Result of FASTA (omim) for pF1KB9584
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9584, 270 aa
  1>>>pF1KB9584 270 - 270 aa - 270 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8436+/-0.000366; mu= 0.9166+/- 0.023
 mean_var=268.7335+/-54.966, 0's: 0 Z-trim(122.7): 19  B-trim: 0 in 0/52
 Lambda= 0.078237
 statistics sampled from 41353 (41376) to 41353 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.485), width:  16
 Scan time:  6.920

The best scores are:                                      opt bits E(85289)
NP_001161860 (OMIM: 602937,614431,614433) cbp/p300 ( 270) 1944 231.8 1.1e-60
NP_006070 (OMIM: 602937,614431,614433) cbp/p300-in ( 270) 1944 231.8 1.1e-60
NP_001161861 (OMIM: 602937,614431,614433) cbp/p300 ( 275) 1944 231.8 1.1e-60
NP_001138359 (OMIM: 300149) cbp/p300-interacting t ( 193)  258 41.3  0.0016
NP_004134 (OMIM: 300149) cbp/p300-interacting tran ( 193)  258 41.3  0.0016
NP_001138358 (OMIM: 300149) cbp/p300-interacting t ( 193)  258 41.3  0.0016
XP_011529260 (OMIM: 300149) PREDICTED: cbp/p300-in ( 219)  258 41.4  0.0018
NP_001138357 (OMIM: 300149) cbp/p300-interacting t ( 219)  258 41.4  0.0018


>>NP_001161860 (OMIM: 602937,614431,614433) cbp/p300-int  (270 aa)
 initn: 1944 init1: 1944 opt: 1944  Z-score: 1210.7  bits: 231.8 E(85289): 1.1e-60
Smith-Waterman score: 1944; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB9 MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEHIHYGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEHIHYGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQKLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQKLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSSTPGGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSSTPGGSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGLDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGLDRI
              190       200       210       220       230       240

              250       260       270
pF1KB9 KELPELWLGQNEFDFMTDFVCKQQPSRVSC
       ::::::::::::::::::::::::::::::
NP_001 KELPELWLGQNEFDFMTDFVCKQQPSRVSC
              250       260       270

>>NP_006070 (OMIM: 602937,614431,614433) cbp/p300-intera  (270 aa)
 initn: 1944 init1: 1944 opt: 1944  Z-score: 1210.7  bits: 231.8 E(85289): 1.1e-60
Smith-Waterman score: 1944; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB9 MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEHIHYGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEHIHYGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQKLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQKLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSSTPGGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSSTPGGSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGLDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGLDRI
              190       200       210       220       230       240

              250       260       270
pF1KB9 KELPELWLGQNEFDFMTDFVCKQQPSRVSC
       ::::::::::::::::::::::::::::::
NP_006 KELPELWLGQNEFDFMTDFVCKQQPSRVSC
              250       260       270

>>NP_001161861 (OMIM: 602937,614431,614433) cbp/p300-int  (275 aa)
 initn: 1944 init1: 1944 opt: 1944  Z-score: 1210.6  bits: 231.8 E(85289): 1.1e-60
Smith-Waterman score: 1944; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:6-275)

                    10        20        30        40        50     
pF1KB9      MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEH
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGLEMADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEH
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 IHYGAGNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IHYGAGNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQ
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB9 LQKLNNQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQKLNNQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSST
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB9 PGGSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGGSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEM
              190       200       210       220       230       240

         240       250       260       270
pF1KB9 GLDRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC
       :::::::::::::::::::::::::::::::::::
NP_001 GLDRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC
              250       260       270     

>>NP_001138359 (OMIM: 300149) cbp/p300-interacting trans  (193 aa)
 initn: 308 init1: 248 opt: 258  Z-score: 184.1  bits: 41.3 E(85289): 0.0016
Smith-Waterman score: 310; 36.0% identity (59.3% similar) in 172 aa overlap (89-259:48-189)

       60        70        80        90       100       110        
pF1KB9 GAGNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQK
                                     :..  :...  : :..:.:. . .      
NP_001 AKEDANQEMSSVAYSNLAVKDRKAVAILHYPGVASNGTKASGAPTSSSGSPIGSPTTTPP
        20        30        40        50        60        70       

      120       130       140       150       160        170       
pF1KB9 LNNQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSG-GSSTPGGSGGSSTPG
        .   :: :: :  : . ..             :..  : ...: ...:::       ::
NP_001 TKPPSFNLHPAP--HLLASM-------------HLQKLNSQYQGMAAATPG------QPG
        80          90                    100       110            

       180       190       200       210       220       230       
pF1KB9 GSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGL
        .:  ..   :.. .:. : :   :.. :. ::      .::.: .:::::::::.:.::
NP_001 EAGPLQNWDFGAQAGGAESLS---PSAGAQSPA------IIDSDPVDEEVLMSLVVELGL
        120       130          140             150       160       

       240       250       260       270
pF1KB9 DRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC
       :: .:::::::::::::: .::           
NP_001 DRANELPELWLGQNEFDFTADFPSSC       
       170       180       190          

>>NP_004134 (OMIM: 300149) cbp/p300-interacting transact  (193 aa)
 initn: 308 init1: 248 opt: 258  Z-score: 184.1  bits: 41.3 E(85289): 0.0016
Smith-Waterman score: 310; 36.0% identity (59.3% similar) in 172 aa overlap (89-259:48-189)

       60        70        80        90       100       110        
pF1KB9 GAGNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQK
                                     :..  :...  : :..:.:. . .      
NP_004 AKEDANQEMSSVAYSNLAVKDRKAVAILHYPGVASNGTKASGAPTSSSGSPIGSPTTTPP
        20        30        40        50        60        70       

      120       130       140       150       160        170       
pF1KB9 LNNQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSG-GSSTPGGSGGSSTPG
        .   :: :: :  : . ..             :..  : ...: ...:::       ::
NP_004 TKPPSFNLHPAP--HLLASM-------------HLQKLNSQYQGMAAATPG------QPG
        80          90                    100       110            

       180       190       200       210       220       230       
pF1KB9 GSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGL
        .:  ..   :.. .:. : :   :.. :. ::      .::.: .:::::::::.:.::
NP_004 EAGPLQNWDFGAQAGGAESLS---PSAGAQSPA------IIDSDPVDEEVLMSLVVELGL
        120       130          140             150       160       

       240       250       260       270
pF1KB9 DRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC
       :: .:::::::::::::: .::           
NP_004 DRANELPELWLGQNEFDFTADFPSSC       
       170       180       190          

>>NP_001138358 (OMIM: 300149) cbp/p300-interacting trans  (193 aa)
 initn: 308 init1: 248 opt: 258  Z-score: 184.1  bits: 41.3 E(85289): 0.0016
Smith-Waterman score: 310; 36.0% identity (59.3% similar) in 172 aa overlap (89-259:48-189)

       60        70        80        90       100       110        
pF1KB9 GAGNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQK
                                     :..  :...  : :..:.:. . .      
NP_001 AKEDANQEMSSVAYSNLAVKDRKAVAILHYPGVASNGTKASGAPTSSSGSPIGSPTTTPP
        20        30        40        50        60        70       

      120       130       140       150       160        170       
pF1KB9 LNNQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSG-GSSTPGGSGGSSTPG
        .   :: :: :  : . ..             :..  : ...: ...:::       ::
NP_001 TKPPSFNLHPAP--HLLASM-------------HLQKLNSQYQGMAAATPG------QPG
        80          90                    100       110            

       180       190       200       210       220       230       
pF1KB9 GSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGL
        .:  ..   :.. .:. : :   :.. :. ::      .::.: .:::::::::.:.::
NP_001 EAGPLQNWDFGAQAGGAESLS---PSAGAQSPA------IIDSDPVDEEVLMSLVVELGL
        120       130          140             150       160       

       240       250       260       270
pF1KB9 DRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC
       :: .:::::::::::::: .::           
NP_001 DRANELPELWLGQNEFDFTADFPSSC       
       170       180       190          

>>XP_011529260 (OMIM: 300149) PREDICTED: cbp/p300-intera  (219 aa)
 initn: 308 init1: 248 opt: 258  Z-score: 183.4  bits: 41.4 E(85289): 0.0018
Smith-Waterman score: 310; 36.0% identity (59.3% similar) in 172 aa overlap (89-259:74-215)

       60        70        80        90       100       110        
pF1KB9 GAGNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQK
                                     :..  :...  : :..:.:. . .      
XP_011 AKEDANQEMSSVAYSNLAVKDRKAVAILHYPGVASNGTKASGAPTSSSGSPIGSPTTTPP
            50        60        70        80        90       100   

      120       130       140       150       160        170       
pF1KB9 LNNQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSG-GSSTPGGSGGSSTPG
        .   :: :: :  : . ..             :..  : ...: ...:::       ::
XP_011 TKPPSFNLHPAP--HLLASM-------------HLQKLNSQYQGMAAATPG------QPG
           110         120                    130             140  

       180       190       200       210       220       230       
pF1KB9 GSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGL
        .:  ..   :.. .:. : :   :.. :. ::      .::.: .:::::::::.:.::
XP_011 EAGPLQNWDFGAQAGGAESLS---PSAGAQSPA------IIDSDPVDEEVLMSLVVELGL
            150       160          170             180       190   

       240       250       260       270
pF1KB9 DRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC
       :: .:::::::::::::: .::           
XP_011 DRANELPELWLGQNEFDFTADFPSSC       
           200       210                

>>NP_001138357 (OMIM: 300149) cbp/p300-interacting trans  (219 aa)
 initn: 308 init1: 248 opt: 258  Z-score: 183.4  bits: 41.4 E(85289): 0.0018
Smith-Waterman score: 310; 36.0% identity (59.3% similar) in 172 aa overlap (89-259:74-215)

       60        70        80        90       100       110        
pF1KB9 GAGNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQK
                                     :..  :...  : :..:.:. . .      
NP_001 AKEDANQEMSSVAYSNLAVKDRKAVAILHYPGVASNGTKASGAPTSSSGSPIGSPTTTPP
            50        60        70        80        90       100   

      120       130       140       150       160        170       
pF1KB9 LNNQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSG-GSSTPGGSGGSSTPG
        .   :: :: :  : . ..             :..  : ...: ...:::       ::
NP_001 TKPPSFNLHPAP--HLLASM-------------HLQKLNSQYQGMAAATPG------QPG
           110         120                    130             140  

       180       190       200       210       220       230       
pF1KB9 GSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGL
        .:  ..   :.. .:. : :   :.. :. ::      .::.: .:::::::::.:.::
NP_001 EAGPLQNWDFGAQAGGAESLS---PSAGAQSPA------IIDSDPVDEEVLMSLVVELGL
            150       160          170             180       190   

       240       250       260       270
pF1KB9 DRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC
       :: .:::::::::::::: .::           
NP_001 DRANELPELWLGQNEFDFTADFPSSC       
           200       210                




270 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:29:40 2016 done: Fri Nov  4 17:29:41 2016
 Total Scan time:  6.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com