FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8837, 463 aa
  1>>>pF1KB8837 463 - 463 aa - 463 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9386+/-0.000776; mu= 15.5485+/- 0.047
 mean_var=87.3193+/-17.709, 0's: 0 Z-trim(110.0): 5  B-trim: 91 in 2/49
 Lambda= 0.137252
 statistics sampled from 11264 (11268) to 11264 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.346), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS12629.1 IRGC gene_id:56269|Hs108|chr19         ( 463) 3024 608.6 4.4e-174
CCDS47313.1 IRGM gene_id:345611|Hs108|chr5         ( 181)  300 68.9 4.9e-12


>>CCDS12629.1 IRGC gene_id:56269|Hs108|chr19              (463 aa)
 initn: 3024 init1: 3024 opt: 3024  Z-score: 3238.8  bits: 608.6 E(32554): 4.4e-174
Smith-Waterman score: 3024; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463)

               10        20        30        40        50        60
pF1KB8 MATSKLPVVPGEEENTILMAKERLEALRTAFESGDLPQAASHLQELLASTESIRLEVGVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MATSKLPVVPGEEENTILMAKERLEALRTAFESGDLPQAASHLQELLASTESIRLEVGVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSPGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSPGC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATRTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATRTQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNLSPARYDFPTLVSTWEHDLPSHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNLSPARYDFPTLVSTWEHDLPSHR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQALPVPGLAAAYDDALLIHSLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQALPVPGLAAAYDDALLIHSLRG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 YHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSDGAMRVARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSDGAMRVARA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 FERGIPVFGTLVAGGISFGAVYTMLQGCLNEMAEDAQRVRIKALEDDEPQPEVSLEVASD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FERGIPVFGTLVAGGISFGAVYTMLQGCLNEMAEDAQRVRIKALEDDEPQPEVSLEVASD
              370       380       390       400       410       420

              430       440       450       460   
pF1KB8 NGVEKGGSGEGGGEEAPLSTCRKLGLLLKYILDSWKKHDSEEK
       :::::::::::::::::::::::::::::::::::::::::::
CCDS12 NGVEKGGSGEGGGEEAPLSTCRKLGLLLKYILDSWKKHDSEEK
              430       440       450       460   

>>CCDS47313.1 IRGM gene_id:345611|Hs108|chr5              (181 aa)
 initn: 320 init1: 240 opt: 300  Z-score: 329.6  bits: 68.9 E(32554): 4.9e-12
Smith-Waterman score: 300; 32.4% identity (65.4% similar) in 188 aa overlap (24-209:1-180)

               10        20          30        40        50        
pF1KB8 MATSKLPVVPGEEENTILMAKERLEALRT--AFESGDLPQAASHLQELLASTESIRLEVG
                              .::. .  :  .:.::.. :...: :  .    ... 
CCDS47                        MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNIT
                                      10        20        30       

       60        70        80        90       100       110        
pF1KB8 VTGESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSP
       ..:.:: : :..:.:::.   :  ..  : ....:.. . :   .: .:.::::::.:: 
CCDS47 MAGDSGNGMSTFISALRNTGHEGKASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSA
        40        50        60        70        80        90       

      120       130       140       150       160       170        
pF1KB8 GCPADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATR
           ..:: ...:.:::: ..:.  . .  .. ::     .:::::.: ::.: ::..  
CCDS47 TTTLENYLMEMQFNRYDF-IMVASAQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLST--
       100       110        120       130       140       150      

      180       190       200       210       220       230        
pF1KB8 TQRPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNLSPARYDFPTLVSTWEHDLPS
           ... :. .:: ::..  : :..  : .                             
CCDS47 ----GALPEVQLLQ-IRENVLENLQKERVCEY                            
              160        170       180                             

      240       250       260       270       280       290        
pF1KB8 HRRHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQALPVPGLAAAYDDALLIHSL




463 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:59:43 2016 done: Fri Nov  4 15:59:44 2016
 Total Scan time:  3.550 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]