Result of FASTA (omim) for pF1KB9623
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9623, 146 aa
  1>>>pF1KB9623 146 - 146 aa - 146 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8489+/-0.000257; mu= 9.3027+/- 0.016
 mean_var=73.3695+/-14.538, 0's: 0 Z-trim(121.5): 14  B-trim: 0 in 0/53
 Lambda= 0.149733
 statistics sampled from 38145 (38159) to 38145 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.447), width:  16
 Scan time:  5.440

The best scores are:                                      opt bits E(85289)
NP_036449 (OMIM: 300402) protein LDOC1 [Homo sapie ( 146)  991 222.1 2.4e-58
NP_001071639 (OMIM: 300213) protein FAM127A [Homo  ( 113)  432 101.3 4.4e-22
NP_001035242 (OMIM: 609810) retrotransposon-derive ( 325)  185 48.2 1.3e-05
NP_001171891 (OMIM: 609810) retrotransposon-derive ( 359)  185 48.2 1.4e-05
NP_001165909 (OMIM: 609810) retrotransposon-derive ( 401)  185 48.2 1.5e-05
NP_055883 (OMIM: 609810) retrotransposon-derived p ( 708)  185 48.3 2.5e-05
NP_001171890 (OMIM: 609810) retrotransposon-derive ( 742)  185 48.3 2.6e-05
NP_001165908 (OMIM: 609810) retrotransposon-derive ( 784)  185 48.3 2.8e-05
NP_001128360 (OMIM: 611896) retrotransposon-like p (1358)  185 48.4 4.5e-05


>>NP_036449 (OMIM: 300402) protein LDOC1 [Homo sapiens]   (146 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 1168.3  bits: 222.1 E(85289): 2.4e-58
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPSCPVPFPETFNGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPSCPVPFPETFNGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRA
               70        80        90       100       110       120

              130       140      
pF1KB9 FLDEMKQCFGWDDDEDDDDEEEEDDY
       ::::::::::::::::::::::::::
NP_036 FLDEMKQCFGWDDDEDDDDEEEEDDY
              130       140      

>>NP_001071639 (OMIM: 300213) protein FAM127A [Homo sapi  (113 aa)
 initn: 426 init1: 426 opt: 432  Z-score: 517.5  bits: 101.3 E(85289): 4.4e-22
Smith-Waterman score: 432; 58.7% identity (82.7% similar) in 104 aa overlap (37-136:9-112)

         10        20        30        40            50        60  
pF1KB9 LLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPS----CPVPFPETFNGESS
                                     .: :   .:: .     :.::::::.:...
NP_001                       MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTD
                                     10        20        30        

             70        80        90       100       110       120  
pF1KB9 RLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFL
       :::::::::.:::.:.:: : .::.::.:::. ::: : .::.:::. .::.:.:::.::
NP_001 RLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFL
       40        50        60        70        80        90        

            130       140      
pF1KB9 DEMKQCFGWDDDEDDDDEEEEDDY
        :::. :::..:::          
NP_001 AEMKRVFGWEEDEDF         
      100       110            

>>NP_001035242 (OMIM: 609810) retrotransposon-derived pr  (325 aa)
 initn: 253 init1: 182 opt: 185  Z-score: 221.9  bits: 48.2 E(85289): 1.3e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:7-158)

                   10        20        30        40                
pF1KB9     MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRP-PS-------
             :::   .. :  .    : ::..:. :.. :. : ..: .::.: :        
NP_001 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE
               10        20        30        40        50        60

                        50        60        70        80        90 
pF1KB9 -----------------CPVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAF
                        ::  .:: :.:. . :  :..:   .:  .   :  : ..: :
NP_001 LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF
               70        80        90       100       110       120

             100       110       120       130       140           
pF1KB9 LISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDDDEDDDDEEEEDDY     
       . :..::.: .:.   .: .  .. .: ::. :::. :                      
NP_001 VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS
              130       140       150       160       170       180

NP_001 VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR
              190       200       210       220       230       240

>>NP_001171891 (OMIM: 609810) retrotransposon-derived pr  (359 aa)
 initn: 233 init1: 182 opt: 185  Z-score: 221.2  bits: 48.2 E(85289): 1.4e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:41-192)

                                           10        20        30  
pF1KB9                             MVDELVLLLHALLMRHRALSIENSQLMEQLRL
                                     :::   .. :  .    : ::..:. :.. 
NP_001 PPPPNNNNNNNSKHTGHKSACVPNMTERRRDELSEEINNLREKVMKQSEENNNLQSQVQK
               20        30        40        50        60        70

             40                                 50        60       
pF1KB9 LVCERASLLRQVRP-PS------------------------CPVPFPETFNGESSRLPEF
       :. : ..: .::.: :                         ::  .:: :.:. . :  :
NP_001 LTEENTTLREQVEPTPEDEDDDIELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPF
               80        90       100       110       120       130

        70        80        90       100       110       120       
pF1KB9 IVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQ
       ..:   .:  .   :  : ..: :. :..::.: .:.   .: .  .. .: ::. :::.
NP_001 MAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKH
              140       150       160       170       180       190

       130       140                                               
pF1KB9 CFGWDDDEDDDDEEEEDDY                                         
        :                                                          
NP_001 VFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQE
              200       210       220       230       240       250

>>NP_001165909 (OMIM: 609810) retrotransposon-derived pr  (401 aa)
 initn: 233 init1: 182 opt: 185  Z-score: 220.5  bits: 48.2 E(85289): 1.5e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:83-234)

                                           10        20        30  
pF1KB9                             MVDELVLLLHALLMRHRALSIENSQLMEQLRL
                                     :::   .. :  .    : ::..:. :.. 
NP_001 PPPPNNNNNNNSKHTGHKSACVPNMTERRRDELSEEINNLREKVMKQSEENNNLQSQVQK
             60        70        80        90       100       110  

             40                                 50        60       
pF1KB9 LVCERASLLRQVRP-PS------------------------CPVPFPETFNGESSRLPEF
       :. : ..: .::.: :                         ::  .:: :.:. . :  :
NP_001 LTEENTTLREQVEPTPEDEDDDIELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPF
            120       130       140       150       160       170  

        70        80        90       100       110       120       
pF1KB9 IVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQ
       ..:   .:  .   :  : ..: :. :..::.: .:.   .: .  .. .: ::. :::.
NP_001 MAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKH
            180       190       200       210       220       230  

       130       140                                               
pF1KB9 CFGWDDDEDDDDEEEEDDY                                         
        :                                                          
NP_001 VFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQE
            240       250       260       270       280       290  

>>NP_055883 (OMIM: 609810) retrotransposon-derived prote  (708 aa)
 initn: 253 init1: 182 opt: 185  Z-score: 216.6  bits: 48.3 E(85289): 2.5e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:7-158)

                   10        20        30        40                
pF1KB9     MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRP-PS-------
             :::   .. :  .    : ::..:. :.. :. : ..: .::.: :        
NP_055 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE
               10        20        30        40        50        60

                        50        60        70        80        90 
pF1KB9 -----------------CPVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAF
                        ::  .:: :.:. . :  :..:   .:  .   :  : ..: :
NP_055 LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF
               70        80        90       100       110       120

             100       110       120       130       140           
pF1KB9 LISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDDDEDDDDEEEEDDY     
       . :..::.: .:.   .: .  .. .: ::. :::. :                      
NP_055 VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS
              130       140       150       160       170       180

NP_055 VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR
              190       200       210       220       230       240

>>NP_001171890 (OMIM: 609810) retrotransposon-derived pr  (742 aa)
 initn: 253 init1: 182 opt: 185  Z-score: 216.3  bits: 48.3 E(85289): 2.6e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:41-192)

                                           10        20        30  
pF1KB9                             MVDELVLLLHALLMRHRALSIENSQLMEQLRL
                                     :::   .. :  .    : ::..:. :.. 
NP_001 PPPPNNNNNNNSKHTGHKSACVPNMTERRRDELSEEINNLREKVMKQSEENNNLQSQVQK
               20        30        40        50        60        70

             40                                 50        60       
pF1KB9 LVCERASLLRQVRP-PS------------------------CPVPFPETFNGESSRLPEF
       :. : ..: .::.: :                         ::  .:: :.:. . :  :
NP_001 LTEENTTLREQVEPTPEDEDDDIELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPF
               80        90       100       110       120       130

        70        80        90       100       110       120       
pF1KB9 IVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQ
       ..:   .:  .   :  : ..: :. :..::.: .:.   .: .  .. .: ::. :::.
NP_001 MAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKH
              140       150       160       170       180       190

       130       140                                               
pF1KB9 CFGWDDDEDDDDEEEEDDY                                         
        :                                                          
NP_001 VFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQE
              200       210       220       230       240       250

>>NP_001165908 (OMIM: 609810) retrotransposon-derived pr  (784 aa)
 initn: 253 init1: 182 opt: 185  Z-score: 215.9  bits: 48.3 E(85289): 2.8e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:83-234)

                                           10        20        30  
pF1KB9                             MVDELVLLLHALLMRHRALSIENSQLMEQLRL
                                     :::   .. :  .    : ::..:. :.. 
NP_001 PPPPNNNNNNNSKHTGHKSACVPNMTERRRDELSEEINNLREKVMKQSEENNNLQSQVQK
             60        70        80        90       100       110  

             40                                 50        60       
pF1KB9 LVCERASLLRQVRP-PS------------------------CPVPFPETFNGESSRLPEF
       :. : ..: .::.: :                         ::  .:: :.:. . :  :
NP_001 LTEENTTLREQVEPTPEDEDDDIELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPF
            120       130       140       150       160       170  

        70        80        90       100       110       120       
pF1KB9 IVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQ
       ..:   .:  .   :  : ..: :. :..::.: .:.   .: .  .. .: ::. :::.
NP_001 MAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKH
            180       190       200       210       220       230  

       130       140                                               
pF1KB9 CFGWDDDEDDDDEEEEDDY                                         
        :                                                          
NP_001 VFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQE
            240       250       260       270       280       290  

>>NP_001128360 (OMIM: 611896) retrotransposon-like prote  (1358 aa)
 initn: 150 init1: 150 opt: 185  Z-score: 212.1  bits: 48.4 E(85289): 4.5e-05
Smith-Waterman score: 185; 30.6% identity (60.3% similar) in 121 aa overlap (9-129:163-278)

                                     10        20        30        
pF1KB9                       MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERA
                                     : :..    .: .. ..: :: :  : :. 
NP_001 EEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRSIISLYFRMQDLKEQQR--VAEEI
            140       150       160       170       180         190

       40        50        60        70        80        90        
pF1KB9 SLLRQVRPPSCPVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTG
        :.. .   .  .: :. :.:.  .. ::::     .      : :: ..:...:. :.:
NP_001 -LIKGIN--AGQLPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSG
                 200       210       220       230       240       

      100       110       120       130       140                  
pF1KB9 EAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDDDEDDDDEEEEDDY            
        : ::.   .. .::..::. :::. :.. :                             
NP_001 LALEWAKALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRSATEYIDE
       250       260       270       280       290       300       

NP_001 FQSLVPILGWPDEVLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEKLAERRAM
       310       320       330       340       350       360       




146 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:46:16 2016 done: Fri Nov  4 17:46:17 2016
 Total Scan time:  5.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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