GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:28:56

Sequence gi568815587r:8837619_9038161 : 200543 bp : 43.51% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -     40     35    6                               1.05
 1.03 Term -  19670  19515  156  2  0   81   44    87 0.337   1.53
 1.02 Intr -  33230  33148   83  0  2   82   61    20 0.291  -1.94
 1.01 Init -  33447  33336  112  0  1   48   99   145 0.843   9.97
 1.00 Prom -  41414  41375   40                              -6.66

 2.00 Prom +  54078  54117   40                              -5.06
 2.01 Init +  56008  57134 1127  0  2   60   53   296 0.603  16.97
 2.02 Term +  57566  57638   73  2  1   72   50    38 0.407  -4.22
 2.03 PlyA +  58626  58631    6                               1.05

 3.00 Prom +  69302  69341   40                              -4.66
 3.01 Init +  73832  74053  222  1  0  103   78   136 0.630  12.67
 3.02 Intr +  77208  77312  105  2  0   53  111    41 0.890   3.31
 3.03 Intr +  81719  81856  138  1  0  128  -14   153 0.015   9.76
 3.04 Intr +  88027  88161  135  0  0   94   33    75 0.002   3.36
 3.05 Intr +  94428  94544  117  2  0  105  105    33 0.440   7.36
 3.06 Term +  95160  95234   75  2  0   60   55    71 0.254  -1.16
 3.07 PlyA +  96994  96999    6                               1.05

 4.03 PlyA -  98997  98992    6                              -0.45
 4.02 Term - 100555  99998  558  1  0   73   44   464 0.339  34.85
 4.01 Init - 107771 107541  231  2  0   63   47    86 0.170   0.26
 4.00 Prom - 108261 108222   40                              -5.56

 5.06 PlyA - 108420 108415    6                               1.05
 5.05 Term - 110857 110702  156  1  0   58   32   194 0.992   8.73
 5.04 Intr - 115719 115585  135  0  0   54   98    19 0.525   0.26
 5.03 Intr - 118680 118572  109  2  1   79   93    93 0.884   9.19
 5.02 Intr - 124565 124474   92  2  2   70  111     4 0.831  -0.31
 5.01 Init - 126695 126591  105  2  0   98  113   274 0.999  29.12
 5.00 Prom - 133110 133071   40                              -7.36

 6.17 PlyA - 133154 133149    6                               1.05
 6.16 Term - 134968 134905   64  0  1  102   42    72 0.220   1.36
 6.15 Intr - 146351 146257   95  2  2   43   89   103 0.570   4.66
 6.14 Intr - 146506 146454   53  2  2   88  116    26 0.996   4.03
 6.13 Intr - 148232 148093  140  1  2   45   99   101 0.997   7.01
 6.12 Intr - 150012 149930   83  0  2   88   98    18 0.975   1.24
 6.11 Intr - 150643 150500  144  1  0   55   95   101 0.447   7.98
 6.10 Intr - 166304 166144  161  0  2   34   89   366 0.361  31.01
 6.09 Intr - 166953 166731  223  0  1   68   99   149 0.105  11.70
 6.08 Intr - 182453 182327  127  1  1   97   28    27 0.002  -1.72
 6.07 Intr - 183579 183449  131  0  2   87    7   106 0.177   1.89
 6.06 Intr - 184337 184258   80  0  2   46  113    80 0.914   5.57
 6.05 Intr - 185138 185094   45  0  0   80  107     9 0.518   0.38
 6.04 Intr - 188236 188084  153  2  0   92  103   192 0.998  21.14
 6.03 Intr - 189943 189746  198  2  0   80   38   329 0.980  26.42
 6.02 Intr - 193307 193140  168  0  0   92  105    73 0.988   9.32
 6.01 Intr - 196178 196008  171  0  0   49   94    54 0.205   2.01

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  81719  81862  144  1  0  128   41   150 0.983  12.21
S.002 Init + 180254 180314   61  1  1   91   80   100 0.890   8.92


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:8837619_9038161|GENSCAN_predicted_peptide_1|116_aa
MPARRPPSLQERLLLRAARLPARPHPGAAPGPAGERRAVSSSVSTRVGAAAGAEERGWWG
PPSRARFVVVFGEDDMKLSGNMCILSFLIEFGDKKEETWYFALILYAAINDILVSR

>gi568815587r:8837619_9038161|GENSCAN_predicted_CDS_1|351_bp
atgcctgcccgccgcccgccctctctgcaggagcggctcctcctccgggccgcgcggctc
ccggcgagaccccatccaggcgccgcgcccggcccggctggggaacgcagagcggtgtcc
agctccgtgagtacgcgcgtgggggccgccgcaggcgcagaggagcggggctggtggggt
ccgccctcccgggcgagatttgtggtggtttttggagaagatgacatgaaattatcaggc
aatatgtgtatactcagctttctaatagagtttggggataagaaggaggagacctggtat
tttgccttaattctgtatgcggctataaatgacattttagtatccagatga

>gi568815587r:8837619_9038161|GENSCAN_predicted_peptide_2|399_aa
MSELPFTTASKRIKYLVIQLTRDVKDLFKENYKPLLNETKEDTNKWKNIPCSWIGRINIV
KMAILPKVIYRFNAIPMKLPTTFFTELEKTTVKFIWNQKRAHIAKSILSQKNKAGGIMLP
DFKLYYKATVTKTAWYWYQNRDLDQWNRTEPSEIIPDIYNHLIFDEPDKNKKWGKDSLFN
KWCWENLLAICRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGIGKD
FISKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQPTKWEKIFATYSSDKGLISRI
YNELQQIYKKKTNNPIKKWAKDMNRHFSKEDIYAANRHIKKCSPSLAIREMQIKTTMRYH
LTPIRMAVIKKSGNNRWEVNNENTWTQEGEHHTPGPVVG

>gi568815587r:8837619_9038161|GENSCAN_predicted_CDS_2|1200_bp
atgagtgaactcccattcacaactgcttcaaagagaataaaatacctagtaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccgttgctcaacgaaacaaaa
gaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatattgtg
aaaatggccatactacccaaggtaatttatagattcaatgccatccccatgaagctacca
acgactttcttcacagaattggaaaaaactactgtaaagttcatatggaaccaaaaaaga
gcccacattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcatgctacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaac
agagatctagaccaatggaacagaacagagccctcagaaataataccagacatctacaac
catctgatctttgacgaacctgacaaaaacaagaaatggggaaaggattccctatttaat
aaatggtgctgggaaaacttgctagccatatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaattaattcaagatggattaaagacttaaatgttcgacctaaaacc
ataaaaaccctagaagaaaacttaggcaataccattcaggacataggcataggcaaggac
ttcatatctaaaacaccaaaagcaatggcaacaaaagcgaaaattgacaaatgggatcta
attaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacct
acaaaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatc
tacaatgaactccaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggca
aaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatcaaa
aaatgctcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccat
ctcacaccaattagaatggcggtcattaaaaagtcaggaaacaacaggtgggaagtgaac
aatgagaacacttggacacaggaaggggaacatcacacaccagggcctgttgtggggtag

>gi568815587r:8837619_9038161|GENSCAN_predicted_peptide_3|263_aa
MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
KQPAAGPQRVLPGEKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQAENISKDLYIE
VYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLVFPEEDEEEETARGACIATFSSLGPSRG
KSCAVGSNSGSSLAMTSEVLEASLSTKVYHQQPRTKEKEKGIHFPQRGRDRYLARGLCPP
CSEETAATRAQDQAALLQPTRAP

>gi568815587r:8837619_9038161|GENSCAN_predicted_CDS_3|792_bp
atggacaactgtttggcggccgcagcgctgaatggggtggaccgacgttccctgcagcgt
tcagcaaggctggctctagaagtgctggagagggccaagaggagggcggtggactggcat
gccctggagcgtcccaaaggctgcatgggggtccttgcccgggaggcgccccacctagag
aaacagccggcagccggcccgcagcgcgttctcccgggagagaaatattattcatctgtg
ccagaggaaggaggggcaacccatgtctatcgttatcacagaggcgagtcgaagctgcac
atgtgcttggacatagggaatggtcaggctgagaacatctctaaggacctctacatagaa
gtatatccagggacctattctgtcactgtgggctcaaatgacttaaccaagaagactcat
gtggtagcagttgattctggacaaagcgtggacctggtcttccctgaggaggatgaggag
gaagaaacagccaggggagcgtgcattgctactttctcctctttaggaccttccaggggc
aaaagctgtgctgtgggctccaactctggaagttctctggccatgacttctgaggtcctg
gaagcaagtctgtccaccaaggtctaccaccaacagccaagaacaaaggaaaaagaaaag
ggcatccacttcccccagaggggcagagacaggtaccttgcaaggggcttgtgcccgccc
tgttcagaggagacagctgccaccagggcccaagatcaagccgcactgctgcagcccacc
agagccccgtga

>gi568815587r:8837619_9038161|GENSCAN_predicted_peptide_4|262_aa
MGKSPGHLTKEEIQMANKHMKRCSTSYVIREMQTETTMGYQYTPIRMTKIYDTDNTKCSQ
GCGATGTFFYCWWEYKMVKEEMMDNRGNSSLPDKLPIFPDSARLPLTRSFYLEPMVTFHV
HPEAPVSSPYSEELPRLPFPSDSLILGNYSEPCPFSFPMPYPNYRGCEYSYGPAFTRKRN
ERERQRVKCVNEGYAQLRHHLPEEYLEKRLSKVETLRAAIKYINYLQSLLYPDKAETKNN
PGKVSSMIATTSHHADPMFRIV

>gi568815587r:8837619_9038161|GENSCAN_predicted_CDS_4|789_bp
atgggcaaaagtcctggacacctcaccaaagaggagatacagatggcaaataagcatatg
aaaagatgttccacatcatatgtcatcagggaaatgcaaactgaaacaacaatgggatac
caatacacacctattagaatgaccaaaatctacgacactgataacaccaaatgctctcaa
ggatgtggagcaacaggaactttcttttattgctggtgggaatacaaaatggttaaagag
gaaatgatggacaacagaggcaactctagtctacctgacaaacttcctatcttccctgat
tctgcccgcttgccactgaccaggtccttctatctggagcccatggtcactttccacgtg
cacccagaggccccggtgtcatccccttactctgaggagctgccacggctgccttttccc
agcgactctcttatcctgggaaattacagtgaaccctgccccttctctttcccgatgcct
tatccaaattacagagggtgcgagtactcctacgggccagccttcacccggaaaaggaat
gagcgggaaaggcagcgggtgaaatgtgtcaatgaaggctacgcccagctccgccatcat
ctgccagaggagtatttggagaagcgactcagcaaagtggaaaccctcagagctgcgatc
aagtacattaactacctgcagtctcttctgtaccctgataaagctgagaccaagaataac
cctggaaaagtttcctccatgatagcaaccaccagccaccatgctgaccctatgttcaga
attgtttga

>gi568815587r:8837619_9038161|GENSCAN_predicted_peptide_5|198_aa
MATLWGGLLRLGSLLSLSCLALSVLLLAQLSDAAKNFEDVRCKCICPPYKENSGHIYNKN
ISQKDCDCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMV
YLTLVEPILKRRLFGHAQLIQSDDDIGDHQPFANAHDVLARSRSRANVLNKVEYAQQRWK
LQVQEQRKSVFDRHVVLS

>gi568815587r:8837619_9038161|GENSCAN_predicted_CDS_5|597_bp
atggcgaccctgtggggaggccttcttcggcttggctccttgctcagcctgtcgtgcctg
gcgctttccgtgctgctgctggcgcagctgtcagacgccgccaagaatttcgaggatgtc
agatgtaaatgtatctgccctccctataaagaaaattctgggcatatttataataagaac
atatctcagaaagattgtgattgccttcatgttgtggagcccatgcctgtgcgggggcct
gatgtagaagcatactgtctacgctgtgaatgcaaatatgaagaaagaagctctgtcaca
atcaaggttaccattataatttatctctccattttgggccttctacttctgtacatggta
tatcttactctggttgagcccatactgaagaggcgcctctttggacatgcacagttgata
cagagtgatgatgatattggggatcaccagccttttgcaaatgcacacgatgtgctagcc
cgctcccgcagtcgagccaacgtgctgaacaaggtagaatatgcacagcagcgctggaag
cttcaagtccaagagcagcgaaagtctgtctttgaccggcatgttgtcctcagctaa

>gi568815587r:8837619_9038161|GENSCAN_predicted_peptide_6|678_aa
XSCRAGTYYDGARERCILCPNGTFQNEEGQMTCEPCPRPGNSGALKTPEAWNMSECGGLC
QPGEYSADGFAPCQLCALGTFQPEAGRTSCFPCGGGLATKHQGATSFQDCETRDRRCGGE
LGDFTGYIESPNYPGNYPANTECTWTINPPPKRRILIVVPEIFLPIEDDCGDYLVMRKTS
SSNSVTTYETCQTYERPIAFTSRSKKLWIQFKSNEGNSARGFQVPYVTYDGQREEEKQRS
LREVTEDYQELIEDIVRDGRLYASENHQEILKDKKLIKALFDVLAHPQNYFKYTAQESRE
MFPRSFIRLLRSKVSSLKCERRTLLRGHEQPLEGWSHSLTVTALPETPPECHTIISLWSR
GPVGGDRPEVGEIRSAPNLGGSRQSSGPGRWTLEPRLAAWRCVSEKPSSGAGGGTRGMAR
LSVIPGSATAWTGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKL
GSSKDMRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDV
KALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLR
LDCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNPP
ITGPGDGVDDVLAPHYYF

>gi568815587r:8837619_9038161|GENSCAN_predicted_CDS_6|2037_bp
ntcagttgcagggctgggacctattatgatggagcacgagaacgctgcattttatgtcca
aatggaaccttccaaaatgaggaaggacaaatgacttgtgaaccatgcccaagaccagga
aattctggggccctgaagaccccagaagcttggaatatgtctgaatgtggaggtctgtgt
caacctggtgaatattctgcagatggctttgcaccttgccagctctgtgccctgggcacg
ttccagcctgaagctggtcgaacttcctgcttcccctgtggaggaggccttgccaccaaa
catcagggagctacttcctttcaggactgtgaaaccagagacagaagatgtggaggggag
ctgggagatttcactgggtacattgaatccccaaactacccaggcaattacccagccaac
accgagtgtacgtggaccatcaacccaccccccaagcgccgcatcctgatcgtggtccct
gagatcttcctgcccatagaggacgactgtggggactatctggtgatgcggaaaacctct
tcatccaattctgtgacaacatatgaaacctgccagacctacgaacgccccatcgccttc
acctccaggtcaaagaagctgtggattcagttcaagtccaatgaagggaacagcgctaga
gggttccaggtcccatacgtgacatatgatggtcagagagaagaagaaaagcaaagaagc
ctcagagaagtaaccgaggactaccaggaactcattgaagacatagttcgagatggcagg
ctctatgcatctgagaaccatcaggaaatacttaaggataagaaacttatcaaggctctg
tttgatgtcctggcccatccccagaactatttcaagtacacagcccaggagtcccgagag
atgtttccaagatcgttcatccgattgctacgttccaaagtgtccagtctcaaatgtgag
agacggactctgctccgtggacatgagcagccccttgaagggtggtctcattctctaaca
gtaacagcactgccagaaacaccccctgaatgccacacgatcatctcactttggtcacgt
ggcccggtgggtggggaccgacctgaagttggagaaatccggagcgctcccaacctcgga
gggagtcgccagtcctccgggcccgggcggtggaccctggagccccggctggcggcgtgg
aggtgcgtttctgagaagccgagcagcggcgcgggcggcgggactcgaggcatggcccgg
ctgtcggtgatccccgggtcggccacggcgtggacagggctcctcactgagggcggccgc
aaggagaccgacatgcgggaggcggcgtcactgcgacagcagcgccggatgaagcaggcg
gtgcagttcatccacaaggactccgccgacctgctgcccctggacggcctcaagaagctg
ggctcgtccaaggacatgaggcgcctcatggaaaccaacctgtctaagctccgaagcggt
ccccgtgtcccttgggcctctaagacgaacaaactcaatcaggctaagtctgaggggcta
aagaagtctgaggaggatgacatgattttggtttcttgccagtgtgctggaaaggatgtg
aaagccttggttgacacaggctgcctatataatctcatctctttggcctgtgtggacaga
ttgggactcaaggagcatgtcaaatcccacaagcatgaaggagaaaagctttctctaccc
cggcatctcaaagtagtgggccagattgagcacctagtgatcacactgggctccctccgc
ctggactgcccagcagctgtggttgatgacaatgagaaaaacttgtcccttggtctacag
actctccgatctctgaagtgcatcataaacttggataagcaccggctgatcatggggaag
acagacaaggaagaaatcccttttgtggagacagtctctttgaatgaagacaatcctcct
attactggtcctggagatggggtagatgatgttcttgctcctcattactacttctag