Result of FASTA (ccds) for pF1KB8901
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8901, 233 aa
  1>>>pF1KB8901 233 - 233 aa - 233 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4893+/-0.00085; mu= 13.2360+/- 0.051
 mean_var=68.1229+/-13.493, 0's: 0 Z-trim(106.8): 26  B-trim: 0 in 0/50
 Lambda= 0.155392
 statistics sampled from 9154 (9175) to 9154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.282), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS13189.1 BCL2L1 gene_id:598|Hs108|chr20         ( 233) 1550 356.2 1.1e-98
CCDS13188.1 BCL2L1 gene_id:598|Hs108|chr20         ( 170)  816 191.6 2.8e-49
CCDS11981.1 BCL2 gene_id:596|Hs108|chr18           ( 239)  599 143.0 1.6e-34
CCDS45882.1 BCL2 gene_id:596|Hs108|chr18           ( 205)  551 132.2 2.5e-31
CCDS9591.1 BCL2L2 gene_id:599|Hs108|chr14          ( 193)  531 127.7 5.2e-30
CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14   ( 333)  462 112.4 3.8e-25


>>CCDS13189.1 BCL2L1 gene_id:598|Hs108|chr20              (233 aa)
 initn: 1550 init1: 1550 opt: 1550  Z-score: 1885.5  bits: 356.2 E(32554): 1.1e-98
Smith-Waterman score: 1550; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)

               10        20        30        40        50        60
pF1KB8 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEP
              130       140       150       160       170       180

              190       200       210       220       230   
pF1KB8 WIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
              190       200       210       220       230   

>>CCDS13188.1 BCL2L1 gene_id:598|Hs108|chr20              (170 aa)
 initn: 1093 init1: 816 opt: 816  Z-score: 998.3  bits: 191.6 E(32554): 2.8e-49
Smith-Waterman score: 971; 73.0% identity (73.0% similar) in 233 aa overlap (1-233:1-170)

               10        20        30        40        50        60
pF1KB8 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEP
       :::::                                                       
CCDS13 QSFEQ-------------------------------------------------------
                                                                   

              190       200       210       220       230   
pF1KB8 WIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
               :::::::::::::::::::::::::::::::::::::::::::::
CCDS13 --------DTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
                 130       140       150       160       170

>>CCDS11981.1 BCL2 gene_id:596|Hs108|chr18                (239 aa)
 initn: 606 init1: 524 opt: 599  Z-score: 733.2  bits: 143.0 E(32554): 1.6e-34
Smith-Waterman score: 599; 51.0% identity (72.0% similar) in 200 aa overlap (5-196:11-203)

                     10        20        30           40           
pF1KB8       MSQSNRELVVDFLSYKLSQKGYSWSQFSDV---EENRTEAPEGTESEM--ETPS
                 :::.:. .. :::::.:: :.  .::     . . :: :  : .  .:: 
CCDS11 MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDA-GDVGAAPPGAAPAP-GIFSSQPGHTPH
               10        20        30         40         50        

       50        60          70        80        90       100      
pF1KB8 -AINGNPSWHLA--DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFS
        : . .:  . .  ..::. ::..      :   .:  .:. .::.:::.:  :::: :.
CCDS11 PAASRDPVARTSPLQTPAAPGAAAGP----ALSPVP-PVVHLTLRQAGDDFSRRYRRDFA
       60        70        80            90        100       110   

        110       120       130       140       150       160      
pF1KB8 DLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRI
       ...::::.:: ::   :  ::.:::::::::::::::: :::..:::::..::. ::. :
CCDS11 EMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNI
           120       130       140       150       160       170   

        170       180       190       200       210       220      
pF1KB8 AAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLL
       : ::. ::: ::. :::.:::::.::::::                              
CCDS11 ALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACITLG
           180       190       200       210       220       230   

>>CCDS45882.1 BCL2 gene_id:596|Hs108|chr18                (205 aa)
 initn: 558 init1: 476 opt: 551  Z-score: 676.0  bits: 132.2 E(32554): 2.5e-31
Smith-Waterman score: 551; 49.5% identity (70.8% similar) in 192 aa overlap (5-188:11-195)

                     10        20        30           40           
pF1KB8       MSQSNRELVVDFLSYKLSQKGYSWSQFSDV---EENRTEAPEGTESEM--ETPS
                 :::.:. .. :::::.:: :.  .::     . . :: :  : .  .:: 
CCDS45 MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDA-GDVGAAPPGAAPAP-GIFSSQPGHTPH
               10        20        30         40         50        

       50        60          70        80        90       100      
pF1KB8 -AINGNPSWHLA--DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFS
        : . .:  . .  ..::. ::    ..  :   .:  .:. .::.:::.:  :::: :.
CCDS45 PAASRDPVARTSPLQTPAAPGA----AAGPALSPVP-PVVHLTLRQAGDDFSRRYRRDFA
       60        70        80            90        100       110   

        110       120       130       140       150       160      
pF1KB8 DLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRI
       ...::::.:: ::   :  ::.:::::::::::::::: :::..:::::..::. ::. :
CCDS45 EMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNI
           120       130       140       150       160       170   

        170       180       190       200       210       220      
pF1KB8 AAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLL
       : ::. ::: ::. :::.::::                                      
CCDS45 ALWMTEYLNRHLHTWIQDNGGWVGALGDVSLG                            
           180       190       200                                 

>>CCDS9591.1 BCL2L2 gene_id:599|Hs108|chr14               (193 aa)
 initn: 595 init1: 507 opt: 531  Z-score: 652.2  bits: 127.7 E(32554): 5.2e-30
Smith-Waterman score: 531; 51.7% identity (77.5% similar) in 151 aa overlap (82-231:37-185)

              60        70        80         90       100       110
pF1KB8 NGNPSWHLADSPAVNGATGHSSSLDAREVIPMA-AVKQALREAGDEFELRYRRAFSDLTS
                                     : :  ..::.: :::::: :.::.::::..
CCDS95 APDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAA
         10        20        30        40        50        60      

              120       130       140       150       160       170
pF1KB8 QLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWM
       :::.:::.: : : :: .:::. : ::::.:::: ::.:::.:::.:::. ::...  ::
CCDS95 QLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWM
         70        80        90       100       110       120      

              180       190       200       210       220       230
pF1KB8 ATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLF
       ..::. .:  ::. .:::  :. :::..:  :.:. .:  . :  .  ...:.: ::.: 
CCDS95 VAYLETQLADWIHSSGGWAEFTALYGDGALEEARRLRE--GNWASVRTVLTGAVALGALV
        130       140       150       160         170       180    

                
pF1KB8 SRK      
       .        
CCDS95 TVGAFFASK
          190   

>>CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14        (333 aa)
 initn: 526 init1: 460 opt: 462  Z-score: 565.0  bits: 112.4 E(32554): 3.8e-25
Smith-Waterman score: 462; 58.7% identity (82.6% similar) in 109 aa overlap (82-189:37-145)

              60        70        80         90       100       110
pF1KB8 NGNPSWHLADSPAVNGATGHSSSLDAREVIPMA-AVKQALREAGDEFELRYRRAFSDLTS
                                     : :  ..::.: :::::: :.::.::::..
CCDS55 APDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAA
         10        20        30        40        50        60      

              120       130       140       150       160       170
pF1KB8 QLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWM
       :::.:::.: : : :: .:::. : ::::.:::: ::.:::.:::.:::. ::...  ::
CCDS55 QLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWM
         70        80        90       100       110       120      

              180       190       200       210       220       230
pF1KB8 ATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLF
       ..::. .:  ::. .:::.                                         
CCDS55 VAYLETQLADWIHSSGGWELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV
        130       140       150       160       170       180      




233 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:25:07 2016 done: Fri Nov  4 16:25:07 2016
 Total Scan time:  2.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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