Result of FASTA (ccds) for pF1KB8935
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8935, 284 aa
  1>>>pF1KB8935 284 - 284 aa - 284 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8766+/-0.000944; mu= 3.6884+/- 0.057
 mean_var=124.1766+/-26.969, 0's: 0 Z-trim(108.4): 16  B-trim: 611 in 1/52
 Lambda= 0.115094
 statistics sampled from 10199 (10215) to 10199 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.314), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS47857.1 TCEA1 gene_id:6917|Hs108|chr8          ( 280) 1739 299.6 1.7e-81
CCDS47858.1 TCEA1 gene_id:6917|Hs108|chr8          ( 301) 1731 298.2 4.6e-81
CCDS13554.1 TCEA2 gene_id:6919|Hs108|chr20         ( 272) 1148 201.4 5.9e-52
CCDS13553.1 TCEA2 gene_id:6919|Hs108|chr20         ( 299) 1148 201.4 6.4e-52
CCDS44086.1 TCEA3 gene_id:6920|Hs108|chr1          ( 348)  843 150.8 1.3e-36


>>CCDS47857.1 TCEA1 gene_id:6917|Hs108|chr8               (280 aa)
 initn: 1752 init1: 1669 opt: 1739  Z-score: 1576.5  bits: 299.6 E(32554): 1.7e-81
Smith-Waterman score: 1739; 95.4% identity (96.8% similar) in 284 aa overlap (1-284:1-280)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
       :::::::::::::::    . .   :::::::::::::::::::::::::::::::::::
CCDS47 MEDEVVRFAKKMDKM----VQKKNASTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
               10            20        30        40        50      

               70        80        90       100       110       120
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KB8 DSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
        120       130       140       150       160       170      

              190       200       210       220       230       240
pF1KB8 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQ
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS47 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQ
        180       190       200       210       220       230      

              250       260       270       280    
pF1KB8 TDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
       :::::::::::::::::::::::::::.::::::::::::::::
CCDS47 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
        240       250       260       270       280

>>CCDS47858.1 TCEA1 gene_id:6917|Hs108|chr8               (301 aa)
 initn: 1814 init1: 1731 opt: 1731  Z-score: 1568.8  bits: 298.2 E(32554): 4.6e-81
Smith-Waterman score: 1784; 93.4% identity (94.0% similar) in 301 aa overlap (1-284:1-301)

               10                         20        30        40   
pF1KB8 MEDEVVRFAKKMDKM-----------------NIPMTLELLQSTRIGMSVNAIRKQSTDE
       :::::::::::::::                 ::::::::::::::::::::::::::::
CCDS47 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KB8 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB8 NARDTYVSSFPRAPSTSDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS47 NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KB8 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS47 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
              190       200       210       220       230       240

           230       240       250       260       270       280   
pF1KB8 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKF
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS47 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
              250       260       270       280       290       300

        
pF1KB8 C
       :
CCDS47 C
        

>>CCDS13554.1 TCEA2 gene_id:6919|Hs108|chr20              (272 aa)
 initn: 1135 init1: 918 opt: 1148  Z-score: 1046.3  bits: 201.4 E(32554): 5.9e-52
Smith-Waterman score: 1148; 66.5% identity (83.3% similar) in 269 aa overlap (17-284:10-272)

               10        20        30        40        50        60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
                       .:.::.::::::.::::::.::::.:::: .:::::::::::::
CCDS13        MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
                      10        20        30        40        50   

               70        80        90       100        110         
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
       :. :  :  .. .  :  ::     .:. : .     .: .   : .:  ...:: .: :
CCDS13 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
             60        70             80        90       100       

     120       130       140       150       160       170         
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
        :.:. ::::::.:::.:  :..::::: :.:..:::: :.... :::::::::::::::
CCDS13 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
       110       120       130       140       150       160       

     180       190       200       210       220       230         
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
       ::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
CCDS13 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
       170       180       190       200       210       220       

     240       250       260       270       280    
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
       ::::::::::.:::::::::::::.:::.::::::::::::::::
CCDS13 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
       230       240       250       260       270  

>>CCDS13553.1 TCEA2 gene_id:6919|Hs108|chr20              (299 aa)
 initn: 1135 init1: 918 opt: 1148  Z-score: 1045.6  bits: 201.4 E(32554): 6.4e-52
Smith-Waterman score: 1163; 61.8% identity (79.1% similar) in 301 aa overlap (2-284:5-299)

                  10                         20        30        40
pF1KB8    MEDEVVRFAKKMDKM-----------------NIPMTLELLQSTRIGMSVNAIRKQS
           :.:..:.:...:::                  .:.::.::::::.::::::.::::
CCDS13 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
               10        20        30        40        50        60

               50        60        70        80        90       100
pF1KB8 TDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRK
       .:::: .::::::::::::::. :  :  .. .  :  ::     .:. : .     .: 
CCDS13 SDEEVIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRP
               70        80         90            100       110    

               110       120       130       140       150         
pF1KB8 DETNARDT-YVSSFPRAPSTSDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAI
       .   : .:  ...:: .: : :.:. ::::::.:::.:  :..::::: :.:..:::: :
CCDS13 ELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECI
          120       130       140       150       160       170    

     160       170       180       190       200       210         
pF1KB8 YQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEM
       .... :::::::::::::::::::::::.::.::::: : :. .: ::.::::::::::.
CCDS13 FRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEI
          180       190       200       210       220       230    

     220       230       240       250       260       270         
pF1KB8 WKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGN
        : .:::::::::::.::::::::::::::.:::::::::::::.:::.:::::::::::
CCDS13 RKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGN
          240       250       260       270       280       290    

     280    
pF1KB8 RWKFC
       :::::
CCDS13 RWKFC
            

>>CCDS44086.1 TCEA3 gene_id:6920|Hs108|chr1               (348 aa)
 initn: 1045 init1: 809 opt: 843  Z-score: 770.9  bits: 150.8 E(32554): 1.3e-36
Smith-Waterman score: 967; 52.9% identity (74.4% similar) in 312 aa overlap (19-284:38-348)

                           10        20        30        40        
pF1KB8             MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSL
                                     :...:::.::::..::..::. .:.::.::
CCDS44 LRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSL
        10        20        30        40        50        60       

       50        60           70           80                      
pF1KB8 AKSLIKSWKKLLDGPST---EKDLDE---KKKEPAITSQN-SPEA--------REE----
       :: :::.::.:::.:.    ::  ..   :::: ..  .. .:::        ::.    
CCDS44 AKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTR
        70        80        90       100       110       120       

           90       100          110                          120  
pF1KB8 -----STSSGNVSNRK---DETNARDTYVSSFPRAPS-------------------TSDS
            : ::.. : ..   ...:.  . . : :..::                   :.::
CCDS44 RDSVDSKSSASSSPKRPSVERSNSSKSKAES-PKTPSSPLTPTFASSMCLLAPCYLTGDS
       130       140       150        160       170       180      

            130       140       150       160       170       180  
pF1KB8 VQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLK
       :. :: :::.:::.. :::   :.. ....:.::. ::::...:::::.:::::::::::
CCDS44 VRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK
        190       200       210       220       230       240      

            190       200       210       220       230       240  
pF1KB8 DAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQTD
       : .::.::.::: : :   :.:.:::::::::::.:. . .:.:::::::::::::: ::
CCDS44 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTD
        250       260       270       280       290       300      

            250       260       270       280    
pF1KB8 LFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
       :: :.:::::::::.::::::::::.::::.:::::::::::
CCDS44 LFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
        310       320       330       340        




284 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:35:04 2016 done: Fri Nov  4 16:35:04 2016
 Total Scan time:  2.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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