Result of FASTA (omim) for pF1KB8887
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8887, 198 aa
  1>>>pF1KB8887 198 - 198 aa - 198 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0634+/-0.000266; mu= 13.3420+/- 0.017
 mean_var=144.4799+/-29.812, 0's: 0 Z-trim(123.6): 264  B-trim: 28 in 1/54
 Lambda= 0.106701
 statistics sampled from 43249 (43571) to 43249 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.511), width:  16
 Scan time:  7.310

The best scores are:                                      opt bits E(85289)
NP_001269359 (OMIM: 607164) transcription factor L ( 198) 1330 214.8 7.3e-56
NP_001009812 (OMIM: 607164) transcription factor L ( 194)  880 145.5 5.1e-35
NP_006553 (OMIM: 604255) transcription factor LBX1 ( 281)  515 89.5 5.3e-18
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  282 53.7 3.6e-07
NP_057254 (OMIM: 604240) T-cell leukemia homeobox  ( 284)  280 53.4 4.2e-07
NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8  ( 239)  270 51.7 1.1e-06
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324)  265 51.1 2.2e-06
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301)  260 50.3 3.6e-06
NP_005512 (OMIM: 186770) T-cell leukemia homeobox  ( 330)  252 49.1 9.1e-06
NP_066305 (OMIM: 604640) T-cell leukemia homeobox  ( 291)  249 48.6 1.2e-05
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342)  249 48.7 1.3e-05
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356)  248 48.5 1.5e-05
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  240 47.1 2.7e-05
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348)  240 47.3 3.4e-05
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267)  232 45.9 6.7e-05
NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233)  231 45.7 6.8e-05
NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3  ( 364)  231 45.9 9.1e-05
NP_001182446 (OMIM: 186770) T-cell leukemia homeob ( 257)  227 45.1 0.00011
NP_001099044 (OMIM: 613380) homeobox protein HMX3  ( 357)  228 45.5 0.00012
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303)  227 45.2 0.00012
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159)  223 44.3 0.00013
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273)  226 45.0 0.00013
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273)  226 45.0 0.00013
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230)  224 44.6 0.00014
XP_011538047 (OMIM: 186770) PREDICTED: T-cell leuk ( 269)  224 44.7 0.00016
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333)  225 45.0 0.00016
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346)  224 44.8 0.00019
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233)  221 44.2  0.0002
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254)  221 44.2 0.00021
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432)  224 44.9 0.00021
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  224 44.9 0.00021
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  224 44.9 0.00021
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  224 44.9 0.00021
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  224 44.9 0.00021
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  224 44.9 0.00021
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  224 44.9 0.00021
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  224 44.9 0.00021
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1  ( 234)  220 44.0 0.00022
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279)  221 44.3 0.00022
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184)  218 43.6 0.00023
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284)  220 44.1 0.00025
XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203)  217 43.5 0.00028
XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204)  217 43.5 0.00028
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401)  221 44.5 0.00028
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406)  221 44.5 0.00028
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  217 43.6 0.00033
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  217 43.6 0.00033
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348)  218 43.9 0.00035
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363)  217 43.8  0.0004
XP_011530999 (OMIM: 600034) PREDICTED: homeobox pr ( 119)  210 42.1 0.00042


>>NP_001269359 (OMIM: 607164) transcription factor LBX2   (198 aa)
 initn: 1330 init1: 1330 opt: 1330  Z-score: 1124.0  bits: 214.8 E(85289): 7.3e-56
Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KB8 MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPLCALEELTSKTFRGLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPLCALEELTSKTFRGLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVLCSLALPEGAPDPGLCLGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVLCSLALPEGAPDPGLCLGP
              130       140       150       160       170       180

              190        
pF1KB8 AGPDSRPHLSDEEIQVDD
       ::::::::::::::::::
NP_001 AGPDSRPHLSDEEIQVDD
              190        

>>NP_001009812 (OMIM: 607164) transcription factor LBX2   (194 aa)
 initn: 868 init1: 868 opt: 880  Z-score: 749.7  bits: 145.5 E(85289): 5.1e-35
Smith-Waterman score: 880; 80.3% identity (86.7% similar) in 173 aa overlap (26-198:28-194)

                 10        20        30        40        50        
pF1KB8   MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPLCALEELTSKTFRG
                                  : : : :  : .       ::   . .:..   
NP_001 MGKRTSLEVSLGELGGEKCRGGRRSFPPLAASRPARPGGWRWARRDLC---KTASRAEN-
               10        20        30        40           50       

       60        70        80        90       100       110        
pF1KB8 LDARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGL
        ...: .:.. :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -NSQACRPQR-RAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGL
          60         70        80        90       100       110    

      120       130       140       150       160       170        
pF1KB8 ATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVLCSLALPEGAPDPGLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVLCSLALPEGAPDPGLCL
          120       130       140       150       160       170    

      180       190        
pF1KB8 GPAGPDSRPHLSDEEIQVDD
       ::::::::::::::::::::
NP_001 GPAGPDSRPHLSDEEIQVDD
          180       190    

>>NP_006553 (OMIM: 604255) transcription factor LBX1 [Ho  (281 aa)
 initn: 591 init1: 513 opt: 515  Z-score: 444.1  bits: 89.5 E(85289): 5.3e-18
Smith-Waterman score: 515; 57.8% identity (76.2% similar) in 147 aa overlap (13-159:59-199)

                                 10        20        30        40  
pF1KB8                   MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPT
                                     ::. ::  :   .: :  :  : .     :
NP_006 SNKPLTPFSIEDILNKPSVRRSYSLCGAAHLLAAADKHAQGGLPLAGRA-LLSQ-----T
       30        40        50        60        70         80       

             50        60        70        80        90       100  
pF1KB8 SPLCALEELTSKTFRGLDARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELER
       :::::::::.::::.::.. .:: .::: :   .:     .:::::::::: .:. :::.
NP_006 SPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYELEK
             90       100       110       120       130       140  

            110       120       130       140       150       160  
pF1KB8 RFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVL
       ::..::::.:..:: .: .:::.::::.:::::::::::::.:::.::: : . :.:   
NP_006 RFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKLGPSGQ
            150       160       170       180       190       200  

            170       180       190                                
pF1KB8 CSLALPEGAPDPGLCLGPAGPDSRPHLSDEEIQVDD                        
                                                                   
NP_006 MDIVALAELEQNSEATAGGGGGCGRAKSRPGSPVLPPGAPKAPGAGALQLSPASPLTDQP
            210       220       230       240       250       260  

>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo  (320 aa)
 initn: 253 init1: 186 opt: 282  Z-score: 249.6  bits: 53.7 E(85289): 3.6e-07
Smith-Waterman score: 282; 33.2% identity (57.8% similar) in 187 aa overlap (6-185:137-319)

                                        10         20        30    
pF1KB8                          MNSGREPRTPRTLLSIA-DILAPRMVPRAPSAPQL
                                     .:. :  :   :    :::    ::..: .
NP_002 GASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGV
        110       120       130       140       150       160      

           40        50        60          70        80        90  
pF1KB8 PESGPGPTSPLCALEELTSKTFRGLDAR--ALQPSEGRAGPDALGPGPFGRKRRKSRTAF
       : .: .:. ::     :..:.  :: ..  .. :   .   .:..:.  : . ..::::.
NP_002 PAGGSAPACPLL----LADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAY
        170           180       190       200       210       220  

            100       110       120       130       140            
pF1KB8 TAQQVLELERRFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVE----EMR
       : :::::::..: :..::.  .:  .:  : :.. ::  :::::: : :.: .    .::
NP_002 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMR
            230       240       250       260       270       280  

      150       160       170       180       190        
pF1KB8 ADVASLRALSPEVLCSLALPEGAPDPGLCLGPAGPDSRPHLSDEEIQVDD
       .. ..  . .:    .   :.  : :    .   :.:             
NP_002 SSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI            
            290       300       310       320            

>>NP_057254 (OMIM: 604240) T-cell leukemia homeobox prot  (284 aa)
 initn: 269 init1: 246 opt: 280  Z-score: 248.6  bits: 53.4 E(85289): 4.2e-07
Smith-Waterman score: 286; 39.8% identity (55.8% similar) in 181 aa overlap (16-178:80-254)

                              10        20        30        40     
pF1KB8                MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPL
                                     .  . : : .:  : :   :   ::: : :
NP_057 FSGGYHGASGYGPAGSLAPLPGSSGVGPGGVIRVPAHRPLPVPPPAGGAPAV-PGP-SGL
      50        60        70        80        90       100         

          50        60                    70        80        90   
pF1KB8 CALEELTSKTFRGLDA----------RALQPSEG--RAGPDALGPGPFGRKRRKSRTAFT
        .   :.. ::  .:.           ::.:  :  : :    .  :   ::.: ::.:.
NP_057 GGAGGLAGLTFPWMDSGRRFAKDRLTAALSPFSGTRRIGHPYQNRTP--PKRKKPRTSFS
       110       120       130       140       150         160     

           100       110       120       130       140       150   
pF1KB8 AQQVLELERRFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVAS
        .:::::::::. ::::: .:: .::  : ...::: :::::::.: .:.. : : ..  
NP_057 RSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEER-EAER
         170       180       190       200       210       220     

                 160       170       180       190                 
pF1KB8 LRA------LSPEVLCSLALPEGAPDPGLCLGPAGPDSRPHLSDEEIQVDD         
        ::      :. ..:     :   ::: :::                             
NP_057 HRAGRLLLHLQQDALPRPLRPPLPPDP-LCLHNSSLFALQNLQPWAEDNKVASVSGLASV
          230       240       250        260       270       280   

NP_057 V
        

>>NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 [Hom  (239 aa)
 initn: 265 init1: 213 opt: 270  Z-score: 241.1  bits: 51.7 E(85289): 1.1e-06
Smith-Waterman score: 270; 35.6% identity (56.0% similar) in 191 aa overlap (3-182:4-186)

                10        20        30        40        50         
pF1KB8  MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPLCALEELTSKT--FR
          :::   : :.::.. .  : .. ::    :. :.  : :    ::   : :.   . 
NP_055 MATSGRLSFTVRSLLDLPEQDAQHL-PRREPEPRAPQ--PDP----CA-AWLDSERGHYP
               10        20         30              40         50  

        60          70          80        90       100       110   
pF1KB8 GLDARALQ--PSEGRAGPDA--LGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPS
       . :  .:.  : ..   :.:   .::  ..::.: :. :.  :.:::::::  :.::.  
NP_055 SSDESSLETSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAP
             60        70        80        90       100       110  

           120       130       140       150            160        
pF1KB8 ERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRA-----LSPEVLCSLALP
       ::. ::. : :. .::  ::::.: ::::      :.  .: :      .: .:  ...:
NP_055 EREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVP
            120       130       140       150       160       170  

      170       180       190                                      
pF1KB8 EGAPDPGLCLGPAGPDSRPHLSDEEIQVDD                              
         . :   : : .:                                              
NP_055 VLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSALGLFPAYQHLASP
            180       190       200       210       220       230  

>>NP_004378 (OMIM: 108900,187500,217095,225250,600584,61  (324 aa)
 initn: 316 init1: 248 opt: 265  Z-score: 235.4  bits: 51.1 E(85289): 2.2e-06
Smith-Waterman score: 295; 37.0% identity (56.4% similar) in 181 aa overlap (4-183:74-236)

                                          10        20        30   
pF1KB8                            MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQ
                                     :: : .:    : :   :: . ::: : :.
NP_004 SSCMLAAFKPEAYAGPEAAAPGLPELRAELGRAP-SPAKCAS-AFPAAPAFYPRAYSDPD
            50        60        70         80         90       100 

             40        50        60        70        80        90  
pF1KB8 LPESGP-GPTSPLCALEELTSKTFRGLDARALQPSEGRAGPDALGPGPFGRKRRKSRTAF
        : . : .  . ::::..          :  :. .:.  .       : .:.::: :. :
NP_004 -PAKDPRAEKKELCALQK----------AVELEKTEADNAER-----PRARRRRKPRVLF
              110                 120       130            140     

            100       110       120       130       140       150  
pF1KB8 TAQQVLELERRFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVA
       .  :: ::::::  :.::.  ::: ::. : :...::  :::::: : ::. ...  ...
NP_004 SQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELV
         150       160       170       180       190       200     

            160       170       180       190                      
pF1KB8 SLRALSPEVLCSLALPEGAPDPGLCLGPAGPDSRPHLSDEEIQVDD              
       .:    :     .:.:  . :   ::: ..:                             
NP_004 GLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACS
         210       220       230       240       250       260     

NP_004 PGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW
         270       280       290       300       310       320    

>>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk  (301 aa)
 initn: 267 init1: 203 opt: 260  Z-score: 231.7  bits: 50.3 E(85289): 3.6e-06
Smith-Waterman score: 260; 40.3% identity (63.6% similar) in 129 aa overlap (58-183:102-225)

        30        40        50        60        70           80    
pF1KB8 APSAPQLPESGPGPTSPLCALEELTSKTFRGLDARALQPSEGRAGPDALG---PGPFGRK
                                     :  .:. . . : .: .. :     : .:.
NP_001 PPGGPCEAVLEMDAERMGEPQPGLNAASPLGGGTRVPERGVGNSGDSVRGGRSEQPKARQ
              80        90       100       110       120       130 

           90       100       110       120       130       140    
pF1KB8 RRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDV
       ::: :. :.  ::: :::::  :.::.  ::. ::. : :...::  :::::: : ::. 
NP_001 RRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQR
             140       150       160       170       180       190 

          150       160       170       180       190              
pF1KB8 EEMRADVASLRALSPEVLCSLALPEGAPDPGLCLGPAGPDSRPHLSDEEIQVDD      
       ..   ..:. . :.:.    .:.:  . :   :::: ::                     
NP_001 QDKSLELAG-HPLTPR---RVAVPVLVRDGKPCLGP-GPGAPAFPSPYSAAVSPYSCYGG
             200           210       220        230       240      

NP_001 YSGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHGGQNATPQGHLAATLQGVRAW
        250       260       270       280       290       300 

>>NP_005512 (OMIM: 186770) T-cell leukemia homeobox prot  (330 aa)
 initn: 258 init1: 210 opt: 252  Z-score: 224.5  bits: 49.1 E(85289): 9.1e-06
Smith-Waterman score: 256; 37.4% identity (57.7% similar) in 163 aa overlap (25-178:154-298)

                     10        20        30          40         50 
pF1KB8       MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLP--ESGPGPTSP-LCALEEL
                                     .: .::.: .:  ..  : : : . . .. 
NP_005 GALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESNRRY
           130       140       150       160       170       180   

              60        70        80        90       100       110 
pF1KB8 TSKTFRGLDARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLA
       :.  : :      .: ..:. :          :..: ::.::  :. :::.::  :::::
NP_005 TKDRFTG------HPYQNRTPP----------KKKKPRTSFTRLQICELEKRFHRQKYLA
           190                       200       210       220       

             120       130       140             150       160     
pF1KB8 PSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMR------ADVASLRALSPEVLCSL
        .:: .::  : ...::: :::::::.: .:.. : :      :.   :.  .     ::
NP_005 SAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSL
       230       240       250       260       270       280       

         170       180       190                    
pF1KB8 ALPEGAPDPGLCLGPAGPDSRPHLSDEEIQVDD            
       : :  : :: ::.                                
NP_005 AQPLPA-DP-LCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE
       290         300       310       320       330

>>NP_066305 (OMIM: 604640) T-cell leukemia homeobox prot  (291 aa)
 initn: 272 init1: 228 opt: 249  Z-score: 222.7  bits: 48.6 E(85289): 1.2e-05
Smith-Waterman score: 249; 38.3% identity (55.7% similar) in 167 aa overlap (22-178:105-263)

                        10        20        30        40        50 
pF1KB8          MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPLCALEEL
                                     :  .:  ::.: .   : : . :   .:  
NP_066 SYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLG-GLNFPW--ME--
           80        90       100       110       120              

                 60          70        80        90       100      
pF1KB8 TSKTF---RGLDARALQP--SEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVF
       .:. :   :   : :: :     : :    .  :   ::.: ::.:.  :. :::.::  
NP_066 SSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTP--PKRKKPRTSFSRVQICELEKRFHR
     130       140       150       160         170       180       

        110       120       130       140          150         160 
pF1KB8 QKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMRA---DVAS--LRALSPEV
       ::::: .:: .::  : ...::: :::::::.: .:.. : :    . ::  .  :. ..
NP_066 QKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLMLQLQHDA
       190       200       210       220       230       240       

             170       180       190                
pF1KB8 LCSLALPEGAPDPGLCLGPAGPDSRPHLSDEEIQVDD        
       . .       ::: :::                            
NP_066 FQKSLNDSIQPDP-LCLHNSSLFALQNLQPWEEDSSKVPAVTSLV
       250       260        270       280       290 




198 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:21:23 2016 done: Fri Nov  4 16:21:24 2016
 Total Scan time:  7.310 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com