GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:07:46

Sequence gi568815576r:28958745_29160844 : 202100 bp : 45.67% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5927   5982   56  0  2   63   98    71 0.275   4.30
 1.02 Intr +  28332  28457  126  2  0   91  121    54 0.667   9.88
 1.03 Intr +  48312  48420  109  2  1   41   90    10 0.001  -3.64
 1.04 Intr +  67102  67209  108  2  0   50   42    85 0.241   0.36
 1.05 Intr +  71172  71319  148  1  1   45   95    92 0.672   4.89
 1.06 Intr +  72636  72723   88  0  1   78   73    33 0.490   0.77
 1.07 Intr +  74888  74950   63  1  0   44   99    76 0.457   3.21
 1.08 Intr +  77764  77860   97  0  1  101   71   -12 0.045  -2.02
 1.09 Intr +  83676  83704   29  1  2   58  116    44 0.896   2.03
 1.10 Intr +  83751  83825   75  2  0   75  115    73 0.995   8.41
 1.11 Intr +  84555  84686  132  2  0   99   46   223 0.997  20.04
 1.12 Intr +  86036  86146  111  1  0  116   72   108 0.998  12.58
 1.13 Intr +  87972  88139  168  2  0   84   80   168 0.937  15.74
 1.14 Intr +  89645  89747  103  1  1   83   61   112 0.999   7.75
 1.15 Intr +  90453  92204 1752  1  0  115   94  1673 0.950 157.92
 1.16 Intr +  94411  94505   95  2  2  119   83   -42 0.868  -1.92
 1.17 Term +  94835  94933   99  1  0  151   38    73 0.933   6.73
 1.18 PlyA +  94994  94999    6                               1.05

 2.03 PlyA -  96311  96306    6                               1.05
 2.02 Term - 100438  99998  441  1  0   83   49   299 0.984  20.76
 2.01 Init - 100977 100939   39  0  0   80   91    57 0.295   5.43
 2.00 Prom - 103326 103287   40                              -6.06

 3.00 Prom + 103534 103573   40                              -6.06
 3.01 Init + 114387 114483   97  2  1   76  117   220 0.754  22.17
 3.02 Term + 114613 115430  818  2  2  108   44   312 0.742  22.10
 3.03 PlyA + 116171 116176    6                               1.05

 4.03 PlyA - 116716 116711    6                               1.05
 4.02 Term - 122093 121937  157  1  1   65   41   172 0.633   7.61
 4.01 Init - 141437 141424   14  2  2  112   73    23 0.002   1.41
 4.00 Prom - 141673 141634   40                              -3.56

 5.00 Prom + 141771 141810   40                              -3.46
 5.01 Init + 152045 152097   53  1  2   89   47    54 0.017   2.03
 5.02 Intr + 161095 161171   77  1  2   36   94    62 0.012   0.76
 5.03 Intr + 162613 162737  125  2  2   94   59    42 0.627   2.20
 5.04 Intr + 166519 166672  154  0  1   71   73   131 0.690   9.55
 5.05 Intr + 178598 178930  333  0  0  108  116   367 0.997  37.04
 5.06 Intr + 179880 180038  159  1  0  103   69   229 0.969  22.46
 5.07 Intr + 181538 181622   85  0  1   93   89    79 0.777   7.38
 5.08 Intr + 189267 189385  119  0  2   55   22    85 0.355  -1.29
 5.09 Term + 192048 192223  176  1  2   40   49   171 0.389   6.32
 5.10 PlyA + 194153 194158    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 133344 133452  109  2  1   55   25   110 0.837   1.78
S.002 Intr + 135514 135676  163  2  1  102  110    55 0.987   8.13


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:28958745_29160844|GENSCAN_predicted_peptide_1|1119_aa
XSDEDELLYSSPLRIELQKMHPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTVLG
KYPRRELLSDDHFAANAGRRGQNDLNNVCGHAAGLGRVDCKPLTAFQPERGIDGIVNTGQ
KVVLMIIVTPRMRVAICIEGEWSFLKFLVADYIRFGLKWDFWKLNQDNDFQVLPKAYLPG
IGRIFSPVTRVLLVCDLISYGMKSFCRKTGPLGGSSGDEKTMDGFGSQNQQNLLINRPPN
PEIKSVDKFACIVCASLSILSFMQPSLIAKANFEKAKRAVQRGATAVIFDVSENPEAIDQ
LNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQHRPPRQPTEYFDMGIFLAFFV
VVSLVCLILLVKIKLKQRRSQNSMNRLAVQALEKMETRKFNSKSKGRREGSCGALDTLSS
SSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGNPSAV
CVETSNLSRGRQQRVTLPVHYPGRVHRTNAIPAYPTRTSMDSHGNPVTLLTMDRHGEQSL
YSPQTPAYIRSYPPLHLDHSLAAHRCGLEHRAYSPAHPFRRPKLSGRSFSKAACFSQYET
MYQHYYFQGLSYPEQEGQSPPSLAPRGPARAFPPSGSGSLLFPTVVHVAPPSHLESGSTS
SFSCYHGHRSVCSGYLADCPGSDSSSSSSSGQCHCSSSDSVVDCTEVSNQGVYGSCSTFR
SSLSSDYDPFIYRSRSPCRASEAGGSGSSGRGPALCFEGSPPPEELPAVHSHGAGRGEPW
PGPASPSGDQVSTCSLEMNYSSNSSLEHRGPNSSTSEVGLEASPGAAPDLRRTWKGGHEL
PSCACCCEPQPSPAGPSAGAAGSSTLFLGPHLYEGSGPAGGEPQSGSSQGLYGLHPDHLP
RTDGVKYEGLPCCFYEEKQVARGGGGGSGCYTEDYSVSVQYTLTEEPPPGCYPGARDLSQ
RIPIIPEDVDCDLGLPSDCQGTHSLGSWGGTRGPDTPRPHRGLGATREEERALCCQARAL
LRPGCPPEEAGAVRANFPSALQDTQESSTTATEAADLRLGNTPAPSEITYTPSVHFCHPI
AKLLCLKDRDLTQQTAAAREPELRRNSYLEIGNCMETPN

>gi568815576r:28958745_29160844|GENSCAN_predicted_CDS_1|3360_bp
ngttctgatgaggatgaacttctgtactccagccccctcagaatagagctgcagaagatg
cacccactgggcctatgtaataacaatgacgaagaggacttgtatgaatatggctgggta
ggagtggtgaagctggaacagccagaattggacccgaaaccatgcctcactgtcctaggc
aagtatccccggagagaattgttatcagatgatcattttgctgctaatgcagggaggagg
ggacagaacgacttgaataacgtgtgtggtcatgcagctggtctgggcagagtggattgc
aagcccctcactgctttccagcccgaaaggggcattgatgggattgtgaacacaggacag
aaagtagtattaatgattattgttacaccccggatgcgtgttgccatatgcattgaaggg
gagtggtcctttttgaagtttctagttgctgactatataagatttggcctgaagtgggac
ttctggaaactcaaccaagataacgacttccaggttcttccaaaagcttatcttccaggc
ataggcaggattttctcaccggttacccgtgtgctcttggtgtgtgacctcatttcctat
ggaatgaaaagtttctgtcggaaaacagggcccttgggtggcagcagtggggatgaaaaa
acgatggatggatttggaagtcagaatcagcaaaatttgctcatcaacagaccgcctaac
ccagaaattaaatctgttgacaaatttgcctgtattgtctgtgccagtctatctatcttg
tcatttatgcagccaagcctgattgccaaggccaactttgaaaaggccaagcgagcagta
cagcggggagctactgcagtcatctttgatgtgtctgaaaacccagaagctattgatcag
ctgaaccagggctctgaagacccgctcaagaggccggtggtgtatgtgaagggtgcagat
gccattaagctgatgaacatcgtcaacaagcagaaagtggctcgagcaaggatccagcac
cgccctcctcgacaacccactgaatactttgacatggggattttcctggctttcttcgtc
gtggtctccttggtctgcctcatcctccttgtcaaaatcaagctgaagcagcgacgcagt
cagaattccatgaacaggctggctgtgcaggctctagagaagatggaaaccagaaagttc
aactccaagagcaaggggcgccgggaggggagctgtggggccctggacacactcagcagc
agctccacgtccgactgtgccatctgtctggagaagtacattgatggagaggagctgcgg
gtcatcccctgtactcaccggtttcacaggaagtgcgtggacccctggctgctgcagcac
cacacctgcccccactgtcggcacaacatcatagaacaaaagggaaacccaagcgcggtg
tgtgtggagaccagcaacctctcacgtggtcggcagcagagggtgaccctgccggtgcat
taccccggccgcgtgcacaggaccaacgccatcccagcctaccctacgaggacaagcatg
gactcccacggcaaccccgtcaccttgctgaccatggaccggcacggggagcagagcctc
tattccccgcagacccccgcctacatccgcagctacccacccctccacctggaccacagc
ctggccgctcaccgctgcggcctggagcaccgggcctactccccagcccaccccttccgc
aggcccaagttgagtggccgcagcttctccaaggcagcttgcttctcccagtatgagacc
atgtaccagcactactacttccagggcctcagctacccggagcaggaggggcagtcccca
cctagcctcgcaccccggggcccggcccgtgcctttcctccgagcggcagtggcagcctg
ctcttccccaccgtggtgcacgtggccccgccctcccacctggagagcggcagcacgtcc
agcttcagctgctatcacggccaccgctcggtgtgcagtggctacctggccgactgccca
ggcagcgacagcagcagcagcagcagctccggccagtgccactgttcctccagtgactct
gtggtagactgcactgaggtcagcaaccagggcgtgtacgggagctgctccaccttccgc
agctccctcagcagcgactatgaccccttcatctaccgcagccggagcccctgtcgtgcc
agtgaggcggggggctcgggcagctcgggccggggacctgccctgtgcttcgagggctcc
ccgcctcccgaggagctcccggcggtgcacagtcatggtgctgggcggggcgagccttgg
ccgggccctgcctctccctcgggggatcaggtgtccacctgcagcctggagatgaactac
agcagcaactcctccctggagcacagggggcccaatagctctacctcagaagtggggctc
gaggcttctcctggggccgcccctgacctcaggaggacctggaaggggggccacgagttg
ccgtcgtgtgcctgctgctgcgagccccagccctccccagccgggcctagcgccggagca
gctggcagcagcaccttgttcctggggccccacctctacgagggctctggcccggcgggt
ggggagccccagtcaggaagctcccagggcttgtacggccttcaccccgaccatttgccc
aggacagatggggtgaaatacgagggtctgccctgctgcttctatgaagagaagcaggtg
gcccgcgggggcggagggggcagcggctgctacactgaggactactcggtgagtgtgcag
tacacgctcaccgaggaaccaccgcccggctgctaccccggggcccgggacctgagccag
cgcatccccatcattccagaggatgtggactgtgatctgggcctgccctcggactgccaa
gggacccacagcctcggctcctggggtgggacgcgaggcccggataccccacggccccac
aggggcctgggagcaacccgggaagaggagcgggctctgtgctgccaggctagggcccta
ctgcggcctggctgccctccggaggaggcgggtgctgtcagggccaacttccctagtgcc
ctccaggacactcaggagtccagcaccactgccactgaggctgcagatcttaggttaggt
aacactccagccccctctgagatcacctacacaccttctgttcacttctgtcatcctatt
gctaaattactttgtctcaaggaccgagatctcactcagcagacagcagcagcccgggag
cctgagctcaggaggaactcttacctggaaattgggaactgtatggagactccaaactga

>gi568815576r:28958745_29160844|GENSCAN_predicted_peptide_2|159_aa
MENLAYEGLIGIQSKESSKEKKLTVRQDLEDRYAEHVAATQALPQDSGTAAWKGRVLLPE
TQKRQQLSEDTLTIHGLPTEGYQALYHAVVEPMLWNPSGTPKRYSLELGKAIKQKLWEAL
CSQGAISEGAQRDRFPGRKQPGVHEEPVLKKWPKLKSKK

>gi568815576r:28958745_29160844|GENSCAN_predicted_CDS_2|480_bp
atggagaacttggcctacgaaggcctgattggaatccagagtaaagaaagttcaaaggag
aaaaaactaacagtccgccaagatcttgaggacagatatgctgaacatgtggctgccacc
caagcgctaccccaggacagtgggacagcagcctggaagggccgagtgttgcttcctgaa
acccaaaagagacagcagttgtcggaggacacgctaaccatccatggtctccccacagag
ggttaccaggctctgtaccacgctgtggtggagccaatgctgtggaatccttcagggacc
cccaagaggtacagcctggagctgggcaaggccattaaacaaaagctctgggaggctctt
tgcagtcagggtgccatctctgaaggtgctcagagggaccggttccctggcaggaagcag
ccaggtgtccacgaggagcctgtactcaagaaatggcccaagttaaagagcaaaaaatag

>gi568815576r:28958745_29160844|GENSCAN_predicted_peptide_3|304_aa
MAPPAARLALLSAAALTLAARPAPSPGLGPGPGDAPQAGMVPSWDPGYPQARHRRPRARY
CPPAAGPGAPQRRPSAQEALSALSLPRPSATPPGLGHLLCLGIWDPLPESLSDPNQAGTP
PLPGTSWDPVPSPQRLPPGRDVLCSPVPPRIPSQNPQRLPTGQEAPCSPVPPGIPSPSPQ
RPLPGRDDPCSPVPPGIPPQVLHRRTLHRDDSPATRGYTPLSETSSDIPPLGQGPLPEPH
CDAPASPSPLLPPTPVEPGASPRRAERRREEPALSPFSRVLGCTRLADIITSASRGTGWT
CSPC

>gi568815576r:28958745_29160844|GENSCAN_predicted_CDS_3|915_bp
atggcgccgccagccgcccgcctcgccctgctctccgccgcggcgctcacgctggcggcc
cggcccgcgcctagccccggcctcggccccggacccggcgacgcccctcaggccgggatg
gtcccttcctgggacccgggctacccccaggcccgtcatcgacgcccccgggcccggtac
tgtcccccggctgcaggacccggtgctcctcagcgacgcccctcagcccaggaggccctc
tccgccttgagtcttccaagaccctctgcgacgccccccgggctgggacatcttctctgt
ctcgggatctgggacccgctgcccgagtccctcagcgaccccaaccaggccgggacgccc
cctctccccggtacctcctgggatcccgtcccaagtccccagcgacttcccccgggccgg
gacgtcctctgctccccggtacctcctaggatcccgtcccaaaatccccagcgactcccc
acgggccaggaggccccctgctccccggtacctcctgggatcccgtccccaagtccccag
cgacccctcccgggccgggacgacccctgctccccagtacctcctgggatcccgccccaa
gtccttcatcgacgcaccttgcaccgggacgactcccccgctacaagaggctatacgccc
ctctccgagacctccagcgacatccctcccctgggccaaggtcccctccctgagcctcac
tgcgacgcccccgcgtcccccagtcctctcctcccgcctacaccggtggaacccggcgcc
tccccgcgcagagcagagcggaggcgggaggagccggcgctcagccccttttcccgagtc
ctcggctgcacccgcttggcggacattataacttctgcctcgcgaggaacgggatggact
tgttcgccctgctag

>gi568815576r:28958745_29160844|GENSCAN_predicted_peptide_4|56_aa
MAPLQMFSSSIPGLYRLDASSTSLVVTAKMSPSIAKCPLGAKSPPVEITELEEMVK

>gi568815576r:28958745_29160844|GENSCAN_predicted_CDS_4|171_bp
atggcgccgttgcagatgtttagcagcagcatccctggcctctaccggctagatgccagt
agtacctctttagttgtgacagccaaaatgtctccaagtattgcaaaatgtcccctgggg
gcaaaatctcctccagttgaaatcactgagttagaagaaatggtcaaataa

>gi568815576r:28958745_29160844|GENSCAN_predicted_peptide_5|426_aa
MAAVRFGTEVADEQHRVQICEYVTLDGIGDFADMMKDFVIDYPVPGNLGCYKDHGNPPPL
TGTSKTSNKLTIQTCISFCRSQRFKFAGMESGYACFCGNNPDYWKYGEAASTECNSVCFG
DHTQPCGGDGRIILFDTLVGACGGNYSAMSSVVYSPDFPDTYATGRVCYWTIRVPGASHI
HFSFPLFDIRDSADMVELLDGYTHRVLARFHGRSRPPLSFNVSLDFVILYFFSDRINQAQ
GFAVLYQAVKEELPQERPAVNQTVAEVITEQANLSVSAARSSKVLYVITTSPSHPPQTVP
GWTVYGLATLLILTVTAIVAKILLHVTFKIEVGVKNEEVSGMVLRYLTWVPERREGPLFD
IRNVKGARLRTVYQTLCQVTNRHYRIHLCRNPTRELRVREGVQPGAAKVRTQPGTTGSKA
GGPYSC

>gi568815576r:28958745_29160844|GENSCAN_predicted_CDS_5|1281_bp
atggcagctgtcagatttggaacggaagttgcagatgaacagcacagggtgcaaatctgt
gaatacgttaccttagatggcataggagattttgcagatatgatgaaagattttgtgata
gattatccagtgcctggaaaccttggctgctacaaggatcatggaaacccacctcctcta
actggcaccagtaaaacgtccaacaaactcaccatacaaacttgcatcagtttttgtcgg
agtcagaggttcaagtttgctgggatggagtcaggctatgcttgcttctgtggaaacaat
cctgattactggaagtacggggaggcagccagtaccgaatgcaacagcgtctgcttcggg
gatcacacccaaccctgtggtggcgatggcaggatcatcctctttgatactctcgtgggc
gcctgcggtgggaactactcagccatgtcttctgtggtctattcccctgacttccccgac
acctatgccacggggagggtctgctactggaccatccgggttccgggggcctcccacatc
cacttcagcttccccctatttgacatcagggactcggcggacatggtggagcttctggat
ggctacacccaccgtgtcctagcccgcttccacgggaggagccgcccacctctgtccttc
aacgtctctctggacttcgtcatcttgtatttcttctctgatcgcatcaatcaggcccag
ggatttgctgttttataccaagccgtcaaggaagaactgccacaggagaggcccgctgtc
aaccagacggtggccgaggtgatcacggagcaggccaacctcagtgtcagcgctgcccgg
tcctccaaagtcctctatgtcatcaccaccagccccagccacccacctcagactgtccca
ggatggacagtctatggtctggcaactctcctcatcctcacagtcacagccattgtagca
aagatacttctgcacgtcacattcaaaatagaggtgggggttaagaatgaggaggtgtct
gggatggtgctccggtacctgacatgggtgcctgagcggagagaggggccactcttcgac
ataaggaatgtaaaaggagccaggttacgtactgtgtaccagacgctgtgccaagtgacc
aacagacattaccgaattcatctttgccgcaacccaacaagggaactgagggtcagagaa
ggggtccagccaggggccgccaaggttcggactcagcctgggaccactggctccaaagct
gggggtccttactcctgttga