Result of FASTA (ccds) for pF1KB8891
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8891, 211 aa
  1>>>pF1KB8891 211 - 211 aa - 211 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3430+/-0.000594; mu= 15.2572+/- 0.036
 mean_var=83.6250+/-16.374, 0's: 0 Z-trim(113.6): 22  B-trim: 0 in 0/52
 Lambda= 0.140251
 statistics sampled from 14217 (14238) to 14217 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.437), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS3922.1 GDNF gene_id:2668|Hs108|chr5            ( 211) 1441 300.2 6.3e-82
CCDS54845.1 GDNF gene_id:2668|Hs108|chr5           ( 228) 1441 300.2 6.7e-82
CCDS3923.1 GDNF gene_id:2668|Hs108|chr5            ( 185) 1097 230.5 5.2e-61
CCDS54846.1 GDNF gene_id:2668|Hs108|chr5           ( 202) 1097 230.5 5.5e-61
CCDS75237.1 GDNF gene_id:2668|Hs108|chr5           ( 159) 1089 228.8 1.4e-60
CCDS12151.1 NRTN gene_id:4902|Hs108|chr19          ( 197)  336 76.6 1.2e-14


>>CCDS3922.1 GDNF gene_id:2668|Hs108|chr5                 (211 aa)
 initn: 1441 init1: 1441 opt: 1441  Z-score: 1584.3  bits: 300.2 E(32554): 6.3e-82
Smith-Waterman score: 1441; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB8 MKLWDVVAVCLVLLHTASAFPLPAGKRPPEAPAEDRSLGRRRAPFALSSDSNMPEDYPDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MKLWDVVAVCLVLLHTASAFPLPAGKRPPEAPAEDRSLGRRRAPFALSSDSNMPEDYPDQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 FDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCR
              130       140       150       160       170       180

              190       200       210 
pF1KB8 PIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
       :::::::::::::::::::::::::::::::
CCDS39 PIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
              190       200       210 

>>CCDS54845.1 GDNF gene_id:2668|Hs108|chr5                (228 aa)
 initn: 1441 init1: 1441 opt: 1441  Z-score: 1583.8  bits: 300.2 E(32554): 6.7e-82
Smith-Waterman score: 1441; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:18-228)

                                10        20        30        40   
pF1KB8                  MKLWDVVAVCLVLLHTASAFPLPAGKRPPEAPAEDRSLGRRRA
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS54 MQSLPNSNGAAAGRDFKMKLWDVVAVCLVLLHTASAFPLPAGKRPPEAPAEDRSLGRRRA
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KB8 PFALSSDSNMPEDYPDQFDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PFALSSDSNMPEDYPDQFDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENS
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB8 RGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNL
              130       140       150       160       170       180

           170       180       190       200       210 
pF1KB8 SRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
              190       200       210       220        

>>CCDS3923.1 GDNF gene_id:2668|Hs108|chr5                 (185 aa)
 initn: 1097 init1: 1097 opt: 1097  Z-score: 1208.9  bits: 230.5 E(32554): 5.2e-61
Smith-Waterman score: 1197; 87.2% identity (87.7% similar) in 211 aa overlap (1-211:1-185)

               10        20        30        40        50        60
pF1KB8 MKLWDVVAVCLVLLHTASAFPLPAGKRPPEAPAEDRSLGRRRAPFALSSDSNMPEDYPDQ
       ::::::::::::::::::::::::                          .:::::::::
CCDS39 MKLWDVVAVCLVLLHTASAFPLPA--------------------------ANMPEDYPDQ
               10        20                                  30    

               70        80        90       100       110       120
pF1KB8 FDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 FDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVL
           40        50        60        70        80        90    

              130       140       150       160       170       180
pF1KB8 TAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCR
          100       110       120       130       140       150    

              190       200       210 
pF1KB8 PIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
       :::::::::::::::::::::::::::::::
CCDS39 PIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
          160       170       180     

>>CCDS54846.1 GDNF gene_id:2668|Hs108|chr5                (202 aa)
 initn: 1097 init1: 1097 opt: 1097  Z-score: 1208.4  bits: 230.5 E(32554): 5.5e-61
Smith-Waterman score: 1197; 87.2% identity (87.7% similar) in 211 aa overlap (1-211:18-202)

                                10        20        30        40   
pF1KB8                  MKLWDVVAVCLVLLHTASAFPLPAGKRPPEAPAEDRSLGRRRA
                        ::::::::::::::::::::::::                   
CCDS54 MQSLPNSNGAAAGRDFKMKLWDVVAVCLVLLHTASAFPLPA-------------------
               10        20        30        40                    

            50        60        70        80        90       100   
pF1KB8 PFALSSDSNMPEDYPDQFDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENS
              .::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 -------ANMPEDYPDQFDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENS
                     50        60        70        80        90    

           110       120       130       140       150       160   
pF1KB8 RGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNL
          100       110       120       130       140       150    

           170       180       190       200       210 
pF1KB8 SRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
          160       170       180       190       200  

>>CCDS75237.1 GDNF gene_id:2668|Hs108|chr5                (159 aa)
 initn: 1089 init1: 1089 opt: 1089  Z-score: 1201.0  bits: 228.8 E(32554): 1.4e-60
Smith-Waterman score: 1089; 100.0% identity (100.0% similar) in 159 aa overlap (53-211:1-159)

             30        40        50        60        70        80  
pF1KB8 PAGKRPPEAPAEDRSLGRRRAPFALSSDSNMPEDYPDQFDDVMDFIQATIKRLKRSPDKQ
                                     ::::::::::::::::::::::::::::::
CCDS75                               MPEDYPDQFDDVMDFIQATIKRLKRSPDKQ
                                             10        20        30

             90       100       110       120       130       140  
pF1KB8 MAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIF
               40        50        60        70        80        90

            150       160       170       180       190       200  
pF1KB8 RYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRK
              100       110       120       130       140       150

            210 
pF1KB8 HSAKRCGCI
       :::::::::
CCDS75 HSAKRCGCI
                

>>CCDS12151.1 NRTN gene_id:4902|Hs108|chr19               (197 aa)
 initn: 322 init1: 156 opt: 336  Z-score: 376.3  bits: 76.6 E(32554): 1.2e-14
Smith-Waterman score: 336; 41.7% identity (71.3% similar) in 115 aa overlap (98-211:87-197)

        70        80        90       100       110       120       
pF1KB8 IQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNV
                                     :.:.  :...: : :     : :  ... :
CCDS12 YRALLQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLGARP----CGLRELEVRV
         60        70        80        90       100           110  

       130       140       150       160       170        180      
pF1KB8 TDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKV-GQACCRPIAFDD
       ..::::: . : ..::::.:.:.::  .::  :. : . :::  ..: .: :::: :..:
CCDS12 SELGLGYASDETVLFRYCAGACEAAARVYDLGLRRLRQRRRLRRERVRAQPCCRPTAYED
            120       130       140       150       160       170  

        190       200       210 
pF1KB8 DLSFLDDNLVYHILRKHSAKRCGCI
       ..:::: .  :: ... ::..:.:.
CCDS12 EVSFLDAHSRYHTVHELSARECACV
            180       190       




211 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:22:26 2016 done: Fri Nov  4 16:22:26 2016
 Total Scan time:  2.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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