FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9607, 197 aa
  1>>>pF1KB9607 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3432+/-0.000727; mu= 1.5132+/- 0.043
 mean_var=250.0102+/-53.976, 0's: 0 Z-trim(118.0): 780  B-trim: 0 in 0/55
 Lambda= 0.081114
 statistics sampled from 17885 (18835) to 17885 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.579), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS12932.1 ZNF581 gene_id:51545|Hs108|chr19       ( 197) 1450 181.2 3.6e-46
CCDS12929.1 ZNF524 gene_id:147807|Hs108|chr19      ( 264)  642 86.8 1.3e-17
CCDS12931.1 ZNF580 gene_id:51157|Hs108|chr19       ( 172)  587 80.2 8.2e-16


>>CCDS12932.1 ZNF581 gene_id:51545|Hs108|chr19            (197 aa)
 initn: 1450 init1: 1450 opt: 1450  Z-score: 942.5  bits: 181.2 E(32554): 3.6e-46
Smith-Waterman score: 1450; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KB9 MLVLPSPCPQPLAFSSVETMEGPPRRTCRSPEPGPSSSIGSPQASSPPRPNHYLLIDTQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLVLPSPCPQPLAFSSVETMEGPPRRTCRSPEPGPSSSIGSPQASSPPRPNHYLLIDTQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VPYTVLVDEESQREPGASGAPGQKKCYSCPVCSRVFEYMSYLQRHSITHSEVKPFECDIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VPYTVLVDEESQREPGASGAPGQKKCYSCPVCSRVFEYMSYLQRHSITHSEVKPFECDIC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GKAFKRASHLARHHSIHLAGGGRPHGCPLCPRRFRDAGELAQHSRVHSGERPFQCPHCPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GKAFKRASHLARHHSIHLAGGGRPHGCPLCPRRFRDAGELAQHSRVHSGERPFQCPHCPR
              130       140       150       160       170       180

              190       
pF1KB9 RFMEQNTLQKHTRWKHP
       :::::::::::::::::
CCDS12 RFMEQNTLQKHTRWKHP
              190       

>>CCDS12929.1 ZNF524 gene_id:147807|Hs108|chr19           (264 aa)
 initn: 517 init1: 310 opt: 642  Z-score: 429.9  bits: 86.8 E(32554): 1.3e-17
Smith-Waterman score: 642; 53.2% identity (70.5% similar) in 190 aa overlap (13-197:39-222)

                                 10        20         30        40 
pF1KB9                   MLVLPSPCPQPLAFSSVETMEGP-PRRTCRSPEPGPSSSIGS
                                     : :: .:...  ::.  : :. :    . .
CCDS12 LPSPLPGEEEKPLALSPPVPRGRRGRRPGGATSSNRTLKASLPRKRGRPPKSGQEPPLVQ
       10        20        30        40        50        60        

              50            60        70        80        90       
pF1KB9 PQASSPPRPNH----YLLIDTQGVPYTVLVDEESQREPGASGAPGQKKCYSCPVCSRVFE
        :. . :  .      :::: ::::::  :.: :   : .:: : .:  . :::: :.: 
CCDS12 VQGVTAPVGSSGGSDLLLIDDQGVPYT--VSEGSAAGPEGSG-P-RKAPHFCPVCLRAFP
       70        80        90         100         110       120    

       100       110       120       130       140       150       
pF1KB9 YMSYLQRHSITHSEVKPFECDICGKAFKRASHLARHHSIHLAGGGRPHGCPLCPRRFRDA
       :.: :.::::.:::.:: .: .:::.:::.::: :: .::  .: ::  :::::::::.:
CCDS12 YLSDLERHSISHSELKPHQCKVCGKTFKRSSHLRRHCNIH--AGLRPFRCPLCPRRFREA
          130       140       150       160         170       180  

       160       170       180       190                           
pF1KB9 GELAQHSRVHSGERPFQCPHCPRRFMEQNTLQKHTRWKHP                    
       ::::.: ::::::::.::: :  :: : :::..:.. :::                    
CCDS12 GELAHHHRVHSGERPYQCPICRLRFTEANTLRRHAKRKHPEAMGVPLCAPDPGSEPPWDE
            190       200       210       220       230       240  

CCDS12 EGIPATAGAEEEEETEGKGEPA
            250       260    

>>CCDS12931.1 ZNF580 gene_id:51157|Hs108|chr19            (172 aa)
 initn: 613 init1: 418 opt: 587  Z-score: 397.4  bits: 80.2 E(32554): 8.2e-16
Smith-Waterman score: 587; 52.0% identity (70.5% similar) in 173 aa overlap (1-167:1-172)

               10        20        30         40        50         
pF1KB9 MLVLPSPCPQPLAFSSVETMEGPPRRTCRSPEP-GPSSSIGSPQASSPPRPNHYLLIDTQ
       ::.::   :.: . :: :.:. :: ..   :.  ::::. .:  .  ::: ...::::..
CCDS12 MLLLPPRPPHPRS-SSPEAMDPPPPKAPPFPKAEGPSSTPSSAAGPRPPRLGRHLLIDAN
               10         20        30        40        50         

      60         70            80        90       100       110    
pF1KB9 GVPYTVLVD-EESQREP----GASGAPGQKKCYSCPVCSRVFEYMSYLQRHSITHSEVKP
       :::::  :. ::  : :    .  : :: .: :::: :.:::     :: : ..::..::
CCDS12 GVPYTYTVQLEEEPRGPPQREAPPGEPGPRKGYSCPECARVFASPLRLQSHRVSHSDLKP
      60        70        80        90       100       110         

          120       130       140       150       160       170    
pF1KB9 FECDICGKAFKRASHLARHHSIHLAGGGRPHGCPLCPRRFRDAGELAQHSRVHSGERPFQ
       : :  :::::::.:::.::.. : : .: :: ::::::::.::.::::: :.:       
CCDS12 FTCGACGKAFKRSSHLSRHRATHRARAGPPHTCPLCPRRFQDAAELAQHVRLH       
     120       130       140       150       160       170         

          180       190       
pF1KB9 CPHCPRRFMEQNTLQKHTRWKHP




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:40:16 2016 done: Fri Nov  4 17:40:17 2016
 Total Scan time:  2.480 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]