Result of FASTA (omim) for pF1KB8919
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8919, 264 aa
  1>>>pF1KB8919 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9281+/-0.000326; mu= 2.7929+/- 0.021
 mean_var=309.7680+/-61.929, 0's: 0 Z-trim(125.7): 184  B-trim: 0 in 0/62
 Lambda= 0.072871
 statistics sampled from 49834 (50067) to 49834 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.587), width:  16
 Scan time:  8.020

The best scores are:                                      opt bits E(85289)
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 1873 209.1 6.9e-54
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 1873 209.1 6.9e-54
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  925 109.4 6.7e-24
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  909 107.7 2.2e-23
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  705 86.4 7.2e-17
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  529 67.8 2.4e-11
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  497 64.4 2.5e-10
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224)  474 61.9 1.2e-09
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  474 61.9 1.2e-09
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  474 61.9 1.2e-09
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288)  474 62.0 1.4e-09
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  458 60.2 3.7e-09
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233)  422 56.5 5.3e-08
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235)  407 54.9 1.6e-07
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230)  400 54.1 2.6e-07
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153)  394 53.3 3.1e-07
XP_005246571 (OMIM: 142981) PREDICTED: homeobox pr ( 146)  382 52.0 7.2e-07
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356)  388 53.1 8.3e-07
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265)  384 52.5 9.1e-07
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217)  376 51.6 1.4e-06
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283)  377 51.8 1.6e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  364 50.7 5.5e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  364 50.7 5.5e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  364 50.7 5.5e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  364 50.7 5.5e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  364 50.7 5.5e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  364 50.7 5.5e-06
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  364 50.7 5.5e-06
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335)  338 47.8   3e-05
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  340 48.2 3.1e-05
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313)  334 47.4 3.9e-05
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  332 47.1 4.4e-05
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  332 47.2 4.9e-05
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  332 47.2 4.9e-05
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301)  330 46.9 5.1e-05
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 47.4 5.2e-05
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 47.4 5.2e-05
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 47.4 5.2e-05
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 47.4 5.2e-05
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 47.4 5.2e-05
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  333 47.4 5.2e-05
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363)  331 47.1 5.3e-05
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488)  332 47.4   6e-05
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 47.6 6.2e-05
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 47.6 6.2e-05
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 47.6 6.2e-05
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 47.6 6.2e-05
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 47.6 6.2e-05
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 47.6 6.2e-05
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 47.6 6.2e-05


>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo  (264 aa)
 initn: 1873 init1: 1873 opt: 1873  Z-score: 1088.5  bits: 209.1 E(85289): 6.9e-54
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
              190       200       210       220       230       240

              250       260    
pF1KB8 GTSEDHSQSATPPEQQRAEDITRL
       ::::::::::::::::::::::::
NP_705 GTSEDHSQSATPPEQQRAEDITRL
              250       260    

>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo  (264 aa)
 initn: 1873 init1: 1873 opt: 1873  Z-score: 1088.5  bits: 209.1 E(85289): 6.9e-54
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
              190       200       210       220       230       240

              250       260    
pF1KB8 GTSEDHSQSATPPEQQRAEDITRL
       ::::::::::::::::::::::::
NP_055 GTSEDHSQSATPPEQQRAEDITRL
              250       260    

>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo  (251 aa)
 initn: 1092 init1: 704 opt: 925  Z-score: 550.1  bits: 109.4 E(85289): 6.7e-24
Smith-Waterman score: 953; 59.9% identity (71.8% similar) in 252 aa overlap (1-231:1-237)

               10        20        30           40                 
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIP-EHSPEYY--GRTRESGFQHHH--------
       : :::.:..:::.::::::::::::..:.: .::: ::  :. :::.:: .         
NP_076 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
               10        20        30        40        50        60

              50        60        70         80        90       100
pF1KB8 --------QELYPPPPPRPSYPERQYSCTSLQGPGNS-RGHGPAQAGHHHPEKSQSLCEP
               ..  ::::: :  :           :: : :. .:  ::   :: .:  :: 
NP_076 TVQRYAACRDPGPPPPPPPPPPPPP-------PPGLSPRAPAPPPAGALLPEPGQR-CE-
               70        80               90       100        110  

              110        120       130       140       150         
pF1KB8 APLSGASASPSPAPPACSQ-PAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS
             ..: :: :: :.: :    :: .: :.:.:::::.:.::::::::: :::::::
NP_076 ------AVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRS
                   120       130       140       150       160     

     160       170       180       190       200       210         
pF1KB8 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN
       :::::::::::::::::::::::::::.::::.:::::::::::::::::::::::.:::
NP_076 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPN
         170       180       190       200       210       220     

     220       230       240       250       260    
pF1KB8 TKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
       ::.::.  ::.:                                 
NP_076 TKIRSGGAAGSAGGPPGRPNGGPRAL                   
         230       240       250                    

>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo  (255 aa)
 initn: 828 init1: 597 opt: 909  Z-score: 540.9  bits: 107.7 E(85289): 2.2e-23
Smith-Waterman score: 909; 55.1% identity (73.5% similar) in 272 aa overlap (1-264:1-255)

               10        20        30        40        50          
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
       :.::::...:.:.:::::::::: :..:. :.. .:::    .: :    .. ::   ::
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYG----GGAQG--ADFQPPGLYPR
               10        20        30            40          50    

      60        70           80          90       100       110    
pF1KB8 PSYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAP
       :.. :. ..  :  :::..   ::::  :.  : :.   ..  : ::: .   : : :. 
NP_055 PDFGEQPFG-GSGPGPGSALPARGHGQEPGGPGGHYAAPGEP-C-PAPPAPPPA-PLPGA
           60         70        80        90         100        110

          120        130        140       150       160       170  
pF1KB8 PACSQPAPDHP-SSAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE
        : ::  : .: :..: ::: .:::::::.::..:::::.::::::::::::::::::::
NP_055 RAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELE
              120       130       140       150       160       170

            180       190       200       210       220       230  
pF1KB8 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP
       ::::.::::::::::::::.:::::::::::::::::::::::.::::: ::.       
NP_055 KEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------
              180       190       200       210       220          

            240       250       260    
pF1KB8 STLSAATPGTSEDHSQSATPPEQQRAEDITRL
       :. :... ..:   ::   :  ...  :.: :
NP_055 SSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
           230       240       250     

>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo  (320 aa)
 initn: 820 init1: 659 opt: 705  Z-score: 423.9  bits: 86.4 E(85289): 7.2e-17
Smith-Waterman score: 705; 48.6% identity (62.5% similar) in 253 aa overlap (10-252:71-306)

                                    10        20        30         
pF1KB8                      MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGR
                                     ..:  :.      :   .  : :.      
NP_002 GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAA--DT
               50        60        70        80        90          

      40        50        60        70          80              90 
pF1KB8 TRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP--GNSRGH------GPAQAGHHHP
       .   :..   .   :  ::.:  :  :      .::  :   .:       :    .  :
NP_002 AYPYGYRGGAS---PGRPPQPEQPPAQA-----KGPAHGLHASHVLQPQLPPPLQPRAVP
      100          110       120            130       140       150

             100        110       120        130       140         
pF1KB8 EKSQSLCEPAPLS-GASASPSPAPPACSQPAPDH-PSSAASKQPIVYPWMKKIHVSTVNP
         .   :: :: . :. :. :   :::     :. : .  .:.:.:::::::::::.:::
NP_002 PAAPRRCEAAPATPGVPAGGS--APACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNP
              160       170         180       190       200        

     150       160       170       180       190       200         
pF1KB8 NYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRM
       .::::::::::::::::::::::::::.::::::::::::::.:::::::.:::::::::
NP_002 SYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRM
      210       220       230       240       250       260        

     210       220       230       240       250       260      
pF1KB8 KWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL  
       ::::::.:::::.::.  :.:     ::. :: .. .:    :              
NP_002 KWKKDHKLPNTKMRSSNSASA-----SAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI
      270       280            290       300       310       320

>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo  (270 aa)
 initn: 586 init1: 382 opt: 529  Z-score: 324.7  bits: 67.8 E(85289): 2.4e-11
Smith-Waterman score: 529; 49.2% identity (64.9% similar) in 185 aa overlap (54-231:96-267)

            30        40        50        60        70         80  
pF1KB8 SQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-GPGNSRGHG
                                     : : : :        :...  .::..  ::
NP_061 SGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP--------CSAVAPSPGSDSHHG
          70        80        90       100               110       

                  90       100       110       120        130      
pF1KB8 -----PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP-APDHPSSAASKQPIVY
              ..:      :  .     .. ::..   :: .  :  : ..:: :   :: .:
NP_061 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY
       120       130       140       150       160       170       

        140       150       160       170       180       190      
pF1KB8 PWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS
       :::.:.:.:  . : .: : ::.:::::: :.::::::::.::::::::::::::.::::
NP_061 PWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
       180         190       200       210       220       230     

        200       210       220       230       240       250      
pF1KB8 ERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQ
       ::::::::::::::::::..:   :  :   ::.:                         
NP_061 ERQIKIWFQNRRMKWKKDNKL---KSMSMAAAGGAFRP                      
         240       250          260       270                      

        260    
pF1KB8 RAEDITRL

>>NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [Homo  (269 aa)
 initn: 452 init1: 384 opt: 497  Z-score: 306.6  bits: 64.4 E(85289): 2.5e-10
Smith-Waterman score: 520; 46.2% identity (67.2% similar) in 195 aa overlap (53-228:76-266)

             30        40        50        60        70            
pF1KB8 YSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP-------
                                     .: :  .: . .   :: ::..:       
NP_002 GYNYNGMDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSC-SLSSPESLPCTN
          50        60        70        80        90        100    

          80         90       100       110                120     
pF1KB8 GNSRGHGP-AQAGHHHPEKSQSLCEPAPLSGASASPSPAPPAC---------SQPAPDHP
       :.:.:  : :..   .  ...:  . . .. ::::  :   :          .:: :   
NP_002 GDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMAT
          110       120       130       140       150       160    

           130       140       150       160       170       180   
pF1KB8 SSAA--SKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTR
       :.::  .. : ..:::.:.:.:    ...: . ::.:::::: :.::::::::.::::::
NP_002 STAAPEGQTPQIFPWMRKLHIS---HDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTR
          170       180          190       200       210       220 

           190       200       210       220       230       240   
pF1KB8 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS
       ::::::::.::::::::::::::::::::::..: . .. .:  :               
NP_002 RRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP            
             230       240       250       260                     

           250       260    
pF1KB8 EDHSQSATPPEQQRAEDITRL

>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo  (224 aa)
 initn: 388 init1: 356 opt: 474  Z-score: 294.4  bits: 61.9 E(85289): 1.2e-09
Smith-Waterman score: 474; 41.1% identity (61.5% similar) in 231 aa overlap (8-225:1-215)

               10        20        30        40        50          
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
              :.: ...  ::     .:.:.. .  : :      ::.    .. :: :  : 
NP_061        MSSYFVNSTFPVTLASGQESFLGQL-PLY-----SSGYADPLRH-YPAPYGPG
                      10        20              30         40      

      60        70         80              90       100       110  
pF1KB8 PSYPERQYSCTSLQGP-GNSRG------HGPAQAGHHHPEKSQSLCEPAPLSGASASPS-
       :.  .. .. .:   : :.. :      .::: : ... :   : :    ::::. .:  
NP_061 PGQ-DKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKE---SACA---LSGADEQPPF
          50        60        70        80              90         

                120       130        140       150       160       
pF1KB8 -PAP--PACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQ
        : :    :.:       .  .: .  :::::....  . : .  :   .:.: .::: :
NP_061 HPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQ
     100       110       120       130         140       150       

       170       180       190       200       210       220       
pF1KB8 VLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPP
       .:::::::::::::::::::::::.:::.:::::::::::::::::. .: ...  ::  
NP_061 TLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEE
       160       170       180       190       200       210       

       230       240       250       260    
pF1KB8 AGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
                                            
NP_061 EEEKQAE                              
       220                                  

>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei  (224 aa)
 initn: 388 init1: 356 opt: 474  Z-score: 294.4  bits: 61.9 E(85289): 1.2e-09
Smith-Waterman score: 474; 41.1% identity (61.5% similar) in 231 aa overlap (8-225:1-215)

               10        20        30        40        50          
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
              :.: ...  ::     .:.:.. .  : :      ::.    .. :: :  : 
XP_005        MSSYFVNSTFPVTLASGQESFLGQL-PLY-----SSGYADPLRH-YPAPYGPG
                      10        20              30         40      

      60        70         80              90       100       110  
pF1KB8 PSYPERQYSCTSLQGP-GNSRG------HGPAQAGHHHPEKSQSLCEPAPLSGASASPS-
       :.  .. .. .:   : :.. :      .::: : ... :   : :    ::::. .:  
XP_005 PGQ-DKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKE---SACA---LSGADEQPPF
          50        60        70        80              90         

                120       130        140       150       160       
pF1KB8 -PAP--PACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQ
        : :    :.:       .  .: .  :::::....  . : .  :   .:.: .::: :
XP_005 HPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQ
     100       110       120       130         140       150       

       170       180       190       200       210       220       
pF1KB8 VLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPP
       .:::::::::::::::::::::::.:::.:::::::::::::::::. .: ...  ::  
XP_005 TLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEE
       160       170       180       190       200       210       

       230       240       250       260    
pF1KB8 AGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
                                            
XP_005 EEEKQAE                              
       220                                  

>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei  (224 aa)
 initn: 388 init1: 356 opt: 474  Z-score: 294.4  bits: 61.9 E(85289): 1.2e-09
Smith-Waterman score: 474; 41.1% identity (61.5% similar) in 231 aa overlap (8-225:1-215)

               10        20        30        40        50          
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
              :.: ...  ::     .:.:.. .  : :      ::.    .. :: :  : 
XP_005        MSSYFVNSTFPVTLASGQESFLGQL-PLY-----SSGYADPLRH-YPAPYGPG
                      10        20              30         40      

      60        70         80              90       100       110  
pF1KB8 PSYPERQYSCTSLQGP-GNSRG------HGPAQAGHHHPEKSQSLCEPAPLSGASASPS-
       :.  .. .. .:   : :.. :      .::: : ... :   : :    ::::. .:  
XP_005 PGQ-DKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKE---SACA---LSGADEQPPF
          50        60        70        80              90         

                120       130        140       150       160       
pF1KB8 -PAP--PACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQ
        : :    :.:       .  .: .  :::::....  . : .  :   .:.: .::: :
XP_005 HPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQ
     100       110       120       130         140       150       

       170       180       190       200       210       220       
pF1KB8 VLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPP
       .:::::::::::::::::::::::.:::.:::::::::::::::::. .: ...  ::  
XP_005 TLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEE
       160       170       180       190       200       210       

       230       240       250       260    
pF1KB8 AGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
                                            
XP_005 EEEKQAE                              
       220                                  




264 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:30:00 2016 done: Fri Nov  4 16:30:01 2016
 Total Scan time:  8.020 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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