Result of FASTA (ccds) for pF1KB8938
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8938, 290 aa
  1>>>pF1KB8938 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9088+/-0.000997; mu= 0.1460+/- 0.061
 mean_var=457.7721+/-92.865, 0's: 0 Z-trim(117.6): 80  B-trim: 0 in 0/54
 Lambda= 0.059945
 statistics sampled from 18327 (18404) to 18327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.565), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS2268.1 HOXD8 gene_id:3234|Hs108|chr2           ( 290) 2069 192.1 4.1e-49
CCDS56148.1 HOXD8 gene_id:3234|Hs108|chr2          ( 289) 2052 190.6 1.1e-48
CCDS11533.1 HOXB8 gene_id:3218|Hs108|chr17         ( 243)  788 81.2 8.3e-16
CCDS8870.1 HOXC8 gene_id:3224|Hs108|chr12          ( 242)  784 80.8 1.1e-15
CCDS56149.1 HOXD8 gene_id:3234|Hs108|chr2          ( 106)  717 74.6 3.6e-14


>>CCDS2268.1 HOXD8 gene_id:3234|Hs108|chr2                (290 aa)
 initn: 2069 init1: 2069 opt: 2069  Z-score: 995.1  bits: 192.1 E(32554): 4.1e-49
Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB8 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
              250       260       270       280       290

>>CCDS56148.1 HOXD8 gene_id:3234|Hs108|chr2               (289 aa)
 initn: 1436 init1: 1436 opt: 2052  Z-score: 987.2  bits: 190.6 E(32554): 1.1e-48
Smith-Waterman score: 2052; 99.7% identity (99.7% similar) in 290 aa overlap (1-290:1-289)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SPSQMFPWMRPQA-PGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
              190        200       210       220       230         

              250       260       270       280       290
pF1KB8 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
     240       250       260       270       280         

>>CCDS11533.1 HOXB8 gene_id:3218|Hs108|chr17              (243 aa)
 initn: 941 init1: 699 opt: 788  Z-score: 397.2  bits: 81.2 E(32554): 8.3e-16
Smith-Waterman score: 878; 52.1% identity (68.8% similar) in 288 aa overlap (1-287:1-235)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       ::::::: :.::::.        ::.. :.:::: :: ..::: ..      .:: :..:
CCDS11 MSSYFVNSLFSKYKT--------GESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG
               10                20        30              40      

               70        80        90       100       110       120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
                .  :::             . ::..:  ..  .: ::  :           
CCDS11 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP-----------
                  50                     60        70              

              130       140       150       160        170         
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS
          :. .::::.:..::::: :::: .: .: . .:::: ::: ......::. .  .::
CCDS11 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS
                80        90       100        110       120        

     180       190       200       210       220       230         
pF1KB8 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER
        ::.:.::::::::: :::::::::::.:::::::::::::::::::::::::::.::::
CCDS11 PSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER
      130       140       150       160       170       180        

     240       250       260       270       280       290     
pF1KB8 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN     
       ::::::::::::::::::::::: :. : .. : :.. ..  :   ::        
CCDS11 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-KQKLERAPEAADEGDAQKGDKK
      190       200       210       220        230       240   

>>CCDS8870.1 HOXC8 gene_id:3224|Hs108|chr12               (242 aa)
 initn: 885 init1: 646 opt: 784  Z-score: 395.4  bits: 80.8 E(32554): 1.1e-15
Smith-Waterman score: 917; 55.2% identity (68.8% similar) in 288 aa overlap (1-286:1-238)

               10        20        30        40        50        60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
       :::::::::.:::::        ::...:.::::.:   ::  :: . .     :.:: :
CCDS88 MSSYFVNPLFSKYKA--------GESLEPAYYDCRFPQSVGRSHALVYGP----GGSAPG
               10                20        30        40            

               70        80        90        100       110         
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPG-GGSPAAAYQAAPPPPPHPPPPP
       : ::     .: :                 :..:: : .:   ..::  :          
CCDS88 FQHA-----SH-HV----------------QDFFHHGTSGISNSGYQQNP----------
       50                              60        70                

     120       130       140       150       160        170        
pF1KB8 PPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSG-NIGEDPDHLNQ
           :. ..:::. .:::::. : :: .. .:::: .:::::::::.. : .:   ::::
CCDS88 ----CS-LSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTNSSEGQGHLNQ
              80        90       100       110       120       130 

      180       190       200       210       220       230        
pF1KB8 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE
       .:::: :::::::.: :::: :::::::.:::::::::::::::::::::::::::.:::
CCDS88 NSSPSLMFPWMRPHA-PGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTE
             140        150       160       170       180       190

      240       250       260       270       280       290
pF1KB8 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
       ::::::::::::::::::::::.: .:.: :  :  .: .: ::.. :    
CCDS88 RQVKIWFQNRRMKWKKENNKDKLPGARDEEKVEEEGNEEEEKEEEEKEENKD
              200       210       220       230       240  

>>CCDS56149.1 HOXD8 gene_id:3234|Hs108|chr2               (106 aa)
 initn: 717 init1: 717 opt: 717  Z-score: 367.9  bits: 74.6 E(32554): 3.6e-14
Smith-Waterman score: 717; 100.0% identity (100.0% similar) in 106 aa overlap (185-290:1-106)

          160       170       180       190       200       210    
pF1KB8 ELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEK
                                     ::::::::::::::::::::::::::::::
CCDS56                               MFPWMRPQAAPGRRRGRQTYSRFQTLELEK
                                             10        20        30

          220       230       240       250       260       270    
pF1KB8 EFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETK
               40        50        60        70        80        90

          280       290
pF1KB8 KEAQELEEDRAEGLTN
       ::::::::::::::::
CCDS56 KEAQELEEDRAEGLTN
              100      




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:35:44 2016 done: Fri Nov  4 16:35:44 2016
 Total Scan time:  3.020 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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