GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:02:20

Sequence gi568815588f:123054918_123262829 : 207912 bp : 44.71% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 Intr -   8108   7925  184  2  1   32   36   157 0.028   4.26
 1.05 Intr -  18558  18325  234  0  0  -30   72   235 0.058   7.99
 1.04 Intr -  30747  30616  132  0  0   -3   89   178 0.958   9.64
 1.03 Intr -  34137  33985  153  0  0   53  119    52 0.803   5.07
 1.02 Intr -  44059  43979   81  1  0   69   75    81 0.402   4.73
 1.01 Init -  45942  45817  126  0  0   91   42    33 0.296  -0.81
 1.00 Prom -  52149  52110   40                              -1.56

 2.03 PlyA -  52324  52319    6                               1.05
 2.02 Term -  57141  56993  149  1  2   54   38   117 0.539   1.36
 2.01 Init -  63346  63166  181  1  1   83    0   238 0.349  11.85
 2.00 Prom -  68537  68498   40                              -4.26

 3.00 Prom +  72656  72695   40                              -5.86
 3.01 Init +  79516  80098  583  0  1   54   64   310 0.839  20.55
 3.02 Intr +  81033  81533  501  1  0   54   81   484 0.020  37.25
 3.03 Term +  82141  82814  674  2  2   83   54  1200 0.986 110.02
 3.04 PlyA +  85737  85742    6                               1.05

 4.00 Prom +  85815  85854   40                              -5.46
 4.01 Init +  93032  93144  113  1  2   44   58   141 0.121   4.43
 4.02 Intr +  93461  93729  269  2  2   47   82   242 0.139  16.68
 4.03 Term +  94653  95206  554  1  2  116   47   879 0.999  81.08
 4.04 PlyA +  95736  95741    6                               1.05

 5.00 Prom +  96990  97029   40                              -7.16
 5.01 Init +  99830 100199  370  1  1   75   17   498 0.782  36.56
 5.02 Intr + 102812 102963  152  0  2  106  102    29 0.970   5.98
 5.03 Intr + 105490 105648  159  0  0   29   72   160 0.990   8.68
 5.04 Intr + 107319 107496  178  2  1  101  103   103 0.999  12.59
 5.05 Term + 107695 107915  221  2  2   70   48   174 0.540   8.80
 5.06 PlyA + 108954 108959    6                               1.05

 6.03 PlyA - 108990 108985    6                               1.05
 6.02 Term - 116958 116615  344  1  2   32   49   308 0.603  15.97
 6.01 Init - 148661 148544  118  2  1   54   64   103 0.723   4.89
 6.00 Prom - 153936 153897   40                              -1.26

 7.00 Prom + 157741 157780   40                              -5.86
 7.01 Init + 164377 164483  107  0  2   81   37   131 0.154   5.49
 7.02 Term + 171019 171151  133  1  1   56   53   110 0.188   1.86
 7.03 PlyA + 172348 172353    6                               1.05

 8.03 PlyA - 176176 176171    6                               1.05
 8.02 Term - 185687 185451  237  2  0   67   48   279 0.887  17.97
 8.01 Init - 190598 190578   21  2  0   58  111     8 0.212  -1.45
 8.00 Prom - 196313 196274   40                              -4.26

 9.00 Prom + 196331 196370   40                              -4.06
 9.01 Sngl + 199313 201040 1728  1  0   30   41  1256 0.717 110.00
 9.02 PlyA + 203140 203145    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +   5385   5449   65  2  2   37  116    60 0.818   4.32
S.002 Intr -  72341  72213  129  2  0   64  103    83 0.861   8.29
S.003 Term +  80380  80537  158  2  2  112   44    45 0.891   0.60
S.004 Init +  81134  81533  400  1  1  104   81   557 0.967  51.43
S.005 Init +  93462  93729  268  2  1   83   82   233 0.855  19.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:123054918_123262829|GENSCAN_predicted_peptide_1|304_aa
MTCRRMSGEGSFSLEGLSQNYSQKALETYSQDMPQRSSLSRQSGNDLSILHRHSLAEPRE
THEDVKDSKHQGFSRWALVIFQQQHFPRVAPQSVQQDDGLCPLIVPEGPRPVSWHLKGAL
TGLGAVKKSEDDIIEGDLAVSEIKEEGGCEPDEDPKRMCCQEAQVRQANSLSPPQTVHGT
SRGQGSFLNPLLFVESTCSLGLRHRCGLHGPTEDVPESLDVAVTGECIYSGVFGALPFMD
SKITKHDNEDGGMSRADSVDDQEGGRADNMDTLDKGMIHVLIGTEQNCARFHHATQNDVQ
FKTX

>gi568815588f:123054918_123262829|GENSCAN_predicted_CDS_1|912_bp
atgacctgcaggagaatgagtggagagggctctttctctctcgaggggctttcacagaac
tactcccagaaggccctggagacctactctcaggacatgcctcagcggtcaagtctttcc
agacagagtggcaatgatcttagcatccttcaccggcacagccttgccgagcccagggag
acgcatgaagacgtgaaggactccaagcatcaaggcttctctcggtgggccctggtcata
ttccaacagcagcatttccccagagtggctccccagagtgttcaacaggacgatggcctg
tgtcccctcattgttccagaaggccccaggcccgtctcatggcatctgaagggggctctg
actgggttaggagcagtgaagaagagtgaggatgatatcatagagggtgacttggcagtt
agtgagatcaaggaggagggtggctgcgagccagatgaggaccccaagaggatgtgctgc
caggaagcacaggtaagacaagcaaacagcctgagtcccccacaaacagtgcatggaacc
agcagaggccagggctccttcctcaaccccttgctcttcgtggagtccacctgctccctg
ggcctcagacacagatgtggcctgcatgggcccacggaggacgttccagagtccctcgat
gtggccgtcacaggggagtgcatctactcaggagtgtttggggcattacccttcatggat
tcaaagatcaccaagcatgacaatgaagatggcgggatgtcaagagcagacagtgttgat
gaccaagaagggggtagagcagacaacatggatacgctggacaaagggatgattcacgtt
cttattgggacggagcagaattgtgcaagatttcatcatgctactcagaacgacgtgcaa
tttaaaacttnn

>gi568815588f:123054918_123262829|GENSCAN_predicted_peptide_2|109_aa
MVSAVQLGACLPARAGGRLAAVLLPVQALGGGSGGEAVTDFECPDPSNTPFGACFRCSRI
ARIVKLFDFSQPGTSGGVESASGKSAIGFLFREAKIHATQHNLSIFISI

>gi568815588f:123054918_123262829|GENSCAN_predicted_CDS_2|330_bp
atggtttcggccgtccagcttggggcctgcctgccagctcgggcgggtggccgacttgct
gcagtgctgctcccagtccaggcactgggtggcggctctggtggtgaagcagtcactgac
ttcgaatgtcccgatccatccaacactccgtttggggcgtgcttccggtgttcccgcata
gctaggattgtcaagctctttgattttagccaaccaggtacaagtggaggtgttgaaagc
gcctctggaaagtctgctataggatttctgttccgtgaagccaaaattcatgctacccag
cacaaccttagtatcttcatctctatttaa

>gi568815588f:123054918_123262829|GENSCAN_predicted_peptide_3|585_aa
MSLKCLPHGLLVRTGELFLKPVEWNVLSLSRSAKVQCGSLRTSLPSRRAADAAACRGGGS
YAAAPSVHLAPIKALVRQLQTPAGRRDFLGESAVVGVTDSELIREPWAPAARAEGCPSES
SRRCREAVAPAAPPSDARVLAGSARIRTQAHPLLVPGEGSLFGFPGLKAKATRISESEDA
VRGLTPGFPYYRLDVEFRLWSDFRPLACSPRRPPVPLPPSRGPGGEGTMPEPGPDAAGTA
SAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAAAA
AKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRP
EASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAA
PGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYL
SSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHE
NSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV

>gi568815588f:123054918_123262829|GENSCAN_predicted_CDS_3|1758_bp
atgagtcttaaatgtctgcctcatgggcttctcgtgcgaaccggggagctgtttttaaag
ccagtggagtggaatgtcctttcactaagccgttctgcaaaggtccagtgtggttctcta
aggacttcgctgccgtcgagacgcgcagcggatgccgctgcttgccgcggcggaggaagc
tacgccgctgcgccttcggttcaccttgcccccattaaagcgttagttagacagctccaa
acgccagctggccggagagacttcctgggagaaagtgctgtcgtcggggtcacagactcg
gagttgatccgcgagccttgggcaccggcggccagagcagaggggtgcccttccgagagc
agccgtcggtgccgagaagctgttgccccagcagccccaccgagtgacgcgcgggttttg
gccgggtcagcgcgcatacgcacacaggcacacccactcctggtcccgggggaaggctca
ctcttcggttttccagggctaaaggccaaggccacgcggatttctgagtccgaagacgca
gtgcgaggacttacacctggattcccttactatcggctggatgttgagttccgtttatgg
tctgatttccggcctctcgcctgctcgccccgccgcccgcctgtcccgctccctccctcc
cggggacccggaggagaggggaccatgccggaacccgggccggacgctgccggcaccgcc
agcgcacagccccaaccgccgccgccccccccacccgctcccaaggagtccccgttctcc
atcaagaacctgctcaacggagaccaccaccggccgccccctaagcctcagccgccccca
cggacgctcttcgcgccagcctcggctgccgccgccgccgccgctgccgctgccgcggcg
gccaagggggccctggagggcgccgcgggcttcgcgctctcgcaggtgggcgacctggct
ttccctcgctttgagatcccggcgcagaggtttgccctgcccgcgcactacctggagcgc
tccccagcctggtggtacccctacaccctgacccccgccggcggccacctcccgcgacct
gaagcctcggagaaggccttgctgagagactcctcccccgcctccggcacagaccgcgac
tctccggagccactgctcaaggccgaccccgatcacaaggagctggactccaagagcccg
gacgagatcattctggaggagagcgactccgaggaaagcaaaaaggaaggcgaagcggcg
ccaggcgcggccggggcgagcgtaggggcggcggcggccactccgggcgcagaagactgg
aagaagggcgctgaaagtccagagaagaagccggcgtgccgcaagaagaagacgcgcaca
gtcttctcgcgcagccaggtcttccagctcgagtccaccttcgacatgaagcgctatctg
agcagctcggagcgagccggcctggccgcgtccctgcacctcaccgagacgcaggtcaag
atctggttccagaaccgccgcaacaagtggaagcggcagctggcggcggagctggaggcg
gccaacctgagccatgccgcggcgcagcgcatcgtgcgggtgcccatcctctaccacgag
aactcggcggccgagggcgcggcggctgcagccgcgggggccccggtgccagtcagccag
ccgctgctcaccttcccgcaccccgtctactactcgcacccggtggtctcttccgtgccg
ctgctacggccggtctga

>gi568815588f:123054918_123262829|GENSCAN_predicted_peptide_4|311_aa
MPARPSARSGGAPVLCAWPERFEIFRGRSAALRLAAFGMGSKEDAGKGCPAAGGVSSFTI
QSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGWKAPACFCPDQHGPKEQGPKHHP
PIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAE
RQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRN
KWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSAL
PLYNLYNKLDY

>gi568815588f:123054918_123262829|GENSCAN_predicted_CDS_4|936_bp
atgcccgccaggccctcggcgcgctctgggggcgcaccggtgctgtgtgcctggccggag
cgttttgaaattttccggggccgctcggcggcgctgcgattggccgcgttcgggatgggc
agcaaagaagatgcgggcaaggggtgtccggcggccggtggcgtctccagcttcaccatc
cagtccatcctgggcgggggcccctcggaggcaccgcgggagcccgtcggctggccagcc
aggaagcgcagcctgtccgtgtcctcggaggaggaggagccggacgacggctggaaggcg
cccgcctgcttctgcccagaccagcacggccctaaggagcagggccccaagcaccatccc
cccatcccttttccttgcctgggtacccccaagggcagcggaggctcgggcccgggcggc
ttggagcgcacgcctttcctctctccttcgcactcggactttaaagaagagaaagagagg
ctcctgcccgcgggctcgccctcgccggggtccgagcggccgcgggacggcggcgctgag
cggcaggccggcgcggccaagaagaagacgcgcaccgtcttttcgcgcagccaggtgtac
cagctcgagtccaccttcgacatgaagcgctacctgagcagctcggagcgcgcctgcctc
gcctccagcctgcagctcacggagacccaggtaaagacttggttccagaaccgccgcaac
aagtggaagcggcagctctcggctgagctggaggcggccaacatggcgcacgcgtcggcg
cagactctggtgagcatgccgctggtgttccgggacagttcgctgctgcgcgtgccggtg
ccgcgctcgctcgcctttcccgcgccgctctactacccgggaagcaacctctcggcctta
cctctctacaacctatacaacaagctcgactactga

>gi568815588f:123054918_123262829|GENSCAN_predicted_peptide_5|359_aa
MGRVRTLAGECSAQAQAQSLLAVVLSAPPSGGTPSARLSVRSPSPRDPWGLWAPVLQMTG
SNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCA
FYVENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSV
SGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAV
EYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFN
KKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETKPK

>gi568815588f:123054918_123262829|GENSCAN_predicted_CDS_5|1080_bp
atggggcgagtccggaccttggcgggcgagtgctcggcgcaggcgcaagcgcagagtctc
ctcgcggtcgtcctctcggcccctccctctggggggacccccagtgccaggctgtcagtg
cgcagccccagcccgcgggacccctggggactctgggcgcctgttctgcagatgaccggt
tctaacgagttcaagctgaaccagccacccgaggatggcatctcctccgtgaagttcagc
cccaacacctcccagttcctgcttgtctcctcctgggacacgtccgtgcgtctctacgat
gtgccggccaactccatgcggctcaagtaccagcacaccggcgccgtcctggactgcgcc
ttctacgtagaaaatcttgttgggacccatgatgcccctatcagatgtgttgaatactgt
ccagaagtgaatgtgatggtcactggaagttgggatcagacagttaaactgtgggatccc
agaactccttgtaatgctgggaccttctctcagcctgaaaaggtatataccctctcagtg
tctggagaccggctgattgtgggaacagcaggccgcagagtgttggtgtgggacttacgg
aacatgggttacgtgcagcagcgcagggagtccagcctgaaataccagactcgctgcata
cgagcgtttccaaacaagcagggttatgtattaagctctattgaaggccgagtggcagtt
gagtatttggacccaagccctgaggtacagaagaagaagtatgccttcaaatgtcacaga
ctaaaagaaaataatattgagcagatttacccagtcaatgccatttcttttcacaatatc
cacaatacatttgccacaggtggttctgatggctttgtaaatatttgggatccatttaac
aaaaagcgactgtgccaattccatcggtaccccacgagcatcgcatcacttgccttcagt
aatgatgggactacgcttgcaatagcgtcatcatatatgtatgaaatggatgacacagaa
catcctgaagatggtatcttcattcgccaagtgacagatgcagaaacaaaacccaagtga

>gi568815588f:123054918_123262829|GENSCAN_predicted_peptide_6|153_aa
MIPDSKTDSGPWMLGYLLPRALLICHSLGLQFVLSFRNGNDKRRNNGRAKKGHGHVQPIC
CTNCAQCVPKDKAIKKFVIRNIVEAAAVRDISEAGIFDAYVLPKLYVKLHYCVSCAIHNK
VVRNQSCEARKDRTPPPRFRPAGAAPPPLPKPI

>gi568815588f:123054918_123262829|GENSCAN_predicted_CDS_6|462_bp
atgatacctgattccaagaccgactctggtccctggatgctgggctacctccttcctagg
gccctgctgatctgccactcactgggcttgcagtttgtgctgtccttccgtaatgggaat
gacaaaagaaggaacaacggtcgtgccaaaaagggccatggccacgtgcagcctatttgc
tgcactaactgtgcccaatgcgtgcccaaggacaaggccattaagaaattcgtcattcga
aacatagtggaggccgcagcagtcagggacatttctgaagcgggcatcttcgatgcctat
gtgcttcccaagctgtatgtgaagctacattactgtgtgagttgtgcaattcacaacaaa
gtagtcaggaatcaatcttgtgaagcccgcaaggaccgaacacccccaccccgatttaga
cctgcgggtgctgccccacctcccctaccaaagcccatataa

>gi568815588f:123054918_123262829|GENSCAN_predicted_peptide_7|79_aa
MMFFLFAMEVGWSCRFCSLILDHGSTLVLVLTSLQGFPKSSPSSSKFYKSPGQGQNATSR
FAKTARVTFTPVHKFLISI

>gi568815588f:123054918_123262829|GENSCAN_predicted_CDS_7|240_bp
atgatgttctttctcttcgcaatggaagtaggatggagctgccgattctgctccctgatc
ctggaccacggctccacccttgtcctggtgttgacatcccttcagggattccctaaatca
tctccctcaagttcaaagttctacaaatctccagggcaggggcaaaatgccaccagtcgc
tttgctaaaacagcaagagtcacctttactccagttcacaagttcctcatctccatctga

>gi568815588f:123054918_123262829|GENSCAN_predicted_peptide_8|85_aa
MSSFLMQVIHTARQIPGGPSKGPRAKVIPVEISGTWIHKIPLEILSLAFDDDDDDDDDDD
DAETWGLPRLYLLGILGKGAHQNIF

>gi568815588f:123054918_123262829|GENSCAN_predicted_CDS_8|258_bp
atgagctcttttctgatgcaggtgatacacacagccagacaaatcccaggtggcccatcc
aaaggaccaagagcaaaagttattccagttgagatcagtggaacttggattcacaaaatc
cccctggagatcctctctctggcctttgatgatgatgatgatgatgatgatgatgatgat
gacgcagaaacatgggggcttccaaggctgtacctcctaggcatcctggggaaaggagcc
catcagaacatcttctag

>gi568815588f:123054918_123262829|GENSCAN_predicted_peptide_9|575_aa
MLMLGGFAFSVELDLLLKTDPEPNLLSPLTQPLSPSHHYYHHHHHHHHTTTTTIITIIIT
PPPPPSSLSSSHHHHHHHHTTTTTIITIIIITTPPPSPPPPSHHHHHCRHHYHHHHTTTT
IITPPPPPPSSSLSSSSSHRHHHHHHHHTTTTTTTVTITIIIITPPPPPPSSLSSSSSPH
HHHHHHHHHTTTTTVTTTTTTITPPPPPPSSSLSSSSSHHHHHHHHHTTTTTTVITIIII
TPPPSPSSHHHHHHHHHHHTTTTITPPPPSLSSPSSHHHHHHHHHHHHTTTTITITIITP
PPPPLPSPSSHHHHHHHHTTTTITIITPPPSLPSPSSHHHHHHYHHHTTTIITPPPPSYT
ITINTPPPPSYTITIITPPPPSLPSPSSHHHHQHYHHHHHTTTTTITITIITLPPPLPSP
SSHYHHHYHHHHHTTTTNITITIITPPPPPLPSPPSHHHHHHHHHHTTTTTITIITPPPP
PLPSPSLHHPHHYHHHHHTTTTTITITIITPPPSLPSPSLHHHHQYTTTTITITIITSPP
PSHHHYNYHHHYHITTIIITIINIIPPPSSSHPLP

>gi568815588f:123054918_123262829|GENSCAN_predicted_CDS_9|1728_bp
atgctgatgttaggtggatttgcattctctgtcgaactggatctcttgctcaaaactgac
cctgagcctaaccttctttccccacttacacagccattgtcaccatcgcaccactactat
catcatcaccaccaccatcatcacaccaccaccaccaccatcatcactatcatcatcaca
ccaccaccaccaccatcatcactatcatcatcacaccatcaccaccaccatcatcacacc
accaccaccaccatcatcactatcatcatcatcaccacaccaccaccatcaccaccacca
ccatcacaccaccaccaccactgtcgtcatcactatcatcatcatcacaccaccaccacc
atcatcacaccaccaccaccaccaccgtcgtcatcactatcatcatcatcatcacaccgc
caccatcaccaccaccaccatcacaccaccaccaccaccaccaccgtcaccatcactatc
atcatcatcacaccaccaccaccaccaccatcatcactatcatcatcatcatcaccacac
caccaccatcaccaccaccaccatcacaccaccaccaccactgtcaccaccaccaccacc
accatcacaccaccaccaccgccaccgtcgtcatcactatcatcatcatcatcacaccac
caccatcaccaccaccatcacaccaccaccaccactactgtcatcactatcatcatcatc
acaccaccaccatcaccatcatcacaccaccaccaccatcaccatcaccatcatcacacc
accaccaccatcacaccaccaccaccatcattatcatcaccatcatcacaccaccaccac
caccatcaccatcaccatcatcacaccaccaccaccattaccatcaccatcatcacacca
ccaccaccaccattaccatcaccatcatcacaccaccaccatcaccatcatcacaccacc
accaccatcaccatcatcacaccaccaccatcattaccatcaccatcatcacaccaccac
caccaccattaccatcatcacaccaccaccatcatcacaccaccaccaccatcatatacc
atcaccatcaacacaccaccaccaccatcatataccatcaccatcatcacaccgccacca
ccatcattaccatcaccatcatcacaccaccaccaccaacattaccatcaccatcatcac
accaccaccaccaccattaccatcaccatcatcacactaccaccaccattaccatcacca
tcatcacactaccaccatcattaccatcaccatcatcacaccaccaccaccaacattacc
atcaccatcatcacgccaccaccaccaccattaccatcaccaccatcacaccaccaccac
caccatcaccatcatcacaccaccaccaccaccatcaccatcatcacaccaccaccacca
ccattaccatcaccatcattacaccacccccaccattaccatcaccatcatcacaccacc
accaccaccattaccatcaccatcatcacacccccaccatcattaccatcaccatcatta
caccaccaccatcagtacaccaccaccaccattaccatcaccatcatcacatcaccacca
ccatcacaccatcactataattaccaccaccattatcacatcaccaccattatcatcacc
atcatcaacatcataccaccaccatcatcatcacatcctcttccttga