Result of FASTA (omim) for pF1KB8873
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8873, 162 aa
  1>>>pF1KB8873 162 - 162 aa - 162 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0203+/-0.000328; mu= 6.0317+/- 0.021
 mean_var=147.7242+/-28.473, 0's: 0 Z-trim(120.5): 38  B-trim: 52 in 2/53
 Lambda= 0.105523
 statistics sampled from 35789 (35831) to 35789 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.42), width:  16
 Scan time:  6.190

The best scores are:                                      opt bits E(85289)
NP_002350 (OMIM: 602020) transcription factor MafG ( 162)  998 162.3   3e-40
NP_116100 (OMIM: 602020) transcription factor MafG ( 162)  998 162.3   3e-40
XP_011521880 (OMIM: 602020) PREDICTED: transcripti ( 162)  998 162.3   3e-40
XP_005249908 (OMIM: 600197) PREDICTED: transcripti ( 156)  675 113.2 1.9e-25
XP_006715836 (OMIM: 600197) PREDICTED: transcripti ( 156)  675 113.2 1.9e-25
NP_002351 (OMIM: 600197) transcription factor MafK ( 156)  675 113.2 1.9e-25
NP_001155044 (OMIM: 604877) transcription factor M ( 164)  547 93.7 1.4e-19
NP_036455 (OMIM: 604877) transcription factor MafF ( 164)  547 93.7 1.4e-19
NP_001155045 (OMIM: 604877) transcription factor M ( 164)  547 93.7 1.4e-19
NP_001155046 (OMIM: 604877) transcription factor M ( 135)  469 81.7 4.6e-16
NP_005452 (OMIM: 166300,608968,617041) transcripti ( 323)  368 66.7 3.8e-11
NP_001026974 (OMIM: 177075,601088,610202) transcri ( 373)  348 63.7 3.4e-10
XP_016878723 (OMIM: 177075,601088,610202) PREDICTE ( 383)  348 63.7 3.5e-10
XP_016878722 (OMIM: 177075,601088,610202) PREDICTE ( 383)  348 63.7 3.5e-10
XP_016878724 (OMIM: 177075,601088,610202) PREDICTE ( 383)  348 63.7 3.5e-10
NP_005351 (OMIM: 177075,601088,610202) transcripti ( 403)  348 63.7 3.6e-10
NP_963883 (OMIM: 610303) transcription factor MafA ( 353)  344 63.1   5e-10
XP_016876839 (OMIM: 162080,613750) PREDICTED: neur ( 132)  278 52.7 2.6e-07
XP_011535108 (OMIM: 162080,613750) PREDICTED: neur ( 234)  278 52.9 3.9e-07
XP_005267766 (OMIM: 162080,613750) PREDICTED: neur ( 237)  278 52.9   4e-07
XP_005267767 (OMIM: 162080,613750) PREDICTED: neur ( 237)  278 52.9   4e-07
XP_011535106 (OMIM: 162080,613750) PREDICTED: neur ( 237)  278 52.9   4e-07
XP_011535107 (OMIM: 162080,613750) PREDICTED: neur ( 237)  278 52.9   4e-07
XP_011535104 (OMIM: 162080,613750) PREDICTED: neur ( 237)  278 52.9   4e-07
XP_005267765 (OMIM: 162080,613750) PREDICTED: neur ( 237)  278 52.9   4e-07
NP_006168 (OMIM: 162080,613750) neural retina-spec ( 237)  278 52.9   4e-07
XP_011535103 (OMIM: 162080,613750) PREDICTED: neur ( 339)  278 53.0 5.2e-07


>>NP_002350 (OMIM: 602020) transcription factor MafG [Ho  (162 aa)
 initn: 998 init1: 998 opt: 998  Z-score: 843.5  bits: 162.3 E(85289): 3e-40
Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
               70        80        90       100       110       120

              130       140       150       160  
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
       ::::::::::::::::::::::::::::::::::::::::::
NP_002 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
              130       140       150       160  

>>NP_116100 (OMIM: 602020) transcription factor MafG [Ho  (162 aa)
 initn: 998 init1: 998 opt: 998  Z-score: 843.5  bits: 162.3 E(85289): 3e-40
Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
               70        80        90       100       110       120

              130       140       150       160  
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
       ::::::::::::::::::::::::::::::::::::::::::
NP_116 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
              130       140       150       160  

>>XP_011521880 (OMIM: 602020) PREDICTED: transcription f  (162 aa)
 initn: 998 init1: 998 opt: 998  Z-score: 843.5  bits: 162.3 E(85289): 3e-40
Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
               70        80        90       100       110       120

              130       140       150       160  
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
       ::::::::::::::::::::::::::::::::::::::::::
XP_011 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
              130       140       150       160  

>>XP_005249908 (OMIM: 600197) PREDICTED: transcription f  (156 aa)
 initn: 675 init1: 675 opt: 675  Z-score: 578.0  bits: 113.2 E(85289): 1.9e-25
Smith-Waterman score: 694; 75.0% identity (86.5% similar) in 156 aa overlap (1-156:1-142)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       :::  : :::::::.: :::.  :.:.:::.:::::::::::::.:::...:::::::::
XP_005 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       :::::::::.::::::::::.:..:::::::::: ::.::.:::::::::::::::::::
XP_005 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
               70        80        90       100       110       120

              130       140       150       160          
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS        
       :::.::::.              :::.:::::::::              
XP_005 VARGPVAPS--------------KVATTSVITIVKSTELSSTSVPFSAAS
                            130       140       150      

>>XP_006715836 (OMIM: 600197) PREDICTED: transcription f  (156 aa)
 initn: 675 init1: 675 opt: 675  Z-score: 578.0  bits: 113.2 E(85289): 1.9e-25
Smith-Waterman score: 694; 75.0% identity (86.5% similar) in 156 aa overlap (1-156:1-142)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       :::  : :::::::.: :::.  :.:.:::.:::::::::::::.:::...:::::::::
XP_006 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       :::::::::.::::::::::.:..:::::::::: ::.::.:::::::::::::::::::
XP_006 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
               70        80        90       100       110       120

              130       140       150       160          
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS        
       :::.::::.              :::.:::::::::              
XP_006 VARGPVAPS--------------KVATTSVITIVKSTELSSTSVPFSAAS
                            130       140       150      

>>NP_002351 (OMIM: 600197) transcription factor MafK [Ho  (156 aa)
 initn: 675 init1: 675 opt: 675  Z-score: 578.0  bits: 113.2 E(85289): 1.9e-25
Smith-Waterman score: 694; 75.0% identity (86.5% similar) in 156 aa overlap (1-156:1-142)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       :::  : :::::::.: :::.  :.:.:::.:::::::::::::.:::...:::::::::
NP_002 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       :::::::::.::::::::::.:..:::::::::: ::.::.:::::::::::::::::::
NP_002 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
               70        80        90       100       110       120

              130       140       150       160          
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS        
       :::.::::.              :::.:::::::::              
NP_002 VARGPVAPS--------------KVATTSVITIVKSTELSSTSVPFSAAS
                            130       140       150      

>>NP_001155044 (OMIM: 604877) transcription factor MafF   (164 aa)
 initn: 568 init1: 532 opt: 547  Z-score: 472.4  bits: 93.7 E(85289): 1.4e-19
Smith-Waterman score: 564; 65.4% identity (80.1% similar) in 156 aa overlap (1-156:1-142)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       :..   ..::::.::: .::   :.:: :. .::::::.:::::: ::...:::::::::
NP_001 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       ::::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.
NP_001 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
               70        80        90       100       110       120

              130       140       150       160                  
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS                
       :     : ::::  : :       :: .::::::::                      
NP_001 V-----AAARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
                     130              140       150       160    

>>NP_036455 (OMIM: 604877) transcription factor MafF iso  (164 aa)
 initn: 568 init1: 532 opt: 547  Z-score: 472.4  bits: 93.7 E(85289): 1.4e-19
Smith-Waterman score: 564; 65.4% identity (80.1% similar) in 156 aa overlap (1-156:1-142)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       :..   ..::::.::: .::   :.:: :. .::::::.:::::: ::...:::::::::
NP_036 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       ::::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.
NP_036 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
               70        80        90       100       110       120

              130       140       150       160                  
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS                
       :     : ::::  : :       :: .::::::::                      
NP_036 V-----AAARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
                     130              140       150       160    

>>NP_001155045 (OMIM: 604877) transcription factor MafF   (164 aa)
 initn: 568 init1: 532 opt: 547  Z-score: 472.4  bits: 93.7 E(85289): 1.4e-19
Smith-Waterman score: 564; 65.4% identity (80.1% similar) in 156 aa overlap (1-156:1-142)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       :..   ..::::.::: .::   :.:: :. .::::::.:::::: ::...:::::::::
NP_001 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       ::::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.
NP_001 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
               70        80        90       100       110       120

              130       140       150       160                  
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS                
       :     : ::::  : :       :: .::::::::                      
NP_001 V-----AAARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
                     130              140       150       160    

>>NP_001155046 (OMIM: 604877) transcription factor MafF   (135 aa)
 initn: 493 init1: 457 opt: 469  Z-score: 409.3  bits: 81.7 E(85289): 4.6e-16
Smith-Waterman score: 486; 70.4% identity (82.4% similar) in 125 aa overlap (32-156:3-113)

              10        20        30        40        50        60 
pF1KB8 TTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLKN
                                     .::::::.:::::: ::...::::::::::
NP_001                             MGLSVRELNRHLRGLSAEEVTRLKQRRRTLKN
                                           10        20        30  

              70        80        90       100       110       120 
pF1KB8 RGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFARTV
       :::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.:
NP_001 RGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSV
             40        50        60        70        80        90  

             130       140       150       160                  
pF1KB8 ARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS                
       :      ::::  : :       :: .::::::::                      
NP_001 A-----AARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
                   100              110       120       130     




162 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:16:17 2016 done: Fri Nov  4 16:16:18 2016
 Total Scan time:  6.190 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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