Result of FASTA (ccds) for pF1KB9434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9434, 216 aa
  1>>>pF1KB9434 216 - 216 aa - 216 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2091+/-0.000782; mu= 13.6939+/- 0.047
 mean_var=56.9596+/-11.247, 0's: 0 Z-trim(106.6): 12  B-trim: 46 in 1/50
 Lambda= 0.169938
 statistics sampled from 9087 (9099) to 9087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.28), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS6520.1 MOB3B gene_id:79817|Hs108|chr9          ( 216) 1511 378.4 1.9e-105
CCDS12081.1 MOB3A gene_id:126308|Hs108|chr19       ( 217) 1249 314.2   4e-86
CCDS540.1 MOB3C gene_id:148932|Hs108|chr1          ( 216) 1169 294.6 3.2e-80
CCDS539.1 MOB3C gene_id:148932|Hs108|chr1          ( 268) 1169 294.6 3.9e-80
CCDS34002.1 MOB1B gene_id:92597|Hs108|chr4         ( 216)  838 213.4 8.7e-56
CCDS58903.1 MOB1B gene_id:92597|Hs108|chr4         ( 221)  838 213.4 8.9e-56
CCDS46340.1 MOB1A gene_id:55233|Hs108|chr2         ( 216)  835 212.7 1.4e-55
CCDS53591.1 MOB2 gene_id:81532|Hs108|chr11         ( 268)  429 113.2 1.6e-25


>>CCDS6520.1 MOB3B gene_id:79817|Hs108|chr9               (216 aa)
 initn: 1511 init1: 1511 opt: 1511  Z-score: 2006.8  bits: 378.4 E(32554): 1.9e-105
Smith-Waterman score: 1511; 100.0% identity (100.0% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
              130       140       150       160       170       180

              190       200       210      
pF1KB9 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
       ::::::::::::::::::::::::::::::::::::
CCDS65 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
              190       200       210      

>>CCDS12081.1 MOB3A gene_id:126308|Hs108|chr19            (217 aa)
 initn: 1249 init1: 1249 opt: 1249  Z-score: 1659.6  bits: 314.2 E(32554): 4e-86
Smith-Waterman score: 1249; 82.1% identity (92.9% similar) in 212 aa overlap (5-216:6-217)

                10        20        30        40        50         
pF1KB9  MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDW
            ::::::::::::::::::::::::::::.::::::.:.::. ::::: ::: :::
CCDS12 MSNPFLKQVFNKDKTFRPKRKFEPGTQRFELHKKAQASLNAGLDLRLAVQLPPGEDLNDW
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB9 VAVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMN
       :::::::::::.::::::: . :::..::::::::::::::::. :..::::: ::.::.
CCDS12 VAVHVVDFFNRVNLIYGTISDGCTEQSCPVMSGGPKYEYRWQDEHKFRKPTALSAPRYMD
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB9 LLMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAE
       :::::::.:::::..::: ::.::::::::  .::: ::::::::::::::::.  ::.:
CCDS12 LLMDWIEAQINNEDLFPTNVGTPFPKNFLQTVRKILSRLFRVFVHVYIHHFDRIAQMGSE
              130       140       150       160       170       180

     180       190       200       210      
pF1KB9 AHVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
       :::::::::::::: :..::: ::::::::::.::::
CCDS12 AHVNTCYKHFYYFVKEFGLIDTKELEPLKEMTARMCH
              190       200       210       

>>CCDS540.1 MOB3C gene_id:148932|Hs108|chr1               (216 aa)
 initn: 1169 init1: 1169 opt: 1169  Z-score: 1553.6  bits: 294.6 E(32554): 3.2e-80
Smith-Waterman score: 1169; 71.8% identity (90.3% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
       :.. ::::: :::::::...::::::::::.:.:::::.::.::...:.:: ::. .::.
CCDS54 MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGENIDDWI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
       :::::::::::::::::. : :.: .::::.:::.:::::::. .:..:. : ::.:: :
CCDS54 AVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
       ::::::  ::.::.::: ::::::::: :.: ::: ::::::::::::::: .. :::::
CCDS54 LMDWIEGLINDEEVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEA
              130       140       150       160       170       180

              190       200       210      
pF1KB9 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
       ::::::::::::. :..:.:..:::::.::: :.::
CCDS54 HVNTCYKHFYYFIREFSLVDQRELEPLREMTERICH
              190       200       210      

>>CCDS539.1 MOB3C gene_id:148932|Hs108|chr1               (268 aa)
 initn: 1169 init1: 1169 opt: 1169  Z-score: 1552.1  bits: 294.6 E(32554): 3.9e-80
Smith-Waterman score: 1169; 71.8% identity (90.3% similar) in 216 aa overlap (1-216:53-268)

                                             10        20        30
pF1KB9                               MSIALKQVFNKDKTFRPKRKFEPGTQRFEL
                                     :.. ::::: :::::::...::::::::::
CCDS53 SRRVGMDEMTFHIWYPQVRAPGQQPQAQLAMALCLKQVFAKDKTFRPRKRFEPGTQRFEL
             30        40        50        60        70        80  

               40        50        60        70        80        90
pF1KB9 HKRAQASLNSGVDLKAAVQLPSGEDQNDWVAVHVVDFFNRINLIYGTICEFCTERTCPVM
       .:.:::::.::.::...:.:: ::. .::.:::::::::::::::::. : :.: .::::
CCDS53 YKKAQASLKSGLDLRSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVM
             90       100       110       120       130       140  

              100       110       120       130       140       150
pF1KB9 SGGPKYEYRWQDDLKYKKPTALPAPQYMNLLMDWIEVQINNEEIFPTCVGVPFPKNFLQI
       .:::.:::::::. .:..:. : ::.:: :::::::  ::.::.::: ::::::::: :.
CCDS53 AGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEEVFPTRVGVPFPKNFQQV
            150       160       170       180       190       200  

              160       170       180       190       200       210
pF1KB9 CKKILCRLFRVFVHVYIHHFDRVIVMGAEAHVNTCYKHFYYFVTEMNLIDRKELEPLKEM
       : ::: ::::::::::::::: .. :::::::::::::::::. :..:.:..:::::.::
CCDS53 CTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIREFSLVDQRELEPLREM
            210       220       230       240       250       260  

             
pF1KB9 TSRMCH
       : :.::
CCDS53 TERICH
             

>>CCDS34002.1 MOB1B gene_id:92597|Hs108|chr4              (216 aa)
 initn: 848 init1: 740 opt: 838  Z-score: 1115.0  bits: 213.4 E(32554): 8.7e-56
Smith-Waterman score: 838; 55.4% identity (82.7% similar) in 202 aa overlap (13-214:11-211)

               10        20        30        40        50        60
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
                   :::.::...  :....:: :.:.:.:.:: .:. ::.:: ::: :.::
CCDS34   MSFLFGSRSSKTFKPKKNIPEGSHQYELLKHAEATLGSG-NLRMAVMLPEGEDLNEWV
                 10        20        30         40        50       

               70        80        90       100       110       120
pF1KB9 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
       ::..:::::.::..:::: .::::..:::::.::::::.: :  . :::    ::.:.. 
CCDS34 AVNTVDFFNQINMLYGTITDFCTEESCPVMSAGPKYEYHWADGTNIKKPIKCSAPKYIDY
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB9 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
       :: :.. :...: .::. .::::::::... : :: :::::..:.: .::: :: .  ::
CCDS34 LMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDPVIQLQEEA
       120       130       140       150       160       170       

              190       200       210         
pF1KB9 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH   
       :.:: .::: .:: :.:::::.:: ::.:.  ..     
CCDS34 HLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLTSKDR
       180       190       200       210      

>>CCDS58903.1 MOB1B gene_id:92597|Hs108|chr4              (221 aa)
 initn: 848 init1: 740 opt: 838  Z-score: 1114.9  bits: 213.4 E(32554): 8.9e-56
Smith-Waterman score: 838; 55.4% identity (82.7% similar) in 202 aa overlap (13-214:16-216)

                  10        20        30        40        50       
pF1KB9    MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQN
                      :::.::...  :....:: :.:.:.:.:: .:. ::.:: ::: :
CCDS58 MEGATDVNESGSRSSKTFKPKKNIPEGSHQYELLKHAEATLGSG-NLRMAVMLPEGEDLN
               10        20        30        40         50         

        60        70        80        90       100       110       
pF1KB9 DWVAVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQY
       .::::..:::::.::..:::: .::::..:::::.::::::.: :  . :::    ::.:
CCDS58 EWVAVNTVDFFNQINMLYGTITDFCTEESCPVMSAGPKYEYHWADGTNIKKPIKCSAPKY
      60        70        80        90       100       110         

       120       130       140       150       160       170       
pF1KB9 MNLLMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMG
       .. :: :.. :...: .::. .::::::::... : :: :::::..:.: .::: :: . 
CCDS58 IDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDPVIQLQ
     120       130       140       150       160       170         

       180       190       200       210         
pF1KB9 AEAHVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH   
        :::.:: .::: .:: :.:::::.:: ::.:.  ..     
CCDS58 EEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLTSKDR
     180       190       200       210       220 

>>CCDS46340.1 MOB1A gene_id:55233|Hs108|chr2              (216 aa)
 initn: 845 init1: 737 opt: 835  Z-score: 1111.1  bits: 212.7 E(32554): 1.4e-55
Smith-Waterman score: 835; 54.5% identity (82.2% similar) in 202 aa overlap (13-214:11-211)

               10        20        30        40        50        60
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
                   :::.::...  :....:: :.:.:.:.:: .:. ::.:: ::: :.:.
CCDS46   MSFLFSSRSSKTFKPKKNIPEGSHQYELLKHAEATLGSG-NLRQAVMLPEGEDLNEWI
                 10        20        30         40        50       

               70        80        90       100       110       120
pF1KB9 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
       ::..:::::.::..:::: ::::: .:::::.::.:::.: :  . :::    ::.:.. 
CCDS46 AVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDY
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB9 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
       :: :.. :...: .::. .::::::::... : :: :::::..:.: .::: :. .  ::
CCDS46 LMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEA
       120       130       140       150       160       170       

              190       200       210         
pF1KB9 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH   
       :.:: .::: .:: :.:::::.:: ::.:.  ..     
CCDS46 HLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGSKDR
       180       190       200       210      

>>CCDS53591.1 MOB2 gene_id:81532|Hs108|chr11              (268 aa)
 initn: 252 init1: 252 opt: 429  Z-score: 571.6  bits: 113.2 E(32554): 1.6e-25
Smith-Waterman score: 429; 34.4% identity (67.4% similar) in 215 aa overlap (4-215:31-239)

                                          10        20        30   
pF1KB9                            MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKR
                                     :...:. :.:. .:. : .:.... . . .
CCDS53 MLGDHCSLPEDQARPGQSLQSGLCCKMVLQAVSKVLRKSKA-KPNGK-KPAAEERKAYLE
               10        20        30        40          50        

            40          50        60        70        80        90 
pF1KB9 AQASLNSGVDL--KAAVQLPSGEDQNDWVAVHVVDFFNRINLIYGTICEFCTERTCPVMS
        . .    .:.  :  : ::   : :.:.: ... ::..::: :.:: :::: .:: .:.
CCDS53 PEHTKARITDFQFKELVVLPREIDLNEWLASNTTTFFHHINLQYSTISEFCTGETCQTMA
       60        70        80        90       100       110        

             100       110       120       130       140       150 
pF1KB9 GGPKYEYRWQDDLKYKKPTALPAPQYMNLLMDWIEVQINNEEIFPTCVGVPFPKNFLQIC
          . .: : :.    : .   ::::....:. ..  ...:..:::  :  ::..: .. 
CCDS53 VC-NTQYYWYDE--RGKKVKCTAPQYVDFVMSSVQKLVTDEDVFPTKYGREFPSSFESLV
      120          130       140       150       160       170     

              160       170       180       190       200       210
pF1KB9 KKILCR-LFRVFVHVYIHHFDRVIVMGAEAHVNTCYKHFYYFVTEMNLIDRKELEPLKEM
       .:: :: ::.:..:.:  :: .....  ..:.:: : ::  :. :.::.: ::   . ..
CCDS53 RKI-CRHLFHVLAHIYWAHFKETLALELHGHLNTLYVHFILFAREFNLLDPKETAIMDDL
          180       190       200       210       220       230    

                                         
pF1KB9 TSRMCH                            
       :  .:                             
CCDS53 TEVLCSGAGGVHSGGSGDGAGSGGPGAQNHVKER
          240       250       260        




216 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:02:31 2016 done: Fri Nov  4 17:02:31 2016
 Total Scan time:  1.780 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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