FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9553, 261 aa 1>>>pF1KB9553 261 - 261 aa - 261 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7195+/-0.000338; mu= 6.0336+/- 0.021 mean_var=187.9332+/-36.639, 0's: 0 Z-trim(122.2): 18 B-trim: 331 in 1/55 Lambda= 0.093556 statistics sampled from 39930 (39960) to 39930 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.469), width: 16 Scan time: 7.920 The best scores are: opt bits E(85289) NP_005071 (OMIM: 194355,612371) X-box-binding prot ( 261) 1732 245.1 9.3e-65 NP_001073007 (OMIM: 194355,612371) X-box-binding p ( 376) 1040 151.9 1.6e-36 >>NP_005071 (OMIM: 194355,612371) X-box-binding protein (261 aa) initn: 1732 init1: 1732 opt: 1732 Z-score: 1283.6 bits: 245.1 E(85289): 9.3e-65 Smith-Waterman score: 1732; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261) 10 20 30 40 50 60 pF1KB9 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 SPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVP 190 200 210 220 230 240 250 260 pF1KB9 YQPPFLCQWGRHQPSWKPLMN ::::::::::::::::::::: NP_005 YQPPFLCQWGRHQPSWKPLMN 250 260 >>NP_001073007 (OMIM: 194355,612371) X-box-binding prote (376 aa) initn: 1040 init1: 1040 opt: 1040 Z-score: 776.8 bits: 151.9 E(85289): 1.6e-36 Smith-Waterman score: 1040; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166) 10 20 30 40 50 60 pF1KB9 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQL :::::::::::::::::::::::::::::::::::::::::::::: NP_001 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAAGAGPVVTPPEHLPM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 SPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVP NP_001 DSGGIDSSDSESDILLGILDNLDPVMFFKCPSPEPASLEELPEVYPEGPSSLPASLSLSV 190 200 210 220 230 240 261 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 17:12:37 2016 done: Fri Nov 4 17:12:38 2016 Total Scan time: 7.920 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]