Result of FASTA (omim) for pF1KB8935
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8935, 284 aa
  1>>>pF1KB8935 284 - 284 aa - 284 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0102+/-0.000362; mu= 8.3193+/- 0.023
 mean_var=117.4477+/-25.384, 0's: 0 Z-trim(115.8): 40  B-trim: 1411 in 1/56
 Lambda= 0.118346
 statistics sampled from 26438 (26478) to 26438 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.31), width:  16
 Scan time:  6.270

The best scores are:                                      opt bits E(85289)
NP_958845 (OMIM: 601425) transcription elongation  ( 280) 1739 307.5 1.8e-83
NP_006747 (OMIM: 601425) transcription elongation  ( 301) 1731 306.2 4.9e-83
XP_011515880 (OMIM: 601425) PREDICTED: transcripti ( 266) 1709 302.4 5.9e-82
XP_006716530 (OMIM: 601425) PREDICTED: transcripti ( 254) 1639 290.4 2.3e-78
XP_016883525 (OMIM: 604784) PREDICTED: transcripti ( 272) 1148 206.6 4.1e-53
NP_942016 (OMIM: 604784) transcription elongation  ( 272) 1148 206.6 4.1e-53
XP_016883526 (OMIM: 604784) PREDICTED: transcripti ( 272) 1148 206.6 4.1e-53
NP_003186 (OMIM: 604784) transcription elongation  ( 299) 1148 206.7 4.5e-53
XP_011527329 (OMIM: 604784) PREDICTED: transcripti ( 297) 1127 203.1 5.3e-52
XP_011527324 (OMIM: 604784) PREDICTED: transcripti ( 297) 1127 203.1 5.3e-52
XP_011527325 (OMIM: 604784) PREDICTED: transcripti ( 297) 1127 203.1 5.3e-52
XP_005260286 (OMIM: 604784) PREDICTED: transcripti ( 324) 1127 203.1 5.7e-52
NP_003187 (OMIM: 604128) transcription elongation  ( 348)  843 154.6 2.4e-37
XP_016857693 (OMIM: 604128) PREDICTED: transcripti ( 327)  836 153.4 5.2e-37
XP_006710927 (OMIM: 604128) PREDICTED: transcripti ( 351)  822 151.0 2.9e-36
XP_011540355 (OMIM: 604128) PREDICTED: transcripti ( 364)  822 151.0   3e-36
XP_016857692 (OMIM: 604128) PREDICTED: transcripti ( 450)  822 151.1 3.6e-36
XP_016857690 (OMIM: 604128) PREDICTED: transcripti ( 466)  822 151.1 3.7e-36
XP_016857689 (OMIM: 604128) PREDICTED: transcripti ( 487)  822 151.1 3.8e-36
XP_016857691 (OMIM: 604128) PREDICTED: transcripti ( 466)  815 149.9 8.4e-36
XP_016866115 (OMIM: 607789) PREDICTED: PHD finger  (1308)  238 51.6   9e-06
XP_005248760 (OMIM: 607789) PREDICTED: PHD finger  (1308)  238 51.6   9e-06
XP_005248759 (OMIM: 607789) PREDICTED: PHD finger  (1951)  238 51.7 1.3e-05
NP_001277188 (OMIM: 607789) PHD finger protein 3 i (1951)  238 51.7 1.3e-05
XP_005248758 (OMIM: 607789) PREDICTED: PHD finger  (2039)  238 51.8 1.3e-05
NP_055968 (OMIM: 607789) PHD finger protein 3 isof (2039)  238 51.8 1.3e-05
XP_006715489 (OMIM: 607789) PREDICTED: PHD finger  (2039)  238 51.8 1.3e-05
XP_011533950 (OMIM: 607789) PREDICTED: PHD finger  (2048)  238 51.8 1.3e-05


>>NP_958845 (OMIM: 601425) transcription elongation fact  (280 aa)
 initn: 1752 init1: 1669 opt: 1739  Z-score: 1619.6  bits: 307.5 E(85289): 1.8e-83
Smith-Waterman score: 1739; 95.4% identity (96.8% similar) in 284 aa overlap (1-284:1-280)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
       :::::::::::::::    . .   :::::::::::::::::::::::::::::::::::
NP_958 MEDEVVRFAKKMDKM----VQKKNASTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
               10            20        30        40        50      

               70        80        90       100       110       120
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KB8 DSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
        120       130       140       150       160       170      

              190       200       210       220       230       240
pF1KB8 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQ
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_958 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQ
        180       190       200       210       220       230      

              250       260       270       280    
pF1KB8 TDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
       :::::::::::::::::::::::::::.::::::::::::::::
NP_958 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
        240       250       260       270       280

>>NP_006747 (OMIM: 601425) transcription elongation fact  (301 aa)
 initn: 1814 init1: 1731 opt: 1731  Z-score: 1611.8  bits: 306.2 E(85289): 4.9e-83
Smith-Waterman score: 1784; 93.4% identity (94.0% similar) in 301 aa overlap (1-284:1-301)

               10                         20        30        40   
pF1KB8 MEDEVVRFAKKMDKM-----------------NIPMTLELLQSTRIGMSVNAIRKQSTDE
       :::::::::::::::                 ::::::::::::::::::::::::::::
NP_006 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KB8 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB8 NARDTYVSSFPRAPSTSDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
NP_006 NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KB8 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_006 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
              190       200       210       220       230       240

           230       240       250       260       270       280   
pF1KB8 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKF
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_006 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
              250       260       270       280       290       300

        
pF1KB8 C
       :
NP_006 C
        

>>XP_011515880 (OMIM: 601425) PREDICTED: transcription e  (266 aa)
 initn: 1709 init1: 1709 opt: 1709  Z-score: 1592.3  bits: 302.4 E(85289): 5.9e-82
Smith-Waterman score: 1709; 98.9% identity (99.6% similar) in 266 aa overlap (19-284:1-266)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                         ::::::::::::::::::::::::::::::::::::::::::
XP_011                   MTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
             50        60        70        80        90       100  

              130       140       150       160       170       180
pF1KB8 DSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KB8 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQ
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_011 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQ
            170       180       190       200       210       220  

              250       260       270       280    
pF1KB8 TDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
       :::::::::::::::::::::::::::.::::::::::::::::
XP_011 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
            230       240       250       260      

>>XP_006716530 (OMIM: 601425) PREDICTED: transcription e  (254 aa)
 initn: 1639 init1: 1639 opt: 1639  Z-score: 1528.0  bits: 290.4 E(85289): 2.3e-78
Smith-Waterman score: 1639; 98.8% identity (99.6% similar) in 254 aa overlap (31-284:1-254)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                                     ::::::::::::::::::::::::::::::
XP_006                               MSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                                             10        20        30

               70        80        90       100       110       120
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
               40        50        60        70        80        90

              130       140       150       160       170       180
pF1KB8 DSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
              100       110       120       130       140       150

              190       200       210       220       230       240
pF1KB8 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQ
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_006 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQ
              160       170       180       190       200       210

              250       260       270       280    
pF1KB8 TDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
       :::::::::::::::::::::::::::.::::::::::::::::
XP_006 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
              220       230       240       250    

>>XP_016883525 (OMIM: 604784) PREDICTED: transcription e  (272 aa)
 initn: 1135 init1: 918 opt: 1148  Z-score: 1074.5  bits: 206.6 E(85289): 4.1e-53
Smith-Waterman score: 1148; 66.5% identity (83.3% similar) in 269 aa overlap (17-284:10-272)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                       .:.::.::::::.::::::.::::.:::: .:::::::::::::
XP_016        MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
                      10        20        30        40        50   

               70        80        90       100        110         
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
       :. :  :  .. .  :  ::     .:. : .     .: .   : .:  ...:: .: :
XP_016 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
             60        70             80        90       100       

     120       130       140       150       160       170         
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
        :.:. ::::::.:::.:  :..::::: :.:..:::: :.... :::::::::::::::
XP_016 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
       110       120       130       140       150       160       

     180       190       200       210       220       230         
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
       ::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
XP_016 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
       170       180       190       200       210       220       

     240       250       260       270       280    
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
       ::::::::::.:::::::::::::.:::.::::::::::::::::
XP_016 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
       230       240       250       260       270  

>>NP_942016 (OMIM: 604784) transcription elongation fact  (272 aa)
 initn: 1135 init1: 918 opt: 1148  Z-score: 1074.5  bits: 206.6 E(85289): 4.1e-53
Smith-Waterman score: 1148; 66.5% identity (83.3% similar) in 269 aa overlap (17-284:10-272)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                       .:.::.::::::.::::::.::::.:::: .:::::::::::::
NP_942        MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
                      10        20        30        40        50   

               70        80        90       100        110         
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
       :. :  :  .. .  :  ::     .:. : .     .: .   : .:  ...:: .: :
NP_942 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
             60        70             80        90       100       

     120       130       140       150       160       170         
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
        :.:. ::::::.:::.:  :..::::: :.:..:::: :.... :::::::::::::::
NP_942 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
       110       120       130       140       150       160       

     180       190       200       210       220       230         
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
       ::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
NP_942 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
       170       180       190       200       210       220       

     240       250       260       270       280    
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
       ::::::::::.:::::::::::::.:::.::::::::::::::::
NP_942 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
       230       240       250       260       270  

>>XP_016883526 (OMIM: 604784) PREDICTED: transcription e  (272 aa)
 initn: 1135 init1: 918 opt: 1148  Z-score: 1074.5  bits: 206.6 E(85289): 4.1e-53
Smith-Waterman score: 1148; 66.5% identity (83.3% similar) in 269 aa overlap (17-284:10-272)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                       .:.::.::::::.::::::.::::.:::: .:::::::::::::
XP_016        MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
                      10        20        30        40        50   

               70        80        90       100        110         
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
       :. :  :  .. .  :  ::     .:. : .     .: .   : .:  ...:: .: :
XP_016 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
             60        70             80        90       100       

     120       130       140       150       160       170         
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
        :.:. ::::::.:::.:  :..::::: :.:..:::: :.... :::::::::::::::
XP_016 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
       110       120       130       140       150       160       

     180       190       200       210       220       230         
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
       ::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
XP_016 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
       170       180       190       200       210       220       

     240       250       260       270       280    
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
       ::::::::::.:::::::::::::.:::.::::::::::::::::
XP_016 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
       230       240       250       260       270  

>>NP_003186 (OMIM: 604784) transcription elongation fact  (299 aa)
 initn: 1135 init1: 918 opt: 1148  Z-score: 1073.9  bits: 206.7 E(85289): 4.5e-53
Smith-Waterman score: 1163; 61.8% identity (79.1% similar) in 301 aa overlap (2-284:5-299)

                  10                         20        30        40
pF1KB8    MEDEVVRFAKKMDKM-----------------NIPMTLELLQSTRIGMSVNAIRKQS
           :.:..:.:...:::                  .:.::.::::::.::::::.::::
NP_003 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
               10        20        30        40        50        60

               50        60        70        80        90       100
pF1KB8 TDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRK
       .:::: .::::::::::::::. :  :  .. .  :  ::     .:. : .     .: 
NP_003 SDEEVIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRP
               70        80         90            100       110    

               110       120       130       140       150         
pF1KB8 DETNARDT-YVSSFPRAPSTSDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAI
       .   : .:  ...:: .: : :.:. ::::::.:::.:  :..::::: :.:..:::: :
NP_003 ELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECI
          120       130       140       150       160       170    

     160       170       180       190       200       210         
pF1KB8 YQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEM
       .... :::::::::::::::::::::::.::.::::: : :. .: ::.::::::::::.
NP_003 FRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEI
          180       190       200       210       220       230    

     220       230       240       250       260       270         
pF1KB8 WKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGN
        : .:::::::::::.::::::::::::::.:::::::::::::.:::.:::::::::::
NP_003 RKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGN
          240       250       260       270       280       290    

     280    
pF1KB8 RWKFC
       :::::
NP_003 RWKFC
            

>>XP_011527329 (OMIM: 604784) PREDICTED: transcription e  (297 aa)
 initn: 1114 init1: 897 opt: 1127  Z-score: 1054.5  bits: 203.1 E(85289): 5.3e-52
Smith-Waterman score: 1127; 66.3% identity (83.1% similar) in 267 aa overlap (17-282:10-270)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                       .:.::.::::::.::::::.::::.:::: .:::::::::::::
XP_011        MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
                      10        20        30        40        50   

               70        80        90       100        110         
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
       :. :  :  .. .  :  ::     .:. : .     .: .   : .:  ...:: .: :
XP_011 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
             60        70             80        90       100       

     120       130       140       150       160       170         
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
        :.:. ::::::.:::.:  :..::::: :.:..:::: :.... :::::::::::::::
XP_011 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
       110       120       130       140       150       160       

     180       190       200       210       220       230         
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
       ::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
XP_011 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
       170       180       190       200       210       220       

     240       250       260       270       280                   
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC               
       ::::::::::.:::::::::::::.:::.::::::::::::::                 
XP_011 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKVGEQAQAAPPSSILWRW
       230       240       250       260       270       280       

XP_011 GVSASVGSVV
       290       

>>XP_011527324 (OMIM: 604784) PREDICTED: transcription e  (297 aa)
 initn: 1114 init1: 897 opt: 1127  Z-score: 1054.5  bits: 203.1 E(85289): 5.3e-52
Smith-Waterman score: 1127; 66.3% identity (83.1% similar) in 267 aa overlap (17-282:10-270)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                       .:.::.::::::.::::::.::::.:::: .:::::::::::::
XP_011        MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
                      10        20        30        40        50   

               70        80        90       100        110         
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
       :. :  :  .. .  :  ::     .:. : .     .: .   : .:  ...:: .: :
XP_011 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
             60        70             80        90       100       

     120       130       140       150       160       170         
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
        :.:. ::::::.:::.:  :..::::: :.:..:::: :.... :::::::::::::::
XP_011 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
       110       120       130       140       150       160       

     180       190       200       210       220       230         
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
       ::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
XP_011 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
       170       180       190       200       210       220       

     240       250       260       270       280                   
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC               
       ::::::::::.:::::::::::::.:::.::::::::::::::                 
XP_011 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKVGEQAQAAPPSSILWRW
       230       240       250       260       270       280       

XP_011 GVSASVGSVV
       290       




284 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:35:05 2016 done: Fri Nov  4 16:35:06 2016
 Total Scan time:  6.270 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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