Result of FASTA (ccds) for pF1KB8843
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8843, 496 aa
  1>>>pF1KB8843 496 - 496 aa - 496 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.0770+/-0.000955; mu= -10.7388+/- 0.057
 mean_var=447.8430+/-89.944, 0's: 0 Z-trim(117.8): 20  B-trim: 0 in 0/55
 Lambda= 0.060605
 statistics sampled from 18567 (18582) to 18567 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.571), width:  16
 Scan time:  4.430

The best scores are:                                      opt bits E(32554)
CCDS72874.1 ANKRD34A gene_id:284615|Hs108|chr1     ( 496) 3417 312.7 5.9e-85
CCDS53965.1 ANKRD34C gene_id:390616|Hs108|chr15    ( 535)  823 85.9 1.2e-16
CCDS34194.1 ANKRD34B gene_id:340120|Hs108|chr5     ( 514)  678 73.2 7.5e-13


>>CCDS72874.1 ANKRD34A gene_id:284615|Hs108|chr1          (496 aa)
 initn: 3417 init1: 3417 opt: 3417  Z-score: 1638.7  bits: 312.7 E(32554): 5.9e-85
Smith-Waterman score: 3417; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)

               10        20        30        40        50        60
pF1KB8 MLHTEGHALLRAVGQGKLRLARLLLEGGAYVNEGDAQGETALMAACRARYDDPQNKARMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MLHTEGHALLRAVGQGKLRLARLLLEGGAYVNEGDAQGETALMAACRARYDDPQNKARMV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RYLLEQGADPNIADRLGRTALMHACAGGGGAAVASLLLAHGADPSVRDHAGASALVHALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RYLLEQGADPNIADRLGRTALMHACAGGGGAAVASLLLAHGADPSVRDHAGASALVHALD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RGDRETLATLLDACKAKGTEVIIITTDTSPSGTKKTRQYLNSPPSPGVEDPAPASPSPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RGDRETLATLLDACKAKGTEVIIITTDTSPSGTKKTRQYLNSPPSPGVEDPAPASPSPGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CTSPSEIQLQTAGGGGRGMLSPRAQEEEEKRDVFEFPLPKPPDDPSPSEPLPKPPRHPPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CTSPSEIQLQTAGGGGRGMLSPRAQEEEEKRDVFEFPLPKPPDDPSPSEPLPKPPRHPPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PLKRLNSEPWGLVAPPQPVPPTEGRPGIERLTAEFNGLTLTGRPRLSRRHSTEGPEDPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PLKRLNSEPWGLVAPPQPVPPTEGRPGIERLTAEFNGLTLTGRPRLSRRHSTEGPEDPPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 WAEKVTSGGPLSRRNTAPEAQESGPPSGLRQKLSRMEPVELDTPGHLCPDSPESSRLSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 WAEKVTSGGPLSRRNTAPEAQESGPPSGLRQKLSRMEPVELDTPGHLCPDSPESSRLSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 RRRYSASPLTLPPAGSAPSPRQSQESLPGAVSPLSGRRRSPGLLERRGSGTLLLDHISQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RRRYSASPLTLPPAGSAPSPRQSQESLPGAVSPLSGRRRSPGLLERRGSGTLLLDHISQT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 RPGFLPPLNVSPHPPIPDIRPQPGGRAPSLPAPPYAGAPGSPRTKRKLVRRHSMQTEQIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RPGFLPPLNVSPHPPIPDIRPQPGGRAPSLPAPPYAGAPGSPRTKRKLVRRHSMQTEQIR
              430       440       450       460       470       480

              490      
pF1KB8 LLGGFQSLGGPGEPGR
       ::::::::::::::::
CCDS72 LLGGFQSLGGPGEPGR
              490      

>>CCDS53965.1 ANKRD34C gene_id:390616|Hs108|chr15         (535 aa)
 initn: 925 init1: 482 opt: 823  Z-score: 412.5  bits: 85.9 E(32554): 1.2e-16
Smith-Waterman score: 1205; 44.1% identity (65.3% similar) in 547 aa overlap (2-488:8-533)

                     10        20        30        40        50    
pF1KB8       MLHTEGHALLRAVGQGKLRLARLLLEGGAYVNEGDAQGETALMAACRARYDDPQ
              :.:.:..::.::  :.:::.:::::::::.::.. .::::::.:: ... : :
CCDS53 MMDDDTELRTDGNSLLKAVWLGRLRLTRLLLEGGAYINESNDKGETALMVACITKHVDQQ
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB8 N--KARMVRYLLEQGADPNIADRLGRTALMHACAGGGGAAVASLLLAHGADPSVRDHAGA
       .  :..::.:::.. ::::: :. :.:::.:::   .:. :.:::: .:::::..:..::
CCDS53 SISKSKMVKYLLDNRADPNIQDKSGKTALIHACIRRAGGEVVSLLLENGADPSLEDRTGA
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB8 SALVHALDRGDRETLATLLDACKAKGTEVIIITTDTSPSGTKKTRQYLNSPPSPGVEDPA
       ::::.:..  :...:  ::::::::: :::::::: : :::: :.:::: :::: :::  
CCDS53 SALVYAINADDKDALKHLLDACKAKGKEVIIITTDKSSSGTKTTKQYLNVPPSPKVED--
              130       140       150       160       170          

            180       190       200       210       220            
pF1KB8 PASPSPGFCTSPSEIQLQTAGGGGRGMLSPRAQEEEEKRDVFEFPLPKPP--------DD
           :: .:.:::.:.:.. :     . :: ...:.   : : .   .:         ..
CCDS53 --RHSPPLCASPSDIELKALG-----LDSPLTEKED---DFFSLQAGHPSSCNTSKAVNE
        180       190            200          210       220        

           230       240       250       260            270        
pF1KB8 P-SPSEPLPKPPRHPPKPLKRLNSEPWGLVAPPQPVPPTE-----GRPGIERLTAEFNGL
       : ::.. . .  :     ::::.::::::.::   .  :.     :    ...   .. .
CCDS53 PGSPTRKVSNLKRARLPQLKRLQSEPWGLIAPSVLAASTRQDETHGASTDNEVIKSISDI
      230       240       250       260       270       280        

      280       290                         300        310         
pF1KB8 TLTGRPRLSRRHSTEGPED------------------PPPWAEKVTSG-GP---LSRRNT
       ..  :  ::: .: .. .                   :  :     .: .:   :.::.:
CCDS53 SFPKRGPLSRTNSIDSKDPTLFHTVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGT
      290       300       310       320       330       340        

        320            330           340        350            360 
pF1KB8 APEAQES---GP--PSGLRQ--KLSRMEP--VELDT-PGHLCPDSP-----ESSRLSLER
        :  ::.   ::  ::.:..  .:. .:    .::  ::   :: :     ::..  :.:
CCDS53 LPVDQEKCGMGPSGPSALKEPASLKWLENDLYDLDIQPG---PDPPNSISLESGKGPLDR
      350       360       370       380          390       400     

             370       380       390       400       410       420 
pF1KB8 RRYSASPLTLPPAGSAPSPRQSQESLPGAVSPLSGRRRSPGLLERRGSGTLLLDHISQTR
       .. ..: :.:   ::    :.: ...: ..:: :.::: : :::::::::::::.::.::
CCDS53 KKLNSSHLSLFH-GS----RESLDTVP-STSPSSARRRPPHLLERRGSGTLLLDRISHTR
         410            420        430       440       450         

             430       440         450       460            470    
pF1KB8 PGFLPPLNVSPHPPIPDIRP--QPGGRAPSLPAPPYAGAPGSP-----RTKRKLVRRHSM
       :::::::::. .:::::::   .:.    :        ::.::     :.:.::.:::::
CCDS53 PGFLPPLNVNLNPPIPDIRSSSKPSCSLASGLKSMVPVAPSSPKRVDLRSKKKLLRRHSM
     460       470       480       490       500       510         

          480       490      
pF1KB8 QTEQIRLLGGFQSLGGPGEPGR
       : ::.. :. :. .        
CCDS53 QIEQMKQLSDFEEIMT      
     520       530           

>>CCDS34194.1 ANKRD34B gene_id:340120|Hs108|chr5          (514 aa)
 initn: 626 init1: 419 opt: 678  Z-score: 344.2  bits: 73.2 E(32554): 7.5e-13
Smith-Waterman score: 944; 40.0% identity (60.7% similar) in 535 aa overlap (2-485:7-514)

                    10        20        30        40        50     
pF1KB8      MLHTEGHALLRAVGQGKLRLARLLLEGGAYVNEGDAQGETALMAACRARYDDPQN
             . .::..:..:: :..:::.:::::::::.::.. .::: :: ::.... : :.
CCDS34 MDEGMEISSEGNSLIKAVHQSRLRLTRLLLEGGAYINESNDRGETPLMIACKTKHVDHQS
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB8 --KARMVRYLLEQGADPNIADRLGRTALMHACAGGGGAAVASLLLAHGADPSVRDHAGAS
         ::.::.::::..::::: :. :.:::::::   .:  :.::::  ::: :..::.. :
CCDS34 VSKAKMVKYLLENNADPNIQDKSGKTALMHACLEKAGPEVVSLLLKSGADLSLQDHSSYS
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB8 ALVHALDRGDRETLATLLDACKAKGTEVIIITTDTSPSGTKKTRQYLNSPPSPGVEDPAP
       :::.:..  : ::: .::.:::::: :::::::   : : . :.:::: ::   :.    
CCDS34 ALVYAINSEDTETLKVLLSACKAKGKEVIIITTAKLPCGKHTTKQYLNMPP---VD--ID
              130       140       150       160       170          

           180       190       200       210          220          
pF1KB8 ASPSPGFCTSPSEIQLQTAGGGGRGMLSPRAQEEEEKRDVFEFP---LPKPPDDP-SPSE
       .  ::. ::.::::...::.       :: ..  : .  .: :    :    ::  .:. 
CCDS34 GCHSPATCTTPSEIDIKTAS-------SPLSHSSETELTLFGFKDLELAGSNDDTWDPGS
         180       190              200       210       220        

     230       240       250       260                270       280
pF1KB8 PLPKPPRHPPKPLKRLNSEPWGLVAPPQPVPPT------EGRPGI---ERLTAEFNGLTL
       :. ::   :  : :  .. :: . .::  .  .      :    :   :.:. . :::.:
CCDS34 PVRKPALAPKGP-KLPHAPPW-VKSPPLLMHQNRVASLQEELQDITPEEELSYKTNGLAL
      230       240         250       260       270       280      

              290       300       310       320       330       340
pF1KB8 TGRPRLSRRHSTEGPEDPPPWAEKVTSGGPLSRRNTAPEAQESGPPSGLRQKLSRMEPVE
       .   :.  ::..   .:     .   ...  ::. .  : . ..  :   :.  .. ::.
CCDS34 S--KRFITRHQSIDVKDTAHLLRAFDQAS--SRKMSYDEINCQSYLSEGNQQCIEV-PVD
          290       300       310         320       330        340 

              350           360              370                   
pF1KB8 LDTPGHLCPDSPES---SRL-SLERRR------YSA-SPLT---LPPA---GSA------
        :      ::: ..   : : :. ..:      ::. : :.    ::.   :.:      
CCDS34 QD------PDSNQTIFASTLRSIVQKRNLGANHYSSDSQLSAGLTPPTSEDGKALIGKKK
                   350       360       370       380       390     

          380         390       400       410        420       430 
pF1KB8 ---PSPRQSQES--LPGAVSPLSGRRRSPGLLERRGSGTLLLDH-ISQTRPGFLPPLNVS
          ::: : .::  :   . :    ::. ..:::::::.. ::: ..::: ::::::::.
CCDS34 ILSPSPSQLSESKELLENIPPGPLSRRNHAVLERRGSGAFPLDHSVTQTRQGFLPPLNVN
         400       410       420       430       440       450     

             440              450       460       470       480    
pF1KB8 PHPPIPDIRPQPG-------GRAPSLPAPPYAGAPGSPRTKRKLVRRHSMQTEQIRLLGG
        :::: ::  .         :.   .:. :    :   ..:. :.::.:.:::::. : .
CCDS34 SHPPISDINVNNKICSLLSCGQKVLMPTVPI--FPKEFKSKKMLLRRQSLQTEQIKQLVN
         460       470       480         490       500       510   

          490      
pF1KB8 FQSLGGPGEPGR
       :           
CCDS34 F           
                   




496 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:03:22 2016 done: Fri Nov  4 16:03:23 2016
 Total Scan time:  4.430 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com