FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9551, 385 aa 1>>>pF1KB9551 385 - 385 aa - 385 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4401+/-0.000904; mu= 16.1874+/- 0.054 mean_var=67.4823+/-13.351, 0's: 0 Z-trim(104.4): 32 B-trim: 0 in 0/52 Lambda= 0.156127 statistics sampled from 7888 (7896) to 7888 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.243), width: 16 Scan time: 2.730 The best scores are: opt bits E(32554) CCDS13817.1 SMARCB1 gene_id:6598|Hs108|chr22 ( 385) 2573 588.7 3e-168 CCDS46671.1 SMARCB1 gene_id:6598|Hs108|chr22 ( 376) 2083 478.3 4.9e-135 CCDS82699.1 SMARCB1 gene_id:6598|Hs108|chr22 ( 394) 1467 339.6 3e-93 >>CCDS13817.1 SMARCB1 gene_id:6598|Hs108|chr22 (385 aa) initn: 2573 init1: 2573 opt: 2573 Z-score: 3134.1 bits: 588.7 E(32554): 3e-168 Smith-Waterman score: 2573; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385) 10 20 30 40 50 60 pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE 310 320 330 340 350 360 370 380 pF1KB9 MEKKIRDQDRNTRRMRRLANTAPAW ::::::::::::::::::::::::: CCDS13 MEKKIRDQDRNTRRMRRLANTAPAW 370 380 >>CCDS46671.1 SMARCB1 gene_id:6598|Hs108|chr22 (376 aa) initn: 2073 init1: 2073 opt: 2083 Z-score: 2537.8 bits: 478.3 E(32554): 4.9e-135 Smith-Waterman score: 2486; 97.7% identity (97.7% similar) in 385 aa overlap (1-385:1-376) 10 20 30 40 50 60 pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL :::::::: ::::::::::::::::::::::::::::::::::::::::::: CCDS46 KKIVASSH---------DHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL 70 80 90 100 110 130 140 150 160 170 180 pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB9 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB9 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB9 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE 300 310 320 330 340 350 370 380 pF1KB9 MEKKIRDQDRNTRRMRRLANTAPAW ::::::::::::::::::::::::: CCDS46 MEKKIRDQDRNTRRMRRLANTAPAW 360 370 >>CCDS82699.1 SMARCB1 gene_id:6598|Hs108|chr22 (394 aa) initn: 1904 init1: 1467 opt: 1467 Z-score: 1787.6 bits: 339.6 E(32554): 3e-93 Smith-Waterman score: 2430; 93.3% identity (93.3% similar) in 403 aa overlap (1-385:1-394) 10 20 30 40 50 60 pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL :::::::: ::::::::::::::::::::::::::::::::::::::::::: CCDS82 KKIVASSH---------DHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL 70 80 90 100 110 130 140 150 160 pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPL-C------------ :::::::::::::::::::::::::::::::::::::::::::::: : CCDS82 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLWCGCIAALTLRADS 120 130 140 150 160 170 170 180 190 200 210 220 pF1KB9 -----FDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEIL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ALVLHFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEIL 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB9 CDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 CDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWD 240 250 260 270 280 290 290 300 310 320 330 340 pF1KB9 MSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRN 300 310 320 330 340 350 350 360 370 380 pF1KB9 TGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW ::::::::::::::::::::::::::::::::::::::::::: CCDS82 TGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW 360 370 380 390 385 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 17:12:01 2016 done: Fri Nov 4 17:12:01 2016 Total Scan time: 2.730 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]