FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9563, 2322 aa 1>>>pF1KB9563 2322 - 2322 aa - 2322 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5840+/-0.000985; mu= 20.4066+/- 0.060 mean_var=111.0755+/-22.059, 0's: 0 Z-trim(107.5): 37 B-trim: 0 in 0/54 Lambda= 0.121693 statistics sampled from 9562 (9591) to 9562 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.295), width: 16 Scan time: 6.540 The best scores are: opt bits E(32554) CCDS10284.1 CSPG4 gene_id:1464|Hs108|chr15 (2322) 15395 2715.3 0 >>CCDS10284.1 CSPG4 gene_id:1464|Hs108|chr15 (2322 aa) initn: 15395 init1: 15395 opt: 15395 Z-score: 14599.1 bits: 2715.3 E(32554): 0 Smith-Waterman score: 15395; 100.0% identity (100.0% similar) in 2322 aa overlap (1-2322:1-2322) 10 20 30 40 50 60 pF1KB9 MQSGPRPPLPAPGLALALTLTMLARLASAASFFGENHLEVPVATALTDIDLQLQFSTSQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MQSGPRPPLPAPGLALALTLTMLARLASAASFFGENHLEVPVATALTDIDLQLQFSTSQP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 EALLLLAAGPADHLLLQLYSGRLQVRLVLGQEELRLQTPAETLLSDSIPHTVVLTVVEGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EALLLLAAGPADHLLLQLYSGRLQVRLVLGQEELRLQTPAETLLSDSIPHTVVLTVVEGW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 ATLSVDGFLNASSAVPGAPLEVPYGLFVGGTGTLGLPYLRGTSRPLRGCLHAATLNGRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 ATLSVDGFLNASSAVPGAPLEVPYGLFVGGTGTLGLPYLRGTSRPLRGCLHAATLNGRSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 LRPLTPDVHEGCAEEFSASDDVALGFSGPHSLAAFPAWGTQDEGTLEFTLTTQSRQAPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LRPLTPDVHEGCAEEFSASDDVALGFSGPHSLAAFPAWGTQDEGTLEFTLTTQSRQAPLA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 FQAGGRRGDFIYVDIFEGHLRAVVEKGQGTVLLHNSVPVADGQPHEVSVHINAHRLEISV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 FQAGGRRGDFIYVDIFEGHLRAVVEKGQGTVLLHNSVPVADGQPHEVSVHINAHRLEISV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 DQYPTHTSNRGVLSYLEPRGSLLLGGLDAEASRHLQEHRLGLTPEATNASLLGCMEDLSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 DQYPTHTSNRGVLSYLEPRGSLLLGGLDAEASRHLQEHRLGLTPEATNASLLGCMEDLSV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 NGQRRGLREALLTRNMAAGCRLEEEEYEDDAYGHYEAFSTLAPEAWPAMELPEPCVPEPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 NGQRRGLREALLTRNMAAGCRLEEEEYEDDAYGHYEAFSTLAPEAWPAMELPEPCVPEPG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 LPPVFANFTQLLTISPLVVAEGGTAWLEWRHVQPTLDLMEAELRKSQVLFSVTRGARHGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LPPVFANFTQLLTISPLVVAEGGTAWLEWRHVQPTLDLMEAELRKSQVLFSVTRGARHGE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 LELDIPGAQARKMFTLLDVVNRKARFIHDGSEDTSDQLVLEVSVTARVPMPSCLRRGQTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LELDIPGAQARKMFTLLDVVNRKARFIHDGSEDTSDQLVLEVSVTARVPMPSCLRRGQTY 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 LLPIQVNPVNDPPHIIFPHGSLMVILEHTQKPLGPEVFQAYDPDSACEGLTFQVLGTSSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LLPIQVNPVNDPPHIIFPHGSLMVILEHTQKPLGPEVFQAYDPDSACEGLTFQVLGTSSG 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 LPVERRDQPGEPATEFSCRELEAGSLVYVHRGGPAQDLTFRVSDGLQASPPATLKVVAIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LPVERRDQPGEPATEFSCRELEAGSLVYVHRGGPAQDLTFRVSDGLQASPPATLKVVAIR 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB9 PAIQIHRSTGLRLAQGSAMPILPANLSVETNAVGQDVSVLFRVTGALQFGELQKQGAGGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PAIQIHRSTGLRLAQGSAMPILPANLSVETNAVGQDVSVLFRVTGALQFGELQKQGAGGV 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB9 EGAEWWATQAFHQRDVEQGRVRYLSTDPQHHAYDTVENLALEVQVGQEILSNLSFPVTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EGAEWWATQAFHQRDVEQGRVRYLSTDPQHHAYDTVENLALEVQVGQEILSNLSFPVTIQ 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB9 RATVWMLRLEPLHTQNTQQETLTTAHLEATLEEAGPSPPTFHYEVVQAPRKGNLQLQGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RATVWMLRLEPLHTQNTQQETLTTAHLEATLEEAGPSPPTFHYEVVQAPRKGNLQLQGTR 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB9 LSDGQGFTQDDIQAGRVTYGATARASEAVEDTFRFRVTAPPYFSPLYTFPIHIGGDPDAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LSDGQGFTQDDIQAGRVTYGATARASEAVEDTFRFRVTAPPYFSPLYTFPIHIGGDPDAP 850 860 870 880 890 900 910 920 930 940 950 960 pF1KB9 VLTNVLLVVPEGGEGVLSADHLFVKSLNSASYLYEVMERPRHGRLAWRGTQDKTTMVTSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VLTNVLLVVPEGGEGVLSADHLFVKSLNSASYLYEVMERPRHGRLAWRGTQDKTTMVTSF 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KB9 TNEDLLRGRLVYQHDDSETTEDDIPFVATRQGESSGDMAWEEVRGVFRVAIQPVNDHAPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 TNEDLLRGRLVYQHDDSETTEDDIPFVATRQGESSGDMAWEEVRGVFRVAIQPVNDHAPV 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KB9 QTISRIFHVARGGRRLLTTDDVAFSDADSGFADAQLVLTRKDLLFGSIVAVDEPTRPIYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 QTISRIFHVARGGRRLLTTDDVAFSDADSGFADAQLVLTRKDLLFGSIVAVDEPTRPIYR 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KB9 FTQEDLRKRRVLFVHSGADRGWIQLQVSDGQHQATALLEVQASEPYLRVANGSSLVVPQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 FTQEDLRKRRVLFVHSGADRGWIQLQVSDGQHQATALLEVQASEPYLRVANGSSLVVPQG 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KB9 GQGTIDTAVLHLDTNLDIRSGDEVHYHVTAGPRWGQLVRAGQPATAFSQQDLLDGAVLYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GQGTIDTAVLHLDTNLDIRSGDEVHYHVTAGPRWGQLVRAGQPATAFSQQDLLDGAVLYS 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 pF1KB9 HNGSLSPRDTMAFSVEAGPVHTDATLQVTIALEGPLAPLKLVRHKKIYVFQGEAAEIRRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 HNGSLSPRDTMAFSVEAGPVHTDATLQVTIALEGPLAPLKLVRHKKIYVFQGEAAEIRRD 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 pF1KB9 QLEAAQEAVPPADIVFSVKSPPSAGYLVMVSRGALADEPPSLDPVQSFSQEAVDTGRVLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 QLEAAQEAVPPADIVFSVKSPPSAGYLVMVSRGALADEPPSLDPVQSFSQEAVDTGRVLY 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 pF1KB9 LHSRPEAWSDAFSLDVASGLGAPLEGVLVELEVLPAAIPLEAQNFSVPEGGSLTLAPPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LHSRPEAWSDAFSLDVASGLGAPLEGVLVELEVLPAAIPLEAQNFSVPEGGSLTLAPPLL 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 pF1KB9 RVSGPYFPTLLGLSLQVLEPPQHGALQKEDGPQARTLSAFSWRMVEEQLIRYVHDGSETL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RVSGPYFPTLLGLSLQVLEPPQHGALQKEDGPQARTLSAFSWRMVEEQLIRYVHDGSETL 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 pF1KB9 TDSFVLMANASEMDRQSHPVAFTVTVLPVNDQPPILTTNTGLQMWEGATAPIPAEALRST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 TDSFVLMANASEMDRQSHPVAFTVTVLPVNDQPPILTTNTGLQMWEGATAPIPAEALRST 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 pF1KB9 DGDSGSEDLVYTIEQPSNGRVVLRGAPGTEVRSFTQAQLDGGLVLFSHRGTLDGGFRFRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 DGDSGSEDLVYTIEQPSNGRVVLRGAPGTEVRSFTQAQLDGGLVLFSHRGTLDGGFRFRL 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 pF1KB9 SDGEHTSPGHFFRVTAQKQVLLSLKGSQTLTVCPGSVQPLSSQTLRASSSAGTDPQLLLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 SDGEHTSPGHFFRVTAQKQVLLSLKGSQTLTVCPGSVQPLSSQTLRASSSAGTDPQLLLY 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 pF1KB9 RVVRGPQLGRLFHAQQDSTGEALVNFTQAEVYAGNILYEHEMPPEPFWEAHDTLELQLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RVVRGPQLGRLFHAQQDSTGEALVNFTQAEVYAGNILYEHEMPPEPFWEAHDTLELQLSS 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 pF1KB9 PPARDVAATLAVAVSFEAACPQRPSHLWKNKGLWVPEGQRARITVAALDASNLLASVPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PPARDVAATLAVAVSFEAACPQRPSHLWKNKGLWVPEGQRARITVAALDASNLLASVPSP 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 pF1KB9 QRSEHDVLFQVTQFPSRGQLLVSEEPLHAGQPHFLQSQLAAGQLVYAHGGGGTQQDGFHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 QRSEHDVLFQVTQFPSRGQLLVSEEPLHAGQPHFLQSQLAAGQLVYAHGGGGTQQDGFHF 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 pF1KB9 RAHLQGPAGASVAGPQTSEAFAITVRDVNERPPQPQASVPLRLTRGSRAPISRAQLSVVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RAHLQGPAGASVAGPQTSEAFAITVRDVNERPPQPQASVPLRLTRGSRAPISRAQLSVVD 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 pF1KB9 PDSAPGEIEYEVQRAPHNGFLSLVGGGLGPVTRFTQADVDSGRLAFVANGSSVAGIFQLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PDSAPGEIEYEVQRAPHNGFLSLVGGGLGPVTRFTQADVDSGRLAFVANGSSVAGIFQLS 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 pF1KB9 MSDGASPPLPMSLAVDILPSAIEVQLRAPLEVPQALGRSSLSQQQLRVVSDREEPEAAYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MSDGASPPLPMSLAVDILPSAIEVQLRAPLEVPQALGRSSLSQQQLRVVSDREEPEAAYR 1930 1940 1950 1960 1970 1980 1990 2000 2010 2020 2030 2040 pF1KB9 LIQGPQYGHLLVGGRPTSAFSQFQIDQGEVVFAFTNFSSSHDHFRVLALARGVNASAVVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LIQGPQYGHLLVGGRPTSAFSQFQIDQGEVVFAFTNFSSSHDHFRVLALARGVNASAVVN 1990 2000 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100 pF1KB9 VTVRALLHVWAGGPWPQGATLRLDPTVLDAGELANRTGSVPRFRLLEGPRHGRVVRVPRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VTVRALLHVWAGGPWPQGATLRLDPTVLDAGELANRTGSVPRFRLLEGPRHGRVVRVPRA 2050 2060 2070 2080 2090 2100 2110 2120 2130 2140 2150 2160 pF1KB9 RTEPGGSQLVEQFTQQDLEDGRLGLEVGRPEGRAPGPAGDSLTLELWAQGVPPAVASLDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RTEPGGSQLVEQFTQQDLEDGRLGLEVGRPEGRAPGPAGDSLTLELWAQGVPPAVASLDF 2110 2120 2130 2140 2150 2160 2170 2180 2190 2200 2210 2220 pF1KB9 ATEPYNAARPYSVALLSVPEAARTEAGKPESSTPTGEPGPMASSPEPAVAKGGFLSFLEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 ATEPYNAARPYSVALLSVPEAARTEAGKPESSTPTGEPGPMASSPEPAVAKGGFLSFLEA 2170 2180 2190 2200 2210 2220 2230 2240 2250 2260 2270 2280 pF1KB9 NMFSVIIPMCLVLLLLALILPLLFYLRKRNKTGKHDVQVLTAKPRNGLAGDTETFRKVEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 NMFSVIIPMCLVLLLLALILPLLFYLRKRNKTGKHDVQVLTAKPRNGLAGDTETFRKVEP 2230 2240 2250 2260 2270 2280 2290 2300 2310 2320 pF1KB9 GQAIPLTAVPGQGPPPGGQPDPELLQFCRTPNPALKNGQYWV :::::::::::::::::::::::::::::::::::::::::: CCDS10 GQAIPLTAVPGQGPPPGGQPDPELLQFCRTPNPALKNGQYWV 2290 2300 2310 2320 2322 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 17:19:09 2016 done: Fri Nov 4 17:19:10 2016 Total Scan time: 6.540 Total Display time: 0.130 Function used was FASTA [36.3.4 Apr, 2011]