hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080306/iprscan-20080306-04563223/chunk_1/iprscan-20080306-04563223.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB8823 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00001.12.fs 7 transmembrane receptor (rhodopsin family) 272.5 1.4e-90 1 PF00001.12.ls 7 transmembrane receptor (rhodopsin family) 274.4 2.1e-79 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00001.12.fs 1/1 70 320 .. 1 272 [] 272.5 1.4e-90 PF00001.12.ls 1/1 70 320 .. 1 272 [] 274.4 2.1e-79 Alignments of top-scoring domains: PF00001.12.fs: domain 1 of 1, from 70 to 320: score 272.5, E = 1.4e-90 *->GNlLVilvilrtkklr.tptnifilNLAvADLLflltlppwalyylv +NlLVi+v +r + r +n++ilN+A+ADL ++l+lp+w+l + pF1KB8823 70 ENLLVICVNWR-GSGRaGLMNLYILNMAIADLGIVLSLPVWMLEVTL 115 ggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrr ++W +Gs+ C++++++++vnmy+Si++L+++S+DRY++ + + ++ r pF1KB8823 116 D-YTWLWGSFSCRFTHYFYFVNMYSSIFFLVCLSVDRYVTLTSASPSWQR 164 rtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidf +r+ +++++++Wvl++++ lP +++ ++ +e+ +Cl++ pF1KB8823 165 YQ-HRVRRAMCAGIWVLSAIIPLPEVVHIQLVEGPEP-------MCLFMA 206 pevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkga p+++ ++tw +++al+ t++gF+lP+ +i+v++ +++++lr+ + pF1KB8823 207 PFET---YSTWALAVALSTTILGFLLPFPLITVFNVLTACRLRQPGQ--- 250 skkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCe k r+ + +l+++v vFv CWlPy+++lll tl++++i s++C pF1KB8823 251 -----PKSRRHCLLLCAYVAVFVMCWLPYHVTLLLLTLHgTHI--SLHCH 293 lervlptallvtlwLayvNsclNPiIY<-* l ++l ++++v+ +++++++++NPi+Y pF1KB8823 294 LVHLLYFFYDVIDCFSMLHCVINPILY 320 PF00001.12.ls: domain 1 of 1, from 70 to 320: score 274.4, E = 2.1e-79 *->GNlLVilvilrtkklr.tptnifilNLAvADLLflltlppwalyylv +NlLVi+v +r + r +n++ilN+A+ADL ++l+lp+w+l + pF1KB8823 70 ENLLVICVNWR-GSGRaGLMNLYILNMAIADLGIVLSLPVWMLEVTL 115 ggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrr ++W +Gs+ C++++++++vnmy+Si++L+++S+DRY++ + + ++ r pF1KB8823 116 D-YTWLWGSFSCRFTHYFYFVNMYSSIFFLVCLSVDRYVTLTSASPSWQR 164 rtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidf +r+ +++++++Wvl++++ lP +++ ++ +e+ +Cl++ pF1KB8823 165 YQ-HRVRRAMCAGIWVLSAIIPLPEVVHIQLVEGPEP-------MCLFMA 206 pevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkga p+++ ++tw +++al+ t++gF+lP+ +i+v++ +++++lr+ + pF1KB8823 207 PFET---YSTWALAVALSTTILGFLLPFPLITVFNVLTACRLRQPGQ--- 250 skkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCe k r+ + +l+++v vFv CWlPy+++lll tl++++i s++C pF1KB8823 251 -----PKSRRHCLLLCAYVAVFVMCWLPYHVTLLLLTLHgTHI--SLHCH 293 lervlptallvtlwLayvNsclNPiIY<-* l ++l ++++v+ +++++++++NPi+Y pF1KB8823 294 LVHLLYFFYDVIDCFSMLHCVINPILY 320 //