPSFPDDTKLTKIETLRFAYNYIWALAETL
       90       100       110       120       130       140        

       180       190       200       210       220       230       
pF1KB9 RSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMH
       :                                                           
NP_006 RLADQGLPGGGARERLLPPQCVPCLPGPPSPASDAESWGSGAAAASPLSDPSSPAASEDF
      150       160       170       180       190       200        

>>XP_016871769 (OMIM: 604882,610370) PREDICTED: neurogen  (214 aa)
 initn: 254 init1: 254 opt: 285  Z-score: 188.0  bits: 42.7 E(85289): 0.00099
Smith-Waterman score: 285; 38.6% identity (60.7% similar) in 140 aa overlap (40-178:3-140)

      10        20        30        40        50        60         
pF1KB9 GLLSDVPKFASWGDGEDDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEAT
                                     : :. .: .    .. .  :  .:.  :.:
XP_016                             MTPQPSGAPTVQVTRETERSFPRASED--EVT
                                           10        20          30

      70        80        90       100       110       120         
pF1KB9 LAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKKRGPKKRKMTKARLERSKL-RRQKANA
              .    . .  : :: :   :  .   .:: ..:  ..  : ...  ::.::: 
XP_016 CPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRKKAND
               40        50        60        70        80        90

      130       140       150       160       170       180        
pF1KB9 RERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSY
       :::::::.::.::: :: :.: .    ::.::::::.:.::::::.. ::          
XP_016 RERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADHSLYALE
              100       110       120       130       140       150

      190       200       210       220       230       240        
pF1KB9 VQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAG
                                                                   
XP_016 PPAPHCGELGSPGGSPGDWGSLYSPVSQAGSLSPAASLEERPGLLGATFSACLSPGSLAF
              160       170       180       190       200       210

>>NP_066279 (OMIM: 604882,610370) neurogenin-3 [Homo sap  (214 aa)
 initn: 254 init1: 254 opt: 285  Z-score: 188.0  bits: 42.7 E(85289): 0.00099
Smith-Waterman score: 285; 38.6% identity (60.7% similar) in 140 aa overlap (40-178:3-140)

      10        20        30        40        50        60         
pF1KB9 GLLSDVPKFASWGDGEDDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEAT
                                     : :. .: .    .. .  :  .:.  :.:
NP_066                             MTPQPSGAPTVQVTRETERSFPRASED--EVT
                                           10        20          30

      70        80        90       100       110       120         
pF1KB9 LAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKKRGPKKRKMTKARLERSKL-RRQKANA
              .    . .  : :: :   :  .   .:: ..:  ..  : ...  ::.::: 
NP_066 CPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRKKAND
               40        50        60        70        80        90

      130       140       150       160       170       180        
pF1KB9 RERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSY
       :::::::.::.::: :: :.: .    ::.::::::.:.::::::.. ::          
NP_066 RERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADHSLYALE
              100       110       120       130       140       150

      190       200       210       220       230       240        
pF1KB9 VQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAG
                                                                   
NP_066 PPAPHCGELGSPGGSPGDWGSLYSPVSQAGSLSPAASLEERPGLLGATFSACLSPGSLAF
              160       170       180       190       200       210

>>XP_005260965 (OMIM: 606386) PREDICTED: oligodendrocyte  (323 aa)
 initn: 246 init1: 126 opt: 275  Z-score: 180.1  bits: 41.8 E(85289): 0.0027
Smith-Waterman score: 275; 31.4% identity (52.3% similar) in 287 aa overlap (60-333:55-316)

      30        40        50        60        70        80         
pF1KB9 RSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEATLAEVKEEGELGGEEEEEEEE
                                     :::  :. ..    :  :  .: .      
XP_005 RSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMGSAGAHPGDKLGG--SGFKSSSSST
           30        40        50        60        70          80  

      90       100       110       120       130       140         
pF1KB9 EEGLDEAEGERPKKRGPKKRKMTKARLERSKLRRQKANARERNRMHDLNAALDNLRKVVP
         . . : .   ::    :..::. .:.. .:   : :.:::.:::::: :.:.::.:.:
XP_005 SSSTSSAAASSTKK---DKKQMTEPELQQLRL---KINSRERKRMHDLNIAMDGLREVMP
             90          100       110          120       130      

     150          160       170       180       190       200      
pF1KB9 CYSK---TQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAG
        :..   ..::::: :: ::.:::  :.. :.  ::  ::: .    ..  .:..     
XP_005 -YAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKR--LVSEIYGGHHAGFHPSA-----
         140       150       160       170         180             

        210       220       230       240       250                
pF1KB9 CLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAGAQCQAAG-------GLGG
       :  :     :    :  :.  :..  : . ::   : .  :.:   ::.       : : 
XP_005 CGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSSASLPGSGL
      190       200       210       220       230       240        

     260        270       280         290       300       310      
pF1KB9 GAAHALRT-HGYCAAYETLYAA--AGGGGASPDYNSSEYEGPLSPPLCLNGNFSLKQDSS
        .. ..:  ::   .  .  ::  .::::.:   .. .. : .  : :     :. :   
XP_005 PSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCP-C-----SMCQVPP
      250       260       270       280       290             300  

        320       330       340       350       360       370      
pF1KB9 PDHEKSYHYSMHYSALPGSRPTGHGLVFGSSAVRGGVHSENLLSYDMHLHHDRGPMYEEL
       : :. :   .:  ..::                                           
XP_005 PHHHVS---AMGAGSLPRLTSDAK                                    
               310       320                                       

>>NP_005797 (OMIM: 606386) oligodendrocyte transcription  (323 aa)
 initn: 246 init1: 126 opt: 275  Z-score: 180.1  bits: 41.8 E(85289): 0.0027
Smith-Waterman score: 275; 31.4% identity (52.3% similar) in 287 aa overlap (60-333:55-316)

      30        40        50        60        70        80         
pF1KB9 RSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEATLAEVKEEGELGGEEEEEEEE
                                     :::  :. ..    :  :  .: .      
NP_005 RSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMGSAGAHPGDKLGG--SGFKSSSSST
           30        40        50        60        70          80  

      90       100       110       120       130       140         
pF1KB9 EEGLDEAEGERPKKRGPKKRKMTKARLERSKLRRQKANARERNRMHDLNAALDNLRKVVP
         . . : .   ::    :..::. .:.. .:   : :.:::.:::::: :.:.::.:.:
NP_005 SSSTSSAAASSTKK---DKKQMTEPELQQLRL---KINSRERKRMHDLNIAMDGLREVMP
             90          100       110          120       130      

     150          160       170       180       190       200      
pF1KB9 CYSK---TQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAG
        :..   ..::::: :: ::.:::  :.. :.  ::  ::: .    ..  .:..     
NP_005 -YAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKR--LVSEIYGGHHAGFHPSA-----
         140       150       160       170         180             

        210       220       230       240       250                
pF1KB9 CLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAGAQCQAAG-------GLGG
       :  :     :    :  :.  :..  : . ::   : .  :.:   ::.       : : 
NP_005 CGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSSASLPGSGL
      190       200       210       220       230       240        

     260        270       280         290       300       310      
pF1KB9 GAAHALRT-HGYCAAYETLYAA--AGGGGASPDYNSSEYEGPLSPPLCLNGNFSLKQDSS
        .. ..:  ::   .  .  ::  .::::.:   .. .. : .  : :     :. :   
NP_005 PSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCP-C-----SMCQVPP
      250       260       270       280       290             300  

        320       330       340       350       360       370      
pF1KB9 PDHEKSYHYSMHYSALPGSRPTGHGLVFGSSAVRGGVHSENLLSYDMHLHHDRGPMYEEL
       : :. :   .:  ..::                                           
NP_005 PHHHVS---AMGAGSLPRLTSDAK                                    
               310       320                                       




382 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:48:05 2016 done: Fri Nov  4 17:48:06 2016
 Total Scan time:  8.090 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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