Result of FASTA (ccds) for pF1KB8873
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8873, 162 aa
  1>>>pF1KB8873 162 - 162 aa - 162 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9053+/-0.000802; mu= 6.6521+/- 0.049
 mean_var=133.7490+/-26.087, 0's: 0 Z-trim(112.8): 20  B-trim: 101 in 1/52
 Lambda= 0.110899
 statistics sampled from 13511 (13526) to 13511 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.415), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS11793.1 MAFG gene_id:4097|Hs108|chr17          ( 162)  998 169.8 6.7e-43
CCDS5325.1 MAFK gene_id:7975|Hs108|chr7            ( 156)  675 118.1 2.3e-27
CCDS13968.1 MAFF gene_id:23764|Hs108|chr22         ( 164)  547 97.6 3.6e-21
CCDS54528.1 MAFF gene_id:23764|Hs108|chr22         ( 135)  469 85.1 1.8e-17
CCDS13311.1 MAFB gene_id:9935|Hs108|chr20          ( 323)  368 69.2 2.5e-12
CCDS42198.1 MAF gene_id:4094|Hs108|chr16           ( 373)  348 66.1 2.6e-11
CCDS10928.1 MAF gene_id:4094|Hs108|chr16           ( 403)  348 66.1 2.7e-11
CCDS34955.1 MAFA gene_id:389692|Hs108|chr8         ( 353)  344 65.4 3.8e-11


>>CCDS11793.1 MAFG gene_id:4097|Hs108|chr17               (162 aa)
 initn: 998 init1: 998 opt: 998  Z-score: 883.7  bits: 169.8 E(32554): 6.7e-43
Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
               70        80        90       100       110       120

              130       140       150       160  
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS11 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
              130       140       150       160  

>>CCDS5325.1 MAFK gene_id:7975|Hs108|chr7                 (156 aa)
 initn: 675 init1: 675 opt: 675  Z-score: 604.6  bits: 118.1 E(32554): 2.3e-27
Smith-Waterman score: 694; 75.0% identity (86.5% similar) in 156 aa overlap (1-156:1-142)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       :::  : :::::::.: :::.  :.:.:::.:::::::::::::.:::...:::::::::
CCDS53 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       :::::::::.::::::::::.:..:::::::::: ::.::.:::::::::::::::::::
CCDS53 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
               70        80        90       100       110       120

              130       140       150       160          
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS        
       :::.::::.              :::.:::::::::              
CCDS53 VARGPVAPS--------------KVATTSVITIVKSTELSSTSVPFSAAS
                            130       140       150      

>>CCDS13968.1 MAFF gene_id:23764|Hs108|chr22              (164 aa)
 initn: 568 init1: 532 opt: 547  Z-score: 493.6  bits: 97.6 E(32554): 3.6e-21
Smith-Waterman score: 564; 65.4% identity (80.1% similar) in 156 aa overlap (1-156:1-142)

               10        20        30        40        50        60
pF1KB8 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
       :..   ..::::.::: .::   :.:: :. .::::::.:::::: ::...:::::::::
CCDS13 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
       ::::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.
CCDS13 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
               70        80        90       100       110       120

              130       140       150       160                  
pF1KB8 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS                
       :     : ::::  : :       :: .::::::::                      
CCDS13 V-----AAARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
                     130              140       150       160    

>>CCDS54528.1 MAFF gene_id:23764|Hs108|chr22              (135 aa)
 initn: 493 init1: 457 opt: 469  Z-score: 427.3  bits: 85.1 E(32554): 1.8e-17
Smith-Waterman score: 486; 70.4% identity (82.4% similar) in 125 aa overlap (32-156:3-113)

              10        20        30        40        50        60 
pF1KB8 TTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLKN
                                     .::::::.:::::: ::...::::::::::
CCDS54                             MGLSVRELNRHLRGLSAEEVTRLKQRRRTLKN
                                           10        20        30  

              70        80        90       100       110       120 
pF1KB8 RGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFARTV
       :::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.:
CCDS54 RGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSV
             40        50        60        70        80        90  

             130       140       150       160                  
pF1KB8 ARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS                
       :      ::::  : :       :: .::::::::                      
CCDS54 A-----AARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
                   100              110       120       130     

>>CCDS13311.1 MAFB gene_id:9935|Hs108|chr20               (323 aa)
 initn: 362 init1: 330 opt: 368  Z-score: 334.8  bits: 69.2 E(32554): 2.5e-12
Smith-Waterman score: 368; 47.7% identity (72.7% similar) in 132 aa overlap (4-128:188-319)

                                          10        20           30
pF1KB8                            MTTPNKGNKALKVKREPGENGT---SLTDEELV
                                     :. : .:       : ::.    ..:..::
CCDS13 HAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHATASATAAGGNGSVEDRFSDDQLV
       160       170       180       190       200       210       

               40        50        60        70        80        90
pF1KB8 TMSVRELNQHLRGLSKEEIVQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEV
       .:::::::.::::..:.:...:::.:::::::::: ::: ::: ::..::..:..: :.:
CCDS13 SMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQV
       220       230       240       250       260       270       

              100       110           120       130       140      
pF1KB8 EKLASENASMKLELDALRSKYEALQT--F--ARTVARSPVAPARGPLAAGLGPLVPGKVA
       :.: .: . .  : :: . : : : .  :  : ... :: .:                  
CCDS13 EQLKQEVSRLARERDAYKVKCEKLANSGFREAGSTSDSPSSPEFFL              
       280       290       300       310       320                 

        150       160  
pF1KB8 ATSVITIVKSKTDARS

>>CCDS42198.1 MAF gene_id:4094|Hs108|chr16                (373 aa)
 initn: 382 init1: 345 opt: 348  Z-score: 316.6  bits: 66.1 E(32554): 2.6e-11
Smith-Waterman score: 348; 59.3% identity (83.5% similar) in 91 aa overlap (24-114:261-351)

                      10        20        30        40        50   
pF1KB8        MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLK
                                     ..::.::::::::::..:::.::::...::
CCDS42 GGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLK
              240       250       260       270       280       290

            60        70        80        90       100       110   
pF1KB8 QRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEA
       :.:::::::::: ::: ::: :.. ::..: .: :.:..: .: . .  : :: . ::: 
CCDS42 QKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEK
              300       310       320       330       340       350

           120       130       140       150       160  
pF1KB8 LQTFARTVARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
       :                                                
CCDS42 LVSSGFRENGSSSDNPSSPEFFM                          
              360       370                             

>>CCDS10928.1 MAF gene_id:4094|Hs108|chr16                (403 aa)
 initn: 382 init1: 345 opt: 348  Z-score: 316.2  bits: 66.1 E(32554): 2.7e-11
Smith-Waterman score: 348; 59.3% identity (83.5% similar) in 91 aa overlap (24-114:261-351)

                      10        20        30        40        50   
pF1KB8        MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLK
                                     ..::.::::::::::..:::.::::...::
CCDS10 GGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLK
              240       250       260       270       280       290

            60        70        80        90       100       110   
pF1KB8 QRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEA
       :.:::::::::: ::: ::: :.. ::..: .: :.:..: .: . .  : :: . ::: 
CCDS10 QKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEK
              300       310       320       330       340       350

           120       130       140       150       160      
pF1KB8 LQTFARTVARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS    
       :                                                    
CCDS10 LVSSGFRENGSSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
              360       370       380       390       400   

>>CCDS34955.1 MAFA gene_id:389692|Hs108|chr8              (353 aa)
 initn: 360 init1: 340 opt: 344  Z-score: 313.5  bits: 65.4 E(32554): 3.8e-11
Smith-Waterman score: 344; 48.7% identity (71.4% similar) in 119 aa overlap (24-135:227-345)

                      10        20        30        40        50   
pF1KB8        MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLK
                                     ..:..::.:::::::..:::.::::...::
CCDS34 AAHHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVRELNRQLRGFSKEEVIRLK
        200       210       220       230       240       250      

            60        70        80        90       100       110   
pF1KB8 QRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEA
       :.:::::::::: ::: ::: :.. ::..: .::..::.:  : . .  : :  . ::: 
CCDS34 QKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLEVGRLAKERDLYKEKYEK
        260       270       280       290       300       310      

                  120       130       140       150       160  
pF1KB8 L-------QTFARTVARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
       :       .. .    : :  :  :: .:                           
CCDS34 LAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL                   
        320       330       340       350                      




162 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:16:16 2016 done: Fri Nov  4 16:16:17 2016
 Total Scan time:  2.070 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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