GENSCAN 1.0	Date run:  4-Nov-116	Time: 16:33:51

Sequence gi568815585f:27820139_28024698 : 204560 bp : 44.71% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -   1998   1993    6                               1.05
 1.02 Term -   8491   8462   30  1  0  120   49    36 0.715   0.75
 1.01 Init -   9999   9751  249  0  0   46   59   200 0.806   8.37
 1.00 Prom -  11488  11449   40                              -5.76

 2.00 Prom +  11765  11804   40                              -3.46
 2.01 Init +  13753  13811   59  0  2   75   94    65 0.258   4.69
 2.02 Intr +  20705  20795   91  2  1   96   94    35 0.280   4.90
 2.03 Intr +  25963  26017   55  0  1   69  121    11 0.078   1.05
 2.04 Term +  32557  32624   68  2  2  104   44    84 0.615   3.70
 2.05 PlyA +  34514  34519    6                               1.05

 3.00 Prom +  53062  53101   40                              -4.56
 3.01 Init +  57329  57349   21  1  0   77  101     9 0.085   0.78
 3.02 Intr +  88002  88177  176  2  2   23   81   100 0.007   1.54
 3.03 Term +  88398  88605  208  0  1   56   39   141 0.008   2.81
 3.04 PlyA +  89881  89886    6                               1.05

 4.00 Prom +  99604  99643   40                              -3.66
 4.01 Init + 100001 100406  406  1  1   99  115   462 0.998  46.75
 4.02 Intr + 104118 104447  330  1  0  117   38   547 0.131  48.20
 4.03 Intr + 105775 105904  130  2  1   31   58    97 0.088   0.75
 4.04 Intr + 108887 108944   58  2  1   66  116    21 0.135   1.59
 4.05 Intr + 109969 109987   19  0  1  146   96    12 0.019   3.98
 4.06 Intr + 111874 111901   28  2  1  106   86    -3 0.009  -1.53
 4.07 Term + 125121 125277  157  0  1   79   33   178 0.142   8.81
 4.08 PlyA + 125409 125414    6                               1.05

 5.07 PlyA - 125857 125852    6                               1.05
 5.06 Term - 134171 134038  134  0  2   15   53   174 0.156   4.85
 5.05 Intr - 134483 134346  138  0  0   66   77    95 0.152   6.64
 5.04 Intr - 141262 141133  130  1  1   44   65   137 0.759   7.27
 5.03 Intr - 143231 143067  165  2  0  102   -4    84 0.174   0.76
 5.02 Intr - 144877 144732  146  2  2  134   75   321 0.875  35.40
 5.01 Init - 148868 148328  541  2  1   96  121   881 0.966  87.24
 5.00 Prom - 150083 150044   40                              -7.66

 6.00 Prom + 153054 153093   40                              -9.36
 6.01 Sngl + 155639 156010  372  1  0   82   43   195 0.592   8.66
 6.02 PlyA + 156057 156062    6                               1.05

 7.05 PlyA - 156717 156712    6                               1.05
 7.04 Term - 158314 157968  347  2  2  106   37   732 0.997  64.56
 7.03 Intr - 159161 159067   95  1  2   61   56    28 0.195  -3.49
 7.02 Intr - 160511 160331  181  0  1   92   80    51 0.143   3.63
 7.01 Init - 168499 168325  175  1  1   54  110   162 0.808  14.51
 7.00 Prom - 171403 171364   40                              -5.86

 8.06 PlyA - 172759 172754    6                               1.05
 8.05 Term - 180496 180451   46  0  1  134   44    90 0.750   5.88
 8.04 Intr - 195118 195019  100  2  1   79  101    83 0.950   7.87
 8.03 Intr - 195563 195452  112  2  1   94  111    74 0.997  10.25
 8.02 Intr - 198451 198329  123  1  0   77   54   140 0.969  10.28
 8.01 Intr - 203339 203212  128  0  2   60   76   105 0.934   6.90

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 104118 104563  446  1  2  117   54   589 0.865  53.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585f:27820139_28024698|GENSCAN_predicted_peptide_1|92_aa
MAPSAVSPPQAPRRPLLGPWGLRAAGITETHIPVASSLSLCSEERQKGILLFPSRFLHLP
SSDKPKNLPSEKTARISRYLGVEGVFQMVQFT

>gi568815585f:27820139_28024698|GENSCAN_predicted_CDS_1|279_bp
atggcgccctctgctgttagtccgccccaggctccgcgccggcctctcctgggtccgtgg
ggcctgcgggctgcggggatcaccgagacccacattcccgtggccagcagcctttcgctc
tgctcagaggagaggcagaagggcatattgctgtttcccagtcgctttttacacctgcct
tcttcggataaacccaaaaatcttccttcagagaagacggcccgtatttcccgttatttg
ggggtggagggagtcttccagatggtgcagttcacctag

>gi568815585f:27820139_28024698|GENSCAN_predicted_peptide_2|90_aa
MRMLVLWLRLLLKVSVGRKRGPSSAAQPLNAGGPQCSVQVLSFLTLHSSWCLNARTAGIW
IQQSKFSEGLRWSLEFAFPRSSKVMLVLLV

>gi568815585f:27820139_28024698|GENSCAN_predicted_CDS_2|273_bp
atgaggatgctggtcctctggctcaggctgctcctcaaggtctcggtggggagaaagagg
ggaccttcctccgcagcccagcctctgaatgctggtggcccccagtgctcggtccaggtc
ctctccttcctcacccttcactcttcttggtgcttgaatgccaggacagcagggatttgg
attcagcagagcaagttttctgaaggtctgcgctggagcctggaatttgcatttccaaga
agctccaaggtgatgctggtgctgctggtctag

>gi568815585f:27820139_28024698|GENSCAN_predicted_peptide_3|134_aa
MQEQLGNHKYPQSNKQTILVNIYKGATVIKFQGVHSSSNQKFTSRDEKYKLGTDWFQVID
GLWKGSWLDPRMRKQRIQRAKLTFSTCDCSDFGVLGEWDGVLEPIPWGYGESAVPLLICW
KRTCFCRAPNDEEL

>gi568815585f:27820139_28024698|GENSCAN_predicted_CDS_3|405_bp
atgcaagaacagttgggtaatcacaaatatccccagtccaataaacaaacgatccttgtg
aatatttacaagggagcaactgttataaagttccagggagtgcacagtagcagcaaccaa
aaattcacaagtagagatgaaaagtacaagctgggcacagactggttccaggtgatagac
ggactgtggaagggaagttggctggatccgaggatgcggaagcagaggatacagagagcc
aagctcacgttttcaacctgcgactgctcggattttggtgttttgggggagtgggacggg
gtcctggaaccaatcccctggggatatggagagtcagccgtacctttgctcatctgttgg
aaaagaacgtgtttctgcagggcaccaaatgacgaagaactataa

>gi568815585f:27820139_28024698|GENSCAN_predicted_peptide_4|375_aa
MNGEEQYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQG
SPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFP
WMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELA
VMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPP
PPPPGGCGRNSCSEVEAVLKTSTVAWCALETNNYSRASMTFTSLEIMKTDRPSWSHKPSI
PLGIFNPKVWFVSEEFSMSLISKSMVAYWRQAGLSYIRYSQICAKVVRDALKTEFKANAK
KTSGNSVKIVKVKKE

>gi568815585f:27820139_28024698|GENSCAN_predicted_CDS_4|1128_bp
atgaacggcgaggagcagtactacgcggccacgcagctttacaaggacccatgcgcgttc
cagcgaggcccggcgccggagttcagcgccagcccccctgcgtgcctgtacatgggccgc
cagcccccgccgccgccgccgcacccgttccctggcgccctgggcgcgctggagcagggc
agccccccggacatctccccgtacgaggtgccccccctcgccgacgaccccgcggtggcg
caccttcaccaccacctcccggctcagctcgcgctcccccacccgcccgccgggcccttc
ccggagggagccgagccgggcgtcctggaggagcccaaccgcgtccagctgcctttccca
tggatgaagtctaccaaagctcacgcgtggaaaggccagtgggcaggcggcgcctacgct
gcggagccggaggagaacaagcggacgcgcacggcctacacgcgcgcacagctgctagag
ctggagaaggagttcctattcaacaagtacatctcacggccgcgccgggtggagctggct
gtcatgttgaacttgaccgagagacacatcaagatctggttccaaaaccgccgcatgaag
tggaaaaaggaggaggacaagaagcgcggcggcgggacagctgtcgggggtggcggggtc
gcggagcctgagcaggactgcgccgtgacctccggcgaggagcttctggcgctgccgccg
ccgccgccccccggaggatgtggacgtaattcctgttccgaggtagaggctgtgctgaag
acaagcacagtggcctggtgcgccttggaaaccaacaactattcacgagccagtatgacc
ttcacatctttagaaattatgaaaacagaccgtccgagctggagccacaagccctccatt
cctcttggaatcttcaaccccaaggtgtggtttgtgtctgaggaattctcaatgagcctg
atttccaaaagcatggtggcctactggagacaggctggactcagctacatccgatactcc
cagatctgtgcaaaagtagtgagagatgcactgaagacagaattcaaagcaaatgccaaa
aagacttctggcaacagcgtaaaaattgtgaaagtaaagaaggaataa

>gi568815585f:27820139_28024698|GENSCAN_predicted_peptide_5|417_aa
MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPDPGEGGLALRFDLPTN
IREPNQRAHGGALRAVGEDEQSRETARAGARGLVSRCSRPRRPVSACCRSLLGLRRCPGF
PGEIRGVSREVARDAKLFKRCAQLRRGGAGNLGRKRRSHSVKKAWSTGLRPVVEDLG

>gi568815585f:27820139_28024698|GENSCAN_predicted_CDS_5|1254_bp
atgtacgtgagctacctcctggacaaggacgtgagcatgtaccctagctccgtgcgccac
tctggcggcctcaacctggcgccgcagaacttcgtcagccccccgcagtacccggactac
ggcggttaccacgtggcggccgcagctgcagcggcagcgaacttggacagcgcgcagtcc
ccggggccatcctggccggcagcgtatggcgccccactccgggaggactggaatggctac
gcgcccggaggcgccgcggccgccgccaacgccgtggctcacggcctcaacggtggctcc
ccggccgcagccatgggctacagcagccccgcagactaccatccgcaccaccacccgcat
caccacccgcaccacccggccgccgcgccttcctgcgcttctgggctgctgcaaacgctc
aaccccggccctcctgggcccgccgccaccgctgccgccgagcagctgtctcccggcggc
cagcggcggaacctgtgcgagtggatgcggaagccggcgcagcagtccctcggcagccaa
gtgaaaaccaggacgaaagacaaatatcgagtggtgtacacggaccaccagcggctggag
ctggagaaggagtttcactacagtcgctacatcaccatccggaggaaagccgagctagcc
gccacgctggggctctctgagaggcaggttaaaatctggtttcagaaccgcagagcaaag
gagaggaaaatcaacaagaagaagttgcagcagcaacagcagcagcagccaccacagccg
cctccgccgccaccacagcctccccagcctcagccaggtcctctgagaagtgtcccagag
cccttgagtccggacccgggcgaggggggcttagcccttcgtttcgatcttcccaccaac
atccgagagcctaatcagcgcgcccacggaggcgccttaagggcagttggggaagatgag
cagagccgggaaacagcaagagcgggcgcccgggggctcgtgtcccgctgctctcgccca
agacggccggtctcggcctgctgccggtccttgctgggtctgcgccgctgcccgggattc
cctggagagattcgcggcgtctcccgagaggtggcgcgcgacgccaagcttttcaaaagg
tgcgcgcaactacggcgcggaggtgcggggaacctgggccgcaagcgccgaagccactcg
gtgaagaaggcctggagcactggccttcgacccgtcgtcgaagacctgggctga

>gi568815585f:27820139_28024698|GENSCAN_predicted_peptide_6|123_aa
MIAAQARVHAAGAPLPPRAHQRPESGKRLCQAKADRNREHVAICRRELPCQAATGDLPAR
ATASAQSSSRRGESEPPAGLVGALPSPASTPRVLRSPLRLLMLRCFGRGAAQPALCPFSS
SSF

>gi568815585f:27820139_28024698|GENSCAN_predicted_CDS_6|372_bp
atgattgccgcgcaagctagggtccacgcggccggggctcctctcccgcctcgggcgcac
cagaggccagaaagcggaaagcggctctgccaggccaaggccgacagaaaccgagagcat
gtcgctatttgccggagagaactgccctgccaggctgccacaggtgacttgcccgcgcga
gccacggcctctgcgcagagctcctcccgaaggggagagtcagagccacccgcgggtttg
gtcggggctcttcccagcccggcgtccacgccccgcgtcctgcgctcgcccttgcggctg
cttatgctcaggtgtttcggaagaggcgccgcgcagccagctctctgtcccttcagctcc
agctccttctaa

>gi568815585f:27820139_28024698|GENSCAN_predicted_peptide_7|265_aa
MDIEKVNSMDLGEFVDVFGNATERCPLIAAAVWSQRPFSDLEDLEKHFFAFIDALAQSAW
ADPPDSMQRWGGKSPDWAGDLAAALKLRTPEEEARKVQPPKTRTFPSSAARAGYRPGPGP
RRLCKDFLQVNAVLWGLWDLQSEKGNKSRAGQEGILRCHPDLAGSELQRGTLTAESQREQ
SGAGLRSLGADERLRLAELNAQYRARFGFPFVLAARFSDRTAVPRELARRLLCPSAQELR
TALGEVKKIGSLRLADLLRADPAKL

>gi568815585f:27820139_28024698|GENSCAN_predicted_CDS_7|798_bp
atggacattgagaaggtcaactccatggaccttggagaattcgtggatgtgtttgggaat
gccactgagagatgtcctctgattgcagctgctgtttggtcccagcggccattctctgat
ttggaagatttagagaagcacttttttgcctttattgatgcccttgcacagtcagcttgg
gctgatcctccagacagcatgcaacggtggggagggaagtcccctgactgggcgggggac
ctagcggctgctctgaaactccgaacacctgaagaggaggcgcggaaggtccagccgccc
aagactcgcactttcccctcctccgcagcccgggcaggttaccgtcctgggcctgggcct
aggagattatgcaaagatttccttcaagtaaacgctgttctctggggcctctgggatcta
cagtcggagaaggggaataagtcccgggccggccaggagggcatcctgcgctgccacccg
gacctggcgggcagcgagctgcagcggggcacgctcacggccgagtcgcagcgggaacag
agcggcgcaggcctgaggagcctgggcgcggacgagcggctgcggctggccgagctcaac
gcgcagtaccgcgcgcgcttcggtttccccttcgtgctcgccgcgcgcttcagcgaccgg
acggcggtgccgcgcgagctggcgcgccggctgctctgcccgtccgcgcaggagctgcgc
actgctctgggcgaggtgaagaagatcggcagcctgcgcctggccgacctcctccgcgca
gaccccgccaagctgtag

>gi568815585f:27820139_28024698|GENSCAN_predicted_peptide_8|169_aa
XEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGK
VVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFS
LGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEMSSPVSEPMSDGFLH

>gi568815585f:27820139_28024698|GENSCAN_predicted_CDS_8|510_bp
natgaaattgaatatgaaaaccaaaaaaggctggaagaagaggaggacttgaatgtgctt
acatttgaagatcttctttgctttgcatatcaagttgccaaaggaatggaatttctggaa
tttaagtcgtgtgttcacagagacctggccgccaggaacgtgcttgtcacccacgggaaa
gtggtgaagatatgtgactttggattggctcgagatatcatgagtgattccaactatgtt
gtcaggggcaatgcccgtctgcctgtaaaatggatggcccccgaaagcctgtttgaaggc
atctacaccattaagagtgatgtctggtcatatggaatattactgtgggaaatcttctca
cttggtgtgaatccttaccctggcattccggttgatgctaacttctacaaactgattcaa
aatggatttaaaatggatcagccattttatgctacagaagaaatgtcttcgccagtttcc
gagcccatgagtgacggcttcctgcactga