FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8989, 390 aa 1>>>pF1KB8989 390 - 390 aa - 390 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6203+/-0.00106; mu= 8.1276+/- 0.064 mean_var=173.0493+/-33.983, 0's: 0 Z-trim(109.8): 15 B-trim: 98 in 1/50 Lambda= 0.097497 statistics sampled from 11173 (11179) to 11173 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.343), width: 16 Scan time: 3.140 The best scores are: opt bits E(32554) CCDS11425.1 PTRF gene_id:284119|Hs108|chr17 ( 390) 2422 352.7 3.3e-97 CCDS2313.1 SDPR gene_id:8436|Hs108|chr2 ( 425) 647 103.1 5e-22 CCDS35083.1 MURC gene_id:347273|Hs108|chr9 ( 364) 391 67.0 3.1e-11 >>CCDS11425.1 PTRF gene_id:284119|Hs108|chr17 (390 aa) initn: 2422 init1: 2422 opt: 2422 Z-score: 1858.7 bits: 352.7 E(32554): 3.3e-97 Smith-Waterman score: 2422; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390) 10 20 30 40 50 60 pF1KB8 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 IIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 VKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKESEALPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKESEALPE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 KEGEELGEGERPEEDAAALELSSDEAVEVEEVIEESRAERIKRSGLRRVDDFKKAFSKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KEGEELGEGERPEEDAAALELSSDEAVEVEEVIEESRAERIKRSGLRRVDDFKKAFSKEK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 MEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAERREKLKTSRDKLRKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAERREKLKTSRDKLRKS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 FTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGADDDEGGAERGEAGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGADDDEGGAERGEAGD 310 320 330 340 350 360 370 380 390 pF1KB8 LRRGSSPDVHALLEITEESDAVLVDKSDSD :::::::::::::::::::::::::::::: CCDS11 LRRGSSPDVHALLEITEESDAVLVDKSDSD 370 380 390 >>CCDS2313.1 SDPR gene_id:8436|Hs108|chr2 (425 aa) initn: 680 init1: 418 opt: 647 Z-score: 508.9 bits: 103.1 E(32554): 5e-22 Smith-Waterman score: 703; 38.5% identity (67.5% similar) in 382 aa overlap (14-379:14-355) 10 20 30 40 50 pF1KB8 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGA----GSEELIKSD-QVNGVLVL :: : . .::: . . . :: . ..:: :... :::.: :: CCDS23 MGEDAAQAEKFQHPG-SDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVL 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 SLLDKIIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVR .::::... .: .: .: ..:.:: .::.:..::..:.::.: .:.::::::::::: : CCDS23 TLLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSR 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 KVSVNVKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKES :::.....:. ..:: .:.:.:: :.:.:::: .:::.:.:.: ..::.. ... . : CCDS23 KVSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPV--S 120 130 140 150 160 170 180 190 200 210 220 pF1KB8 EALPEKEGEELGEGERPEEDAAALELSSD-------EAVE--VEEVIEESRAERIKRSGL :. :: : :.. :: ...:::: ::.: .:: .::::::.::::.: CCDS23 GAVEGKE-ELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSL 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB8 RRVDDFKKAFSKEKMEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAER ..::..::::: :...::.::::::..: .:: CCDS23 KKVDSLKKAFS-----------------------------RQNIEKKMNKLGTKIVSVER 240 250 260 290 300 310 320 330 340 pF1KB8 REKLKTSRDKLRKSFTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGA :::.: ::.: .: . .:.. .:: :.:: ::.:::. .. . :. .. . CCDS23 REKIK-------KSLTSNHQKISSGKSSPFKVSPLTFGRKKVREGESHAENETKSEDLPS 270 280 290 300 310 320 350 360 370 380 390 pF1KB8 DDDEGGAERGEAGDLRRGSSPDVHALLE--ITEESDAVLVDKSDSD ... . .. :. .. . . ::.: :.::. CCDS23 SEQMPNDQEEESFAEGHSEASLASALVEGEIAEEAAEKATSRGSNSGMDSNIDLTIVEDE 330 340 350 360 370 380 CCDS23 EEESVALEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQVHQTS 390 400 410 420 >>CCDS35083.1 MURC gene_id:347273|Hs108|chr9 (364 aa) initn: 665 init1: 357 opt: 391 Z-score: 315.2 bits: 67.0 E(32554): 3.1e-11 Smith-Waterman score: 562; 33.8% identity (68.2% similar) in 305 aa overlap (47-347:26-295) 20 30 40 50 60 70 pF1KB8 PDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDKIIGAVDQIQLTQAQLE :: .. ....:::. . ::..: .: ..: CCDS35 MEHNGSASNADKIHQNRLSSVTEDEDQDAALTIVTVLDKVASIVDSVQASQKRIE 10 20 30 40 50 80 90 100 110 120 130 pF1KB8 ERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVNVKTVRGSLERQAGQIK ::. :::.:..:.: .: ::...:..:.. ..::.::.::::...: :.. .:.: ..: CCDS35 ERHREMENAIKSVQIDLLKLSQSHSNTGHIINKLFEKTRKVSAHIKDVKARVEKQQIHVK 60 70 80 90 100 110 140 150 160 170 180 190 pF1KB8 KLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKESEALPEKEGEELGEGERPEEDA :.::.. :.... .:.:.:.:.. . :..::. :. . : :.. :. . : : CCDS35 KVEVKQEEIMKKNKFRVVIFQEKFRCPTSLSVVKD----RNLTENQEEDDDDIFDPPVD- 120 130 140 150 160 170 200 210 220 230 240 250 pF1KB8 AALELSSDEAVEVEEVIEESRAERIKRSGLRRVDDFKKAFSKEKMEKTKVRTRENLEKTR ::::: : .::::. :...:: ...:..::::::: CCDS35 ----LSSDE----EYYVEESRSARLRKSGKEHIDNIKKAFSKE----------------- 180 190 200 260 270 280 290 300 310 pF1KB8 LKTKENLEKTRHTLEKRMNKLGTRLVPAERREKLKTSRDKLRKSFTPDHVVYARSKTAVY :..:::..:.:..:.. ::.: ::::.:. : ..::.: . : : .. CCDS35 -----NMQKTRQNLDKKVNRIRTRIVTPERRERLRQSGERLRQSGERLRQSGERFKKSIS 210 220 230 240 250 260 320 330 340 350 360 370 pF1KB8 KVPPF--TFHVKKIREGQVEVLKATEMV--EVGADDDEGGAERGEAGDLRRGSSPDVHAL .. : .:.....:.:. ... : :.:.: CCDS35 NAAPSKEAFKMRSLRKGKDRTVAEGEECAREMGVDIIARSESLGPISELYSDELSEPEHE 270 280 290 300 310 320 380 390 pF1KB8 LEITEESDAVLVDKSDSD CCDS35 AARPVYPPHEGREIPTPEPLKVTFKSQVKVEDDESLLLDLKHSS 330 340 350 360 390 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 16:52:34 2016 done: Fri Nov 4 16:52:34 2016 Total Scan time: 3.140 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]