hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080306/iprscan-20080306-12303318/chunk_1/iprscan-20080306-12303318.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB8993 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00447.8.fs HSF-type DNA-binding 28.3 4.5e-08 3 PF00447.8.ls HSF-type DNA-binding -29.7 1.5e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00447.8.fs 1/3 80 117 .. 1 44 [. 1.0 5.2 PF00447.8.ls 1/1 80 285 .. 1 207 [] -29.7 1.5e-07 PF00447.8.fs 2/3 133 147 .. 55 69 .. 14.3 0.00061 PF00447.8.fs 3/3 177 195 .. 89 107 .. 13.1 0.0014 Alignments of top-scoring domains: PF00447.8.fs: domain 1 of 3, from 80 to 117: score 1.0, E = 5.2 *->PaNEFLsKLwrlVeDpstddl..IcWStnGnSFvVlDeerFAkelL< F +KLw +Ve +d++++I+W +nG +V++ee F ke+L pF1KB8993 80 ----FPRKLWKIVE---SDQFksISWDENGTC-IVINEELFKKEIL 117 -* pF1KB8993 - - PF00447.8.ls: domain 1 of 1, from 80 to 285: score -29.7, E = 1.5e-07 *->PaNEFLsKLwrlVeDpstddl..IcWStnGnSFvVlDeerFAkelL. F +KLw +Ve +d++++I+W +nG +V++ee F ke+L+ pF1KB8993 80 ----FPRKLWKIVE---SDQFksISWDENGTC-IVINEELFKKEILe 118 ...P.kYFKHNNFASFVRQLNmYGFrKVvhiesG.....rkvdpdrdelw ++ P + F + SFVRQLN YGF K++ + + ++ ++++++ pF1KB8993 119 tkaPyRIFQTDAIKSFVRQLNLYGFSKIQQNFQRsaflaTFLSEEKESSV 168 .....EFqhPnFkrGqehLLenIkRKksasrskpeeqknqqedlhkilse ++ + +PnFkrG++ LL +kR++ + + ++ ++++ +e pF1KB8993 169 lsklkFYYNPNFKRGYPQLLVRVKRRIGVKN-------ASP--ISTLFNE 209 ..lqvmrgsQsnlesrlsalkeE......NeaLWrEvavLRqkhvKLRqQ + ++ ++n+e+ sal E ++++ a++ ++ L ++ + pF1KB8993 210 dfNKKHFRAGANMENHNSALAAEaseeslFSASKNLNMPLTRESS----V 255 QqvidKllqflvslvqpnklksisgvkrksliHEL<-* q+i + + s + p + + +v + + + pF1KB8993 256 RQIIANSSVPIRSGFPPPS--PSTSVGPSEQ---I 285 PF00447.8.fs: domain 2 of 3, from 133 to 147: score 14.3, E = 0.00061 *->SFVRQLNmYGFrKVv<-* SFVRQLN YGF K++ pF1KB8993 133 SFVRQLNLYGFSKIQ 147 PF00447.8.fs: domain 3 of 3, from 177 to 195: score 13.1, E = 0.0014 *->hPnFkrGqehLLenIkRKk<-* +PnFkrG++ LL +kR++ pF1KB8993 177 NPNFKRGYPQLLVRVKRRI 195 //