GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:13:36

Sequence gi568815576r:29631228_29848544 : 217317 bp : 50.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5524   5685  162  0  0   74   60   153 0.761  11.27
 1.02 Intr +   7863   7985  123  2  0   78   88    43 0.935   4.08
 1.03 Intr +  10975  11058   84  0  0  114  102    94 0.999  13.42
 1.04 Intr +  23430  23498   69  2  0  115   90    64 0.994   8.68
 1.05 Intr +  24367  24449   83  0  2   87   94    21 0.943   1.04
 1.06 Intr +  26962  27037   76  1  1  137   65   117 0.902  13.82
 1.07 Intr +  29978  30112  135  1  0   38   75   177 0.952  12.16
 1.08 Intr +  33763  33837   75  0  0   86  119    65 0.986   9.11
 1.09 Intr +  37106  37219  114  1  0  105   99   -21 0.715   1.34
 1.10 Intr +  40599  40721  123  2  0  135   20   162 0.999  14.88
 1.11 Intr +  42042  42259  218  2  2   55   78   394 0.998  32.40
 1.12 Intr +  43609  43714  106  1  1  136  105   173 0.998  24.02
 1.13 Intr +  46969  47096  128  0  2   61   53   132 0.974   6.48
 1.14 Intr +  50212  50374  163  1  1   87   75   175 0.972  16.08
 1.15 Intr +  62872  63021  150  0  0   77   49    74 0.291   2.76
 1.16 Term +  63525  63575   51  2  0  122   43    74 0.391   3.73
 1.17 PlyA +  67349  67354    6                               1.05

 2.00 Prom +  68958  68997   40                              -7.56
 2.01 Init +  71662  71736   75  0  0   86   49   102 0.768   7.19
 2.02 Intr +  75799  75932  134  0  2   76   80    77 0.731   5.14
 2.03 Intr +  79105  79312  208  1  1   87   40    82 0.219   2.38
 2.04 Intr +  83562  83743  182  2  2   46   67   115 0.526   3.87
 2.05 Intr +  89098  89359  262  1  1   88   72   296 0.161  25.49
 2.06 Intr +  89425  89904  480  0  0    8  -15   259 0.299   0.83
 2.07 Intr +  91514  91622  109  1  1   62   60    73 0.634   1.76
 2.08 Intr +  96435  96578  144  1  0   79   89   342 0.969  33.65
 2.09 Intr +  97403  97515  113  0  2   94   63   132 0.998  11.40
 2.10 Intr +  97828  97981  154  0  1   40   70   406 0.937  33.65
 2.11 Term +  98215  98342  128  2  2   30   42   314 0.934  19.44
 2.12 PlyA + 100580 100585    6                              -0.45

 3.06 PlyA - 100654 100649    6                              -0.45
 3.05 Term - 102798 102636  163  2  1   82   53    83 0.747   1.61
 3.04 Intr - 107214 107103  112  1  1  123   92    76 0.960  10.94
 3.03 Intr - 109503 109423   81  1  0   90   83   132 0.994  12.51
 3.02 Intr - 111253 111191   63  2  0  111  103    74 0.987   9.89
 3.01 Init - 117317 117191  127  2  1   99   90   335 0.986  35.12
 3.00 Prom - 118591 118552   40                              -4.26

 4.00 Prom + 126488 126527   40                              -2.26
 4.01 Init + 127708 127756   49  0  1   99  103    28 0.973   6.51
 4.02 Intr + 131109 131180   72  1  0   10  105    80 0.470   1.28
 4.03 Term + 131224 131297   74  2  2   53   49    82 0.807  -1.13
 4.04 PlyA + 131506 131511    6                               1.05

 5.00 Prom + 132547 132586   40                              -7.26
 5.01 Init + 136172 136321  150  1  0  101   60   399 0.952  38.44
 5.02 Term + 142276 142431  156  0  0  108   43   114 0.873   6.83
 5.03 PlyA + 143285 143290    6                               1.05

 6.21 PlyA - 143631 143626    6                               1.05
 6.20 Term - 157957 157786  172  0  1   96   53   203 0.920  14.90
 6.19 Intr - 159321 159242   80  0  2  109   84    24 0.933   2.45
 6.18 Intr - 161308 161206  103  0  1   88   77   144 0.878  13.48
 6.17 Intr - 162263 162133  131  2  2  102   94   318 0.977  33.29
 6.16 Intr - 162449 162350  100  1  1   93   80   215 0.925  21.31
 6.15 Intr - 169883 169764  120  1  0   98  105   185 0.999  20.81
 6.14 Intr - 170981 170767  215  2  2   75   75   380 0.999  32.91
 6.13 Intr - 173603 173411  193  1  1  -12   87   215 0.166  10.89
 6.12 Intr - 175326 175258   69  2  0   98  105   121 0.999  13.10
 6.11 Intr - 175677 175570  108  2  0  102  115    56 0.969   9.10
 6.10 Intr - 176958 176884   75  2  0   65   61    68 0.572   0.43
 6.09 Intr - 182315 182203  113  2  2   46  110    50 0.957   2.18
 6.08 Intr - 183540 183430  111  0  0   77   95    42 0.946   4.38
 6.07 Intr - 184846 184779   68  2  2  125   81    49 0.999   6.52
 6.06 Intr - 191237 191108  130  2  1   84   75   151 0.992  13.67
 6.05 Intr - 194030 193860  171  2  0   99   80   234 0.999  23.84
 6.04 Intr - 194553 194395  159  0  0   52   92   155 0.910  12.48
 6.03 Intr - 196961 196891   71  0  2   38   48    21 0.084  -8.00
 6.02 Intr - 201115 201018   98  0  2  101   93   121 0.615  13.55
 6.01 Intr - 207045 206951   95  0  2   28  105   180 0.542  12.46

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 173572 173411  162  1  0   53   87   184 0.813  14.97
S.002 Term - 175063 174943  121  0  1  103   42   157 0.905  10.55


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:29631228_29848544|GENSCAN_predicted_peptide_1|619_aa
MKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVGLELDETGGADVLDHDV
SKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAV
QAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEME
YLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISY
SDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRKADSLEVQQMKAQAR
EEKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANEALMRSEETADLLAE
KAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESER
RAKEADQLKQDLQEAREAERRAKQKLLEIATKPTYPPMNPIPAPLPPDIPSFNLIGDSLS
FDFKDTDMKRLSMEIEKEKVEYMEKSKHLQEQLNELKTEIEALKLKERETALDILHNENS
DRGGSSKHNTIKKSATCVHQPSLPAQATLRKPLPPAHGEKHLLSCHVMSKFASGPPGKPG
VEGLTLQSAKSRVAFFEEL

>gi568815576r:29631228_29848544|GENSCAN_predicted_CDS_1|1860_bp
atgaagtggaaagggaaggacctctttgatttggtgtgccggactctggggctccgagaa
acctggttctttggactgcagtacacaatcaaggacacagtggcctggctcaaaatggac
aagaaggttgggctagaactcgatgaaactggtggggctgacgtactggatcatgatgtt
tcaaaggaagaaccagtcacctttcacttcttggccaaattttatcctgagaatgctgaa
gaggagctggttcaggagatcacacaacatttattcttcttacaggtaaagaagcagatt
ttagatgaaaagatctactgccctcctgaggcttctgtgctcctggcttcttacgccgtc
caggccaagtatggtgactacgaccccagtgttcacaagcggggatttttggcccaagag
gaattgcttccaaaaagggtaataaatctgtatcagatgactccggaaatgtgggaggag
agaattactgcttggtacgcagagcaccgaggccgagccagggatgaagctgaaatggaa
tatctgaagatagctcaggacctggagatgtacggtgtgaactactttgcaatccggaat
aaaaagggcacagagctgctgcttggagtggatgccctggggcttcacatttatgaccct
gagaacagactgacccccaagatctccttcccgtggaatgaaatccgaaacatctcgtac
agtgacaaggagtttactattaaaccactggataagaaaattgatgtcttcaagtttaac
tcctcaaagcttcgtgttaataagctgattctccagctatgtatcgggaaccatgatcta
tttatgaggagaaggaaagccgattctttggaagttcagcagatgaaagcccaggccagg
gaggagaaggctagaaagcagatggagcggcagcgcctcgctcgagagaagcagatgagg
gaggaggctgaacgcacgagggatgagttggagaggaggctgctgcagatgaaagaagaa
gcaacaatggccaacgaagcactgatgcggtctgaggagacagctgacctgttggctgaa
aaggcccagatcaccgaggaggaggcaaaacttctggcccagaaggccgcagaggctgag
caggaaatgcagcgcatcaaggccacagcgattcgcacggaggaggagaagcgcctgatg
gagcagaaggtgctggaagccgaggtgctggcactgaagatggctgaggagtcagagagg
agggccaaagaggcagatcagctgaagcaggacctgcaggaagcacgcgaggcggagcga
agagccaagcagaagctcctggagattgccaccaagcccacgtacccgcccatgaaccca
attccagcaccgttgcctcctgacataccaagcttcaacctcattggtgacagcctgtct
ttcgacttcaaagatactgacatgaagcggctttccatggagatagagaaagaaaaagtg
gaatacatggaaaagagcaagcatctgcaggagcagctcaatgaactcaagacagaaatc
gaggccttgaaactgaaagagagggagacagctctggatattctgcacaatgagaactcc
gacaggggtggcagcagcaagcacaataccattaaaaagagtgccacctgtgtgcaccag
ccctccctgcctgcacaagccacactgagaaagccgttgcctccagctcatggagagaaa
caccttctcagctgccacgtcatgagcaagtttgcttcgggaccacctgggaaaccagga
gtagaagggctcaccttgcagagcgccaagtcccgagtggccttctttgaagagctctag

>gi568815576r:29631228_29848544|GENSCAN_predicted_peptide_2|662_aa
MGVTGPGYRRSGYGYSHGREPEWNQPFSRPQFPLCTSEQQFSKGSTPRSRLAPSQHRRDS
MMDEDPAGGSWQGHTVRPPSVLVSLDADRAHGSVWRILTWPQQLHQHPQPSSLCPALSCL
SFPTCWVAEAAATRYHVPMGVPGKATKLTWQHLDILMTPLSRGGNQSGDGVSTKFKVILG
LLITALPEPRVLLGEKEEGSRAPRPLQPPPGPPPAHEPRPQSLRRAGGRGASKMPFHPVT
AALMYRGIYTVPNLLSEQRPVDIPEDELEGECPPGSPPRRPSYLCAQVGAPASSCAPRQD
LSAPRGAAVGVAQAESGPAPARVVPSAAETCRAPQRGHGAAQSAVTVRQRGGLGRGSALS
PQRRPGRSTRILIPSAAPARGSLLALTFRSCRFKNSICSGSSRRGEGDCPALARCGAAPV
PTCGRSPFPAALRGPPARRAGKAAREAGGLGETQALCREDAIRGGATCARKRELGSPGWN
AADKIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEE
FVTLLGPKLSTSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENI
IMTEEESHLGTAEECPVDVETCSNQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSG
MK

>gi568815576r:29631228_29848544|GENSCAN_predicted_CDS_2|1989_bp
atgggagtgactggcccaggataccgcaggagtggctatggctacagccatggccgggag
ccggagtggaaccagcccttctccaggcctcagtttcccttgtgcaccagcgagcagcag
ttttctaaaggttccaccccgaggagccggctggcccccagccagcatcgcagggacagc
atgatggatgaggatcccgcggggggcagctggcaaggacacaccgtccgtccgcccagt
gtcctggtctccttggacgcagacagagcccacggaagcgtctggcgcatcctgacttgg
ccgcagcagctgcaccagcacccccagccctcttccctgtgcccagcgctgtcctgcctg
tccttccccacctgctgggtggccgaagcagccgccacacgctaccatgtccccatgggt
gtgccgggcaaggccacaaagctgacctggcagcacctggatattttaatgaccccattg
tccagaggaggaaatcaaagtggagacggtgtaagcaccaagttcaaggtcatcctggga
ctgttgatcacagccctacctgagccgcgggtcctgctgggagagaaggaggaggggagc
cgcgcgccccgcccgctccagccgcccccggggccgccaccggcccatgagccccggcct
caaagtttgcggcgggcgggcgggcgcggagcctccaagatgccgttccacccggtgacg
gcggcgttgatgtaccggggcatctacaccgtgcccaacctgctgtcggagcagcgcccg
gtggacatcccggaggacgagctggagggtgagtgtccgccgggatccccgccccggcgg
ccctcctacctgtgcgcccaggtgggcgccccagctagcagctgtgccccgcggcaagac
ctgtccgcaccccggggcgccgcggtgggggtcgctcaggcggagagcggcccagcccct
gcccgcgtggtccccagcgctgcggaaacttgccgggccccgcagcggggtcacggggcc
gcgcagtcggcggtgacggtgcggcaacgcggcggactggggcgggggtccgcgctgagc
ccccagcgccggcccggccggagcacccgcatcctgatcccctccgcggcgcccgcccgc
ggctctctgctcgcattgacattccgctcgtgtcgctttaaaaattcaatctgctcgggc
agcagcagaaggggagagggcgactgccctgctcttgcccgctgcggggccgcccccgtc
cccacctgcggccgtagccccttccctgcagccctgcggggacccccagcccggcgcgcc
gggaaggcggcccgggaggcgggcggtctgggcgagacccaggccctctgccgggaggac
gccattcgcggaggagccacatgtgccaggaagagggagctgggcagcccgggatggaat
gctgcagacaagatccgagaggccttcaaggtgtttgaccgtgacggcaatggcttcatc
tccaagcaggagctgggcacagccatgcgctcactgggttacatgcccaacgaggtggag
ctggaggtcatcatccagcggctggacatggatggtgatggtcaagtggactttgaggag
tttgtgacccttctgggacccaaactctccacctcagggatcccagagaagttccatggc
accgactttgatactgtcttctggaagtgcgacatgcagaagctgacggtggatgagctg
aagcggctgctctacgacaccttctgcgagcacctgtccatgaaggacatagagaacatc
atcatgacggaggaggagagccacctgggcacagccgaggagtgtcccgtggatgtggag
acctgctccaaccagcagatccgccagacttgcgtgcgcaagagtctcatctgcgccttc
gccatcgccttcatcatcagtgtcatgctcattgcggccaaccaggtgctgcgcagtggc
atgaagtag

>gi568815576r:29631228_29848544|GENSCAN_predicted_peptide_3|181_aa
MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF
LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR
LSSAPSSRTAAGKMQESGSCPHAQDKQVTREATSRVVPDTHLNVPKALAHVSGALAVCQC
V

>gi568815576r:29631228_29848544|GENSCAN_predicted_CDS_3|546_bp
atggggaagcgatacttctgtgactactgcgaccgctccttccaggacaacctccacaac
cgcaagaagcacctgaacgggctgcagcacctcaaggccaagaaggtctggtacgacatg
ttccgagatgcagctgccatcttgctggatgagcagaacaagcggccctgcaggaagttt
ctactgacaggccagtgcgactttggctccaactgcagattttcccacatgtcagagcga
gacctgcaggagctgagcatccaggtggaggaggagaggcgagccagggagtggctacta
gatgctcctgagctccccgagggccatctggaggactggctggagaagagagccaagcgg
ctgagctcagccccaagtagcaggaccgcggctgggaaaatgcaagagagtggctcctgt
cctcacgcacaggacaaacaggtcaccagagaagctacgagcagagttgtgccagacacg
cacctcaatgtccccaaggctttggctcacgtgtctggggccctggcagtgtgccagtgt
gtgtga

>gi568815576r:29631228_29848544|GENSCAN_predicted_peptide_4|64_aa
MEGSRDLVHSDEPARGGDPNPQAPERYGSMACQELGRTAGATPHCSHYRLSFVSCQIIGS
IRFS

>gi568815576r:29631228_29848544|GENSCAN_predicted_CDS_4|195_bp
atggagggttccagagacctggttcactcggatgaaccagccaggggtggggaccccaac
ccccaggccccggaacggtacgggtccatggcctgtcaggagctgggccgcacagcagga
gccactccccattgctcgcattaccgcctgagcttcgtctcctgtcagatcatcggcagc
attagattctcatag

>gi568815576r:29631228_29848544|GENSCAN_predicted_peptide_5|101_aa
MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGPDVIQPELDY
PESSLMEEDSGQETHGEVGETLEIVQFFLPEVYLCEDEVEA

>gi568815576r:29631228_29848544|GENSCAN_predicted_CDS_5|306_bp
atggcggccgcgacgttgacttcgaaattgtactccctgctgttccgcaggacctccacc
ttcgccctcaccatcatcgtgggcgtcatgttcttcgagcgcgccttcgatcaaggcgcg
gacgctatctacgaccacatcaacgaggggcctgatgtgattcagccagagctggattat
ccagaatcttctctgatggaggaagattcaggtcaggaaacccatggagaggtaggagag
accctagaaattgtccagtttttcctacctgaggtgtatctttgtgaagacgaagttgaa
gcctag

>gi568815576r:29631228_29848544|GENSCAN_predicted_peptide_6|793_aa
FDPGSAGAQGAVTVVGGGGGGGGTEPVVEPPRRVTQHNASSAPGPTPDHPQGPEDRKAED
FTSAVLILECLEPWRKSACSGKPSLILQHPEQKADRYFVLYKPPPKDNIPALVEEYLERA
TFVANDLDWLLALPHDKFWCQVIFDETLQKCLDSYLRYVPRKFDEGVASAPEVVDMQKRL
HRSVFLTFLRMSTHKESKDHFISPSAFGEILYNNFLFDIPKILDLCVLFGKGNSPLLQKM
IGNIFTQQPSYYSDLDETLPTILQVFSNILQHCGLQGDGANTTPQKLEERGRLTPSDMPL
LELKDIVLYLCDTCTTLWAFLDIFPLACQTFQKHDFCYRLASFYEAAIPEMESAIKKRRL
EDSKLLGDLWQRLSHSRKKLMEIFHIILNQICLLPILESSCDNIQGFIEEFLQIFSSLLQ
EKRDETRTAYILQAVESAWEGVDRRKATDAKDPSVIEEPNGEPNGVTVTAEAVSQASSHP
ENSEEEECMGAAAAVGPAMCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINN
ILEERLAPTLSQLDRNLDREMKPDPTPLLTSRHNVFQNDEFDVFSRDSVDLSRVHKGKST
RKEENTRSLLNDKRAVAAQRQRYEQYSVVVEEVPLQPGESLPYHSVYYEDEYDDTYDGNQ
VGANDADSDDELISRRPFTIPQVLRTKVPREGQEEDDDDEEDDADEEAPKPDHFVQDPAV
LREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQSRETTQERRKKEANKATRANHNRRT
MADRKRSKGMIPS

>gi568815576r:29631228_29848544|GENSCAN_predicted_CDS_6|2382_bp
tttgaccccggaagtgcgggcgctcagggagctgtcaccgtggtcggcggcggcggcggc
ggcggcggcacagagccggtggtggagccgccgaggagggtcacgcagcacaatgccagc
tctgcccctggaccaactccagatcacccacaaggacccgaagacaggaaagctgaggac
ttcaccagcgctgtccttatcctcgaatgcttggagccttggaggaagtctgcttgctct
gggaagccgtcccttatcctccagcaccccgagcagaaggcagaccggtattttgtgtta
tacaaaccgccccctaaagacaacattcccgccctagtggaggagtacctggaacgcgcc
accttcgtagccaatgacctcgactggctcctggccttgcctcacgataaattctggtgc
caggtgatctttgacgagactctacagaagtgcctggactcctacctgcgctatgtcccc
cgcaaattcgacgagggggtggcctcagcccctgaggttgttgacatgcagaagcgcctc
catcgaagtgtttttctcaccttcctccgcatgtccactcacaaggaatccaaagatcac
ttcatttccccttctgcgtttggagaaatcctctacaataacttcctctttgacattcca
aagatcctggacctctgcgtgctctttggaaaaggcaactcaccactgctccagaagatg
ataggaaacatctttacacagcagccaagttactacagtgacctggatgaaaccctgcct
accatccttcaggtcttcagcaatatcctccagcactgtggtttgcaaggggacggggcc
aataccacaccccagaagcttgaggagaggggccgattgacccccagtgacatgcctctc
ctggaattaaaggacattgttctctacctttgtgatacctgcaccacactttgggccttt
ctggatatcttccctttggcttgccagaccttccagaagcacgacttttgttacagacta
gcttccttctacgaagcagcaattcccgaaatggagtctgcaattaagaagaggaggctt
gaagatagcaagcttcttggtgacctgtggcagaggctctcccattccaggaagaagcta
atggagattttccacatcatcctgaaccagatctgcctccttcccatcctagaaagcagc
tgtgacaacattcagggcttcatcgaagagttccttcagatcttcagctccttgctgcag
gagaagagggacgagacgcggactgcctacatcctccaggcagtcgagagtgcatgggaa
ggggtggacagacggaaagccacagatgctaaagacccatcggtgattgaggagcctaat
ggggagcctaacggggtcacggtgacagcagaggcagtcagtcaagcatcatcacatccg
gagaactcggaggaagaggagtgcatgggagcagccgcggctgtgggccctgccatgtgt
ggggtggaactggactctctcatctcccaagtgaaggacctgctgccagaccttggtgag
ggcttcatcctggcctgcctggagtactaccactacgacccagagcaggtgatcaacaat
atcctggaggagcggctggcccccaccctcagccagctggaccgcaacctagacagagaa
atgaaaccagaccctacacccctgctgacgtctcgccacaacgtcttccagaatgacgag
tttgatgtgttcagcagggactcagtagacctgagccgggtgcacaagggcaagagcacc
aggaaggaggaaaacacgcggagtttgctgaacgacaagcgtgcagtggcggcacagcgg
cagcgctacgagcagtacagcgtggtggtggaggaggtgccactgcagccaggcgagagc
ctgccctaccacagtgtctactacgaggatgagtacgatgacacatacgatggcaaccag
gtgggcgccaatgatgcagactctgatgacgagctcatcagccgcaggccattcaccatc
cctcaggtgctgagaaccaaagtgcctagagaagggcaggaggaggatgacgacgatgag
gaagacgatgctgacgaggaggctcccaagcccgaccattttgttcaggaccctgcagtg
ctgagagagaaggcagaagccaggcgcatggcctttctcgccaagaaagggtaccggcat
gacagctcaacagcagtggccggcagcccccgaggccatgggcagagccgcgagacaacc
caggaacgcaggaagaaggaagccaacaaggcgacaagagccaaccacaaccggagaacc
atggccgaccgcaagaggagcaaaggcatgatcccatcctga