Result of FASTA (omim) for pF1KB8938
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8938, 290 aa
  1>>>pF1KB8938 290 - 290 aa - 290 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8311+/-0.00041; mu= -5.7833+/- 0.026
 mean_var=480.3063+/-96.314, 0's: 0 Z-trim(125.4): 101  B-trim: 0 in 0/59
 Lambda= 0.058521
 statistics sampled from 48814 (48931) to 48814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.574), width:  16
 Scan time:  9.110

The best scores are:                                      opt bits E(85289)
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 2069 188.0 1.9e-47
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 2052 186.5   5e-47
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243)  788 79.7   6e-15
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243)  788 79.7   6e-15
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242)  784 79.4 7.5e-15
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242)  777 78.8 1.1e-14
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106)  717 73.3 2.3e-13
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  414 48.2   2e-05
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230)  411 47.9 2.2e-05
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217)  406 47.4 2.8e-05
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  396 46.6 5.2e-05
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224)  396 46.6 5.2e-05
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  396 46.6 5.2e-05
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288)  396 46.7 6.1e-05
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233)  388 45.9 8.5e-05
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  379 45.3 0.00016
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153)  369 44.1  0.0002
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 45.3 0.00026
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  376 45.3 0.00026
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 45.3 0.00026
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 45.3 0.00026
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 45.3 0.00026
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 45.3 0.00026
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  376 45.3 0.00026
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235)  369 44.3 0.00026
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  362 43.7 0.00038
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  362 43.8 0.00043
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  339 42.0  0.0018
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250)  318 40.1  0.0054
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283)  318 40.1  0.0058
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  316 39.9  0.0061
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 40.3   0.008
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 40.3   0.008
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 40.3   0.008
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 40.3   0.008
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 40.3   0.008
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432)  317 40.3   0.008
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 40.3   0.008
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 40.3   0.008
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260)  310 39.4  0.0088


>>NP_062458 (OMIM: 142985) homeobox protein Hox-D8 isofo  (290 aa)
 initn: 2069 init1: 2069 opt: 2069  Z-score: 973.0  bits: 188.0 E(85289): 1.9e-47
Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB8 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
              250       260       270       280       290

>>NP_001186675 (OMIM: 142985) homeobox protein Hox-D8 is  (289 aa)
 initn: 1436 init1: 1436 opt: 2052  Z-score: 965.3  bits: 186.5 E(85289): 5e-47
Smith-Waterman score: 2052; 99.7% identity (99.7% similar) in 290 aa overlap (1-290:1-289)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSQMFPWMRPQA-PGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
              190        200       210       220       230         

              250       260       270       280       290
pF1KB8 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
     240       250       260       270       280         

>>XP_016880053 (OMIM: 142963) PREDICTED: homeobox protei  (243 aa)
 initn: 941 init1: 699 opt: 788  Z-score: 389.4  bits: 79.7 E(85289): 6e-15
Smith-Waterman score: 878; 52.1% identity (68.8% similar) in 288 aa overlap (1-287:1-235)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       ::::::: :.::::.        ::.. :.:::: :: ..::: ..      .:: :..:
XP_016 MSSYFVNSLFSKYKT--------GESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG
               10                20        30              40      

               70        80        90       100       110       120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
                .  :::             . ::..:  ..  .: ::  :           
XP_016 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP-----------
                  50                     60        70              

              130       140       150       160        170         
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS
          :. .::::.:..::::: :::: .: .: . .:::: ::: ......::. .  .::
XP_016 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS
                80        90       100        110       120        

     180       190       200       210       220       230         
pF1KB8 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER
        ::.:.::::::::: :::::::::::.:::::::::::::::::::::::::::.::::
XP_016 PSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER
      130       140       150       160       170       180        

     240       250       260       270       280       290     
pF1KB8 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN     
       ::::::::::::::::::::::: :. : .. : :.. ..  :   ::        
XP_016 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-KQKLERAPEAADEGDAQKGDKK
      190       200       210       220        230       240   

>>NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [Homo  (243 aa)
 initn: 941 init1: 699 opt: 788  Z-score: 389.4  bits: 79.7 E(85289): 6e-15
Smith-Waterman score: 878; 52.1% identity (68.8% similar) in 288 aa overlap (1-287:1-235)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       ::::::: :.::::.        ::.. :.:::: :: ..::: ..      .:: :..:
NP_076 MSSYFVNSLFSKYKT--------GESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG
               10                20        30              40      

               70        80        90       100       110       120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
                .  :::             . ::..:  ..  .: ::  :           
NP_076 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP-----------
                  50                     60        70              

              130       140       150       160        170         
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS
          :. .::::.:..::::: :::: .: .: . .:::: ::: ......::. .  .::
NP_076 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS
                80        90       100        110       120        

     180       190       200       210       220       230         
pF1KB8 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER
        ::.:.::::::::: :::::::::::.:::::::::::::::::::::::::::.::::
NP_076 PSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER
      130       140       150       160       170       180        

     240       250       260       270       280       290     
pF1KB8 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN     
       ::::::::::::::::::::::: :. : .. : :.. ..  :   ::        
NP_076 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-KQKLERAPEAADEGDAQKGDKK
      190       200       210       220        230       240   

>>NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [Homo  (242 aa)
 initn: 885 init1: 646 opt: 784  Z-score: 387.6  bits: 79.4 E(85289): 7.5e-15
Smith-Waterman score: 917; 55.2% identity (68.8% similar) in 288 aa overlap (1-286:1-238)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       :::::::::.:::::        ::...:.::::.:   ::  :: . .     :.:: :
NP_073 MSSYFVNPLFSKYKA--------GESLEPAYYDCRFPQSVGRSHALVYGP----GGSAPG
               10                20        30        40            

               70        80        90        100       110         
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPG-GGSPAAAYQAAPPPPPHPPPPP
       : ::     .: :                 :..:: : .:   ..::  :          
NP_073 FQHA-----SH-HV----------------QDFFHHGTSGISNSGYQQNP----------
       50                              60        70                

     120       130       140       150       160        170        
pF1KB8 PPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSG-NIGEDPDHLNQ
           :. ..:::. .:::::. : :: .. .:::: .:::::::::.. : .:   ::::
NP_073 ----CS-LSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTNSSEGQGHLNQ
              80        90       100       110       120       130 

      180       190       200       210       220       230        
pF1KB8 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE
       .:::: :::::::.: :::: :::::::.:::::::::::::::::::::::::::.:::
NP_073 NSSPSLMFPWMRPHA-PGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTE
             140        150       160       170       180       190

      240       250       260       270       280       290
pF1KB8 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
       ::::::::::::::::::::::.: .:.: :  :  .: .: ::.. :    
NP_073 RQVKIWFQNRRMKWKKENNKDKLPGARDEEKVEEEGNEEEEKEEEEKEENKD
              200       210       220       230       240  

>>XP_005257343 (OMIM: 142963) PREDICTED: homeobox protei  (242 aa)
 initn: 918 init1: 491 opt: 777  Z-score: 384.4  bits: 78.8 E(85289): 1.1e-14
Smith-Waterman score: 867; 52.1% identity (68.8% similar) in 288 aa overlap (1-287:1-234)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       ::::::: :.::::.        ::.. :.:::: :: ..::: ..      .:: :..:
XP_005 MSSYFVNSLFSKYKT--------GESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG
               10                20        30              40      

               70        80        90       100       110       120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
                .  :::             . ::..:  ..  .: ::  :           
XP_005 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP-----------
                  50                     60        70              

              130       140       150       160        170         
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS
          :. .::::.:..::::: :::: .: .: . .:::: ::: ......::. .  .::
XP_005 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS
                80        90       100        110       120        

     180       190       200       210       220       230         
pF1KB8 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER
        ::.:.::::::::: :::::::::::.:::::::::::::::::::::::::::.::::
XP_005 PSPTQLFPWMRPQAA-GRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER
      130       140        150       160       170       180       

     240       250       260       270       280       290     
pF1KB8 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN     
       ::::::::::::::::::::::: :. : .. : :.. ..  :   ::        
XP_005 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-KQKLERAPEAADEGDAQKGDKK
       190       200       210       220        230       240  

>>NP_001186676 (OMIM: 142985) homeobox protein Hox-D8 is  (106 aa)
 initn: 717 init1: 717 opt: 717  Z-score: 361.1  bits: 73.3 E(85289): 2.3e-13
Smith-Waterman score: 717; 100.0% identity (100.0% similar) in 106 aa overlap (185-290:1-106)

          160       170       180       190       200       210    
pF1KB8 ELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEK
                                     ::::::::::::::::::::::::::::::
NP_001                               MFPWMRPQAAPGRRRGRQTYSRFQTLELEK
                                             10        20        30

          220       230       240       250       260       270    
pF1KB8 EFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETK
               40        50        60        70        80        90

          280       290
pF1KB8 KEAQELEEDRAEGLTN
       ::::::::::::::::
NP_001 KEAQELEEDRAEGLTN
              100      

>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo  (251 aa)
 initn: 366 init1: 366 opt: 414  Z-score: 218.6  bits: 48.2 E(85289): 2e-05
Smith-Waterman score: 460; 38.7% identity (58.7% similar) in 230 aa overlap (61-271:17-231)

               40        50        60        70        80        90
pF1KB8 YYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRG
                                     ::     ...   ::    :   ::.  : 
NP_076               MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQ--RR
                             10        20        30        40      

                100               110       120       130       140
pF1KB8 QEYFHP--GGGSPAAA----YQA----APPPPPHPPPPPPPPPCGGIACHGEPAKFYGYD
       .  :.:  : :  ::     : :    .::::: :::::::::  :.. ..      :  
NP_076 ESSFQPEAGFGRRAACTVQRYAACRDPGPPPPPPPPPPPPPPP--GLSPRAPAPPPAG--
           50        60        70        80          90       100  

              150       160       170       180       190          
pF1KB8 NLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMR--------PQ
        :  .:    .  .     : :  ... .  .:.: .  . :  ..::::        :.
NP_076 ALLPEPGQRCEAVSSSPPPPPC--AQNPLHPSPSH-SACKEPV-VYPWMRKVHVSTVNPN
              110       120         130        140        150      

             200       210       220       230       240       250 
pF1KB8 AAPGR-RRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMK
        : :. .:.: .:.: :.::::::: .: ::::.::.:..::: :.:::.::::::::::
NP_076 YAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMK
        160       170       180       190       200       210      

             260       270       280       290 
pF1KB8 WKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN 
       :::..   :.: ..  ...:                    
NP_076 WKKDH---KLPNTK--IRSGGAAGSAGGPPGRPNGGPRAL
        220            230       240       250 

>>NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [Homo  (230 aa)
 initn: 428 init1: 339 opt: 411  Z-score: 217.6  bits: 47.9 E(85289): 2.2e-05
Smith-Waterman score: 419; 41.6% identity (63.7% similar) in 190 aa overlap (97-286:39-217)

         70        80        90       100       110       120      
pF1KB8 QAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGG
                                     : :. :.:. .. :   .   :    : . 
NP_008 ALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPLYQSPFA-
       10        20        30        40        50        60        

        130       140       150       160       170       180      
pF1KB8 IACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMF
        . .:  :  ::  ::   :  . .:.   .     :..  .  :   : . . .  ...
NP_008 -SGYGLGADAYG--NL---PCASYDQNIPGLCSDLAKGACDKTDEGALH-GAAEANFRIY
         70          80           90       100       110        120

        190       200       210       220       230       240      
pF1KB8 PWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQ
       :::: ...: :.::::::.:.::::::::: :: ::::.::::..::: :::::.:::::
NP_008 PWMR-SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ
               130       140       150       160       170         

        250       260       270       280       290         
pF1KB8 NRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN         
       :::::::::. ::. :..   . .: . . :     :.:.             
NP_008 NRRMKWKKEH-KDEGPTA-AAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
     180        190        200       210       220       230

>>NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [Homo  (217 aa)
 initn: 427 init1: 345 opt: 406  Z-score: 215.6  bits: 47.4 E(85289): 2.8e-05
Smith-Waterman score: 436; 40.0% identity (61.3% similar) in 230 aa overlap (58-283:22-217)

        30        40        50        60         70        80      
pF1KB8 NPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG-FPHAPPQAHAHPHPSPPPSGTGCGGR
                                     :.: ::.    : :  .:. :  :.: :. 
NP_004          MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFAS-NPQRPGYGAGSGAS
                        10        20        30         40        50

         90       100       110       120       130          140   
pF1KB8 EGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHG---EPAKFYGYDNLQ
        . ... ..::::. :.  :.:                .:.   :   ::..:    :..
NP_004 FAASMQGLYPGGGGMAG--QSA----------------AGVYAAGYGLEPSSF----NMH
               60          70                        80            

           150       160       170       180       190       200   
pF1KB8 RQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQT
         :.   .:.   :   :  ...:   :. :    . :  ...:::: ...  :.:::::
NP_004 CAPF---EQNLSGVCPGDSAKAAGA-KEQRDSDLAAESNFRIYPWMR-SSGTDRKRGRQT
       90          100       110        120       130        140   

           210       220       230       240       250       260   
pF1KB8 YSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPV
       :.:.::::::::: .: ::::.::::..:.: :::::.::::::::::::::: :   : 
NP_004 YTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKEN-KTAGPG
           150       160       170       180       190        200  

           270       280       290
pF1KB8 SRQEVKDGETKKEAQELEEDRAEGLTN
       .      :. . ::.: ::.       
NP_004 TT-----GQDRAEAEEEEEE       
                 210              




290 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:35:45 2016 done: Fri Nov  4 16:35:46 2016
 Total Scan time:  9.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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