Result of FASTA (ccds) for pF1KB8919
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8919, 264 aa
  1>>>pF1KB8919 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3941+/-0.00083; mu= 6.1050+/- 0.051
 mean_var=293.6398+/-59.611, 0's: 0 Z-trim(117.7): 131  B-trim: 1047 in 1/55
 Lambda= 0.074846
 statistics sampled from 18359 (18511) to 18359 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.569), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS8873.1 HOXC4 gene_id:3221|Hs108|chr12          ( 264) 1873 214.3 7.2e-56
CCDS11529.1 HOXB4 gene_id:3214|Hs108|chr17         ( 251)  925 111.9 4.5e-25
CCDS2269.1 HOXD4 gene_id:3233|Hs108|chr2           ( 255)  909 110.2 1.5e-24
CCDS5405.1 HOXA4 gene_id:3201|Hs108|chr7           ( 320)  705 88.3 7.5e-18
CCDS5406.1 HOXA5 gene_id:3202|Hs108|chr7           ( 270)  529 69.2 3.5e-12
CCDS11530.1 HOXB5 gene_id:3215|Hs108|chr17         ( 269)  497 65.7 3.9e-11


>>CCDS8873.1 HOXC4 gene_id:3221|Hs108|chr12               (264 aa)
 initn: 1873 init1: 1873 opt: 1873  Z-score: 1116.6  bits: 214.3 E(32554): 7.2e-56
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
              190       200       210       220       230       240

              250       260    
pF1KB8 GTSEDHSQSATPPEQQRAEDITRL
       ::::::::::::::::::::::::
CCDS88 GTSEDHSQSATPPEQQRAEDITRL
              250       260    

>>CCDS11529.1 HOXB4 gene_id:3214|Hs108|chr17              (251 aa)
 initn: 1092 init1: 704 opt: 925  Z-score: 563.6  bits: 111.9 E(32554): 4.5e-25
Smith-Waterman score: 953; 59.9% identity (71.8% similar) in 252 aa overlap (1-231:1-237)

               10        20        30           40                 
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIP-EHSPEYY--GRTRESGFQHHH--------
       : :::.:..:::.::::::::::::..:.: .::: ::  :. :::.:: .         
CCDS11 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
               10        20        30        40        50        60

              50        60        70         80        90       100
pF1KB8 --------QELYPPPPPRPSYPERQYSCTSLQGPGNS-RGHGPAQAGHHHPEKSQSLCEP
               ..  ::::: :  :           :: : :. .:  ::   :: .:  :: 
CCDS11 TVQRYAACRDPGPPPPPPPPPPPPP-------PPGLSPRAPAPPPAGALLPEPGQR-CE-
               70        80               90       100        110  

              110        120       130       140       150         
pF1KB8 APLSGASASPSPAPPACSQ-PAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS
             ..: :: :: :.: :    :: .: :.:.:::::.:.::::::::: :::::::
CCDS11 ------AVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRS
                   120       130       140       150       160     

     160       170       180       190       200       210         
pF1KB8 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN
       :::::::::::::::::::::::::::.::::.:::::::::::::::::::::::.:::
CCDS11 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPN
         170       180       190       200       210       220     

     220       230       240       250       260    
pF1KB8 TKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
       ::.::.  ::.:                                 
CCDS11 TKIRSGGAAGSAGGPPGRPNGGPRAL                   
         230       240       250                    

>>CCDS2269.1 HOXD4 gene_id:3233|Hs108|chr2                (255 aa)
 initn: 828 init1: 597 opt: 909  Z-score: 554.2  bits: 110.2 E(32554): 1.5e-24
Smith-Waterman score: 909; 55.1% identity (73.5% similar) in 272 aa overlap (1-264:1-255)

               10        20        30        40        50          
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
       :.::::...:.:.:::::::::: :..:. :.. .:::    .: :    .. ::   ::
CCDS22 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYG----GGAQG--ADFQPPGLYPR
               10        20        30            40          50    

      60        70           80          90       100       110    
pF1KB8 PSYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAP
       :.. :. ..  :  :::..   ::::  :.  : :.   ..  : ::: .   : : :. 
CCDS22 PDFGEQPFG-GSGPGPGSALPARGHGQEPGGPGGHYAAPGEP-C-PAPPAPPPA-PLPGA
           60         70        80        90         100        110

          120        130        140       150       160       170  
pF1KB8 PACSQPAPDHP-SSAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE
        : ::  : .: :..: ::: .:::::::.::..:::::.::::::::::::::::::::
CCDS22 RAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELE
              120       130       140       150       160       170

            180       190       200       210       220       230  
pF1KB8 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP
       ::::.::::::::::::::.:::::::::::::::::::::::.::::: ::.       
CCDS22 KEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------
              180       190       200       210       220          

            240       250       260    
pF1KB8 STLSAATPGTSEDHSQSATPPEQQRAEDITRL
       :. :... ..:   ::   :  ...  :.: :
CCDS22 SSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
           230       240       250     

>>CCDS5405.1 HOXA4 gene_id:3201|Hs108|chr7                (320 aa)
 initn: 820 init1: 659 opt: 705  Z-score: 434.0  bits: 88.3 E(32554): 7.5e-18
Smith-Waterman score: 705; 48.6% identity (62.5% similar) in 253 aa overlap (10-252:71-306)

                                    10        20        30         
pF1KB8                      MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGR
                                     ..:  :.      :   .  : :.      
CCDS54 GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAA--DT
               50        60        70        80        90          

      40        50        60        70          80              90 
pF1KB8 TRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP--GNSRGH------GPAQAGHHHP
       .   :..   .   :  ::.:  :  :      .::  :   .:       :    .  :
CCDS54 AYPYGYRGGAS---PGRPPQPEQPPAQA-----KGPAHGLHASHVLQPQLPPPLQPRAVP
      100          110       120            130       140       150

             100        110       120        130       140         
pF1KB8 EKSQSLCEPAPLS-GASASPSPAPPACSQPAPDH-PSSAASKQPIVYPWMKKIHVSTVNP
         .   :: :: . :. :. :   :::     :. : .  .:.:.:::::::::::.:::
CCDS54 PAAPRRCEAAPATPGVPAGGS--APACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNP
              160       170         180       190       200        

     150       160       170       180       190       200         
pF1KB8 NYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRM
       .::::::::::::::::::::::::::.::::::::::::::.:::::::.:::::::::
CCDS54 SYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRM
      210       220       230       240       250       260        

     210       220       230       240       250       260      
pF1KB8 KWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL  
       ::::::.:::::.::.  :.:     ::. :: .. .:    :              
CCDS54 KWKKDHKLPNTKMRSSNSASA-----SAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI
      270       280            290       300       310       320

>>CCDS5406.1 HOXA5 gene_id:3202|Hs108|chr7                (270 aa)
 initn: 586 init1: 382 opt: 529  Z-score: 332.1  bits: 69.2 E(32554): 3.5e-12
Smith-Waterman score: 529; 49.2% identity (64.9% similar) in 185 aa overlap (54-231:96-267)

            30        40        50        60        70         80  
pF1KB8 SQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-GPGNSRGHG
                                     : : : :        :...  .::..  ::
CCDS54 SGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP--------CSAVAPSPGSDSHHG
          70        80        90       100               110       

                  90       100       110       120        130      
pF1KB8 -----PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP-APDHPSSAASKQPIVY
              ..:      :  .     .. ::..   :: .  :  : ..:: :   :: .:
CCDS54 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY
       120       130       140       150       160       170       

        140       150       160       170       180       190      
pF1KB8 PWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS
       :::.:.:.:  . : .: : ::.:::::: :.::::::::.::::::::::::::.::::
CCDS54 PWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
       180         190       200       210       220       230     

        200       210       220       230       240       250      
pF1KB8 ERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQ
       ::::::::::::::::::..:   :  :   ::.:                         
CCDS54 ERQIKIWFQNRRMKWKKDNKL---KSMSMAAAGGAFRP                      
         240       250          260       270                      

        260    
pF1KB8 RAEDITRL

>>CCDS11530.1 HOXB5 gene_id:3215|Hs108|chr17              (269 aa)
 initn: 452 init1: 384 opt: 497  Z-score: 313.5  bits: 65.7 E(32554): 3.9e-11
Smith-Waterman score: 520; 46.2% identity (67.2% similar) in 195 aa overlap (53-228:76-266)

             30        40        50        60        70            
pF1KB8 YSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP-------
                                     .: :  .: . .   :: ::..:       
CCDS11 GYNYNGMDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSC-SLSSPESLPCTN
          50        60        70        80        90        100    

          80         90       100       110                120     
pF1KB8 GNSRGHGP-AQAGHHHPEKSQSLCEPAPLSGASASPSPAPPAC---------SQPAPDHP
       :.:.:  : :..   .  ...:  . . .. ::::  :   :          .:: :   
CCDS11 GDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMAT
          110       120       130       140       150       160    

           130       140       150       160       170       180   
pF1KB8 SSAA--SKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTR
       :.::  .. : ..:::.:.:.:    ...: . ::.:::::: :.::::::::.::::::
CCDS11 STAAPEGQTPQIFPWMRKLHIS---HDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTR
          170       180          190       200       210       220 

           190       200       210       220       230       240   
pF1KB8 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS
       ::::::::.::::::::::::::::::::::..: . .. .:  :               
CCDS11 RRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP            
             230       240       250       260                     

           250       260    
pF1KB8 EDHSQSATPPEQQRAEDITRL




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:29:59 2016 done: Fri Nov  4 16:30:00 2016
 Total Scan time:  2.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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