Result of FASTA (ccds) for pF1KB8786
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8786, 297 aa
  1>>>pF1KB8786 297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5534+/-0.00135; mu= 14.4714+/- 0.079
 mean_var=265.0492+/-122.882, 0's: 0 Z-trim(101.4): 209  B-trim: 847 in 2/44
 Lambda= 0.078779
 statistics sampled from 6161 (6511) to 6161 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.535), E-opt: 0.2 (0.2), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS11869.1 MC2R gene_id:4158|Hs108|chr18          ( 297) 1960 237.1 1.2e-62
CCDS11868.1 MC5R gene_id:4161|Hs108|chr18          ( 325)  942 121.5 8.5e-28
CCDS11976.1 MC4R gene_id:4160|Hs108|chr18          ( 332)  934 120.6 1.6e-27
CCDS56011.1 MC1R gene_id:4157|Hs108|chr16          ( 317)  750 99.6 3.1e-21
CCDS13449.2 MC3R gene_id:4159|Hs108|chr20          ( 323)  583 80.7 1.6e-15


>>CCDS11869.1 MC2R gene_id:4158|Hs108|chr18               (297 aa)
 initn: 1960 init1: 1960 opt: 1960  Z-score: 1238.1  bits: 237.1 E(32554): 1.2e-62
Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KB8 MKHIINSYENINNTARNNSDCPRVVLPEEIFFTISIVGVLENLIVLLAVFKNKNLQAPMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKHIINSYENINNTARNNSDCPRVVLPEEIFFTISIVGVLENLIVLLAVFKNKNLQAPMY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FFICSLAISDMLGSLYKILENILIILRNMGYLKPRGSFETTADDIIDSLFVLSLLGSIFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FFICSLAISDMLGSLYKILENILIILRNMGYLKPRGSFETTADDIIDSLFVLSLLGSIFS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LSVIAADRYITIFHALRYHSIVTMRRTVVVLTVIWTFCTGTGITMVIFSHHVPTVITFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSVIAADRYITIFHALRYHSIVTMRRTVVVLTVIWTFCTGTGITMVIFSHHVPTVITFTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LFPLMLVFILCLYVHMFLLARSHTRKISTLPRANMKGAITLTILLGVFIFCWAPFVLHVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LFPLMLVFILCLYVHMFLLARSHTRKISTLPRANMKGAITLTILLGVFIFCWAPFVLHVL
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KB8 LMTFCPSNPYCACYMSLFQVNGMLIMCNAVIDPFIYAFRSPELRDAFKKMIFCSRYW
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LMTFCPSNPYCACYMSLFQVNGMLIMCNAVIDPFIYAFRSPELRDAFKKMIFCSRYW
              250       260       270       280       290       

>>CCDS11868.1 MC5R gene_id:4161|Hs108|chr18               (325 aa)
 initn: 930 init1: 559 opt: 942  Z-score: 612.5  bits: 121.5 E(32554): 8.5e-28
Smith-Waterman score: 942; 46.5% identity (77.8% similar) in 288 aa overlap (13-293:25-312)

                           10        20        30        40        
pF1KB8             MKHIINSYENINNTARNNSDCPRVVLPEEIFFTISIVGVLENLIVLLA
                               :.  ..: :  . .  :.:.:......:::..:. :
CCDS11 MNSSFHLHFLDLNLNATEGNLSGPNVKNKSSPCEDMGIAVEVFLTLGVISLLENILVIGA
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KB8 VFKNKNLQAPMYFFICSLAISDMLGSLYKILENILIILRNMGYLKPRGSFETTADDIIDS
       . :::::..:::::.::::..::: :. .  :.: : : :  .:    .:    :...::
CCDS11 IVKNKNLHSPMYFFVCSLAVADMLVSMSSAWETITIYLLNNKHLVIADAFVRHIDNVFDS
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KB8 LFVLSLLGSIFSLSVIAADRYITIFHALRYHSIVTMRRTVVVLTVIWTFCTGTGITMVIF
       .. .:...:. :: .::.:::.:::.::::: :.: ::. .... ::.:::: ::.....
CCDS11 MICISVVASMCSLLAIAVDRYVTIFYALRYHHIMTARRSGAIIAGIWAFCTGCGIVFILY
              130       140       150       160       170       180

      170       180       190       200       210              220 
pF1KB8 SHHVPTVITFTSLFPLMLVFILCLYVHMFLLARSHTRKISTLP-------RANMKGAITL
       :. . ... . :.:  :: ... ::.:::::::.:...:..::       :..:.::.:.
CCDS11 SESTYVILCLISMFFAMLFLLVSLYIHMFLLARTHVKRIAALPGASSARQRTSMQGAVTV
              190       200       210       220       230       240

             230       240       250       260       270       280 
pF1KB8 TILLGVFIFCWAPFVLHVLLMTFCPSNPYCACYMSLFQVNGMLIMCNAVIDPFIYAFRSP
       :.:::::  ::::: ::. ::  ::.: ::. .:: :..  .:::::.:.::.:::::: 
CCDS11 TMLLGVFTVCWAPFFLHLTLMLSCPQNLYCSRFMSHFNMYLILIMCNSVMDPLIYAFRSQ
              250       260       270       280       290       300

             290                
pF1KB8 ELRDAFKKMIFCSRYW         
       :.: .::..: :             
CCDS11 EMRKTFKEIICCRGFRIACSFPRRD
              310       320     

>>CCDS11976.1 MC4R gene_id:4160|Hs108|chr18               (332 aa)
 initn: 950 init1: 397 opt: 934  Z-score: 607.6  bits: 120.6 E(32554): 1.6e-27
Smith-Waterman score: 934; 47.3% identity (77.7% similar) in 296 aa overlap (6-293:26-319)

                                   10        20         30         
pF1KB8                     MKHIINSYENINNTARNNSDC-PRVVLPEEIFFTISIVGV
                                :. :.... . ... :  .. .  :.: :......
CCDS11 MVNSTHRGMHTSLHLWNRSSYRLHSNASESLGK-GYSDGGCYEQLFVSPEVFVTLGVISL
               10        20        30         40        50         

      40        50        60        70        80        90         
pF1KB8 LENLIVLLAVFKNKNLQAPMYFFICSLAISDMLGSLYKILENILIILRNMGYLKPRGSFE
       :::..:..:. :::::..::::::::::..::: :. .  :.:.: : :      . :: 
CCDS11 LENILVIVAIAKNKNLHSPMYFFICSLAVADMLVSVSNGSETIVITLLNSTDTDAQ-SFT
      60        70        80        90       100       110         

     100       110       120       130       140       150         
pF1KB8 TTADDIIDSLFVLSLLGSIFSLSVIAADRYITIFHALRYHSIVTMRRTVVVLTVIWTFCT
       .. :..:::..  :::.:: ::  ::.:::.:::.::.::.:.:..:. .... ::. ::
CCDS11 VNIDNVIDSVICSSLLASICSLLSIAVDRYFTIFYALQYHNIMTVKRVGIIISCIWAACT
      120       130       140       150       160       170        

     160       170       180       190       200       210         
pF1KB8 GTGITMVIFSHHVPTVITFTSLFPLMLVFILCLYVHMFLLARSHTRKISTLPR-------
        .:: ..:.:    ..: . ..:  ::...  :::::::.:: : ..:..::        
CCDS11 VSGILFIIYSDSSAVIICLITMFFTMLALMASLYVHMFLMARLHIKRIAVLPGTGAIRQG
      180       190       200       210       220       230        

            220       230       240       250       260       270  
pF1KB8 ANMKGAITLTILLGVFIFCWAPFVLHVLLMTFCPSNPYCACYMSLFQVNGMLIMCNAVID
       ::::::::::::.:::. ::::: ::....  ::.::::.:.:: :..  .:::::..::
CCDS11 ANMKGAITLTILIGVFVVCWAPFFLHLIFYISCPQNPYCVCFMSHFNLYLILIMCNSIID
      240       250       260       270       280       290        

            280       290                
pF1KB8 PFIYAFRSPELRDAFKKMIFCSRYW         
       :.:::.:: ::: .::..: :             
CCDS11 PLIYALRSQELRKTFKEIICCYPLGGLCDLSSRY
      300       310       320       330  

>>CCDS56011.1 MC1R gene_id:4157|Hs108|chr16               (317 aa)
 initn: 773 init1: 390 opt: 750  Z-score: 494.7  bits: 99.6 E(32554): 3.1e-21
Smith-Waterman score: 750; 40.7% identity (73.0% similar) in 285 aa overlap (21-297:35-317)

                         10        20        30        40        50
pF1KB8           MKHIINSYENINNTARNNSDCPRVVLPEEIFFTISIVGVLENLIVLLAVF
                                     : .: . . .:.....:...:: .:. .. 
CCDS56 GSQRRLLGSLNSTPTAIPQLGLAANQTGARCLEVSISDGLFLSLGLVSLVENALVVATIA
           10        20        30        40        50        60    

               60        70        80        90       100       110
pF1KB8 KNKNLQAPMYFFICSLAISDMLGSLYKILENILIILRNMGYLKPRGSFETTADDIIDSLF
       ::.::..::: ::: ::.::.: :  ..::. .:.: . : :  :..     :..:: . 
CCDS56 KNRNLHSPMYCFICCLALSDLLVSGSNVLETAVILLLEAGALVARAAVLQQLDNVIDVIT
           70        80        90       100       110       120    

              120       130       140       150       160       170
pF1KB8 VLSLLGSIFSLSVIAADRYITIFHALRYHSIVTMRRTVVVLTVIWTFCTGTGITMVIFSH
         :.:.:.  :..::.::::.::.:::::::::. :.  ....::.  .  .  .. .  
CCDS56 CSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAVAAIWVASVVFSTLFIAYYD
          130       140       150       160       170       180    

              180       190       200       210               220  
pF1KB8 HVPTVITFTSLFPLMLVFILCLYVHMFLLARSHTRKISTLPRAN--------MKGAITLT
       :: ... .. .:  :::..  :::::.  : .:.. :. : . .        .:::.:::
CCDS56 HVAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPVHQGFGLKGAVTLT
          190       200       210       220       230       240    

            230       240       250       260       270       280  
pF1KB8 ILLGVFIFCWAPFVLHVLLMTFCPSNPYCACYMSLFQVNGMLIMCNAVIDPFIYAFRSPE
       ::::.:..::.:: ::. :...:: .: :.: .. :..   ::.:::.:::.::::.: :
CCDS56 ILLGIFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIICNAIIDPLIYAFHSQE
          250       260       270       280       290       300    

            290       
pF1KB8 LRDAFKKMIFCSRYW
       :: ..:... ::  :
CCDS56 LRRTLKEVLTCS--W
          310         

>>CCDS13449.2 MC3R gene_id:4159|Hs108|chr20               (323 aa)
 initn: 951 init1: 583 opt: 583  Z-score: 392.1  bits: 80.7 E(32554): 1.6e-15
Smith-Waterman score: 940; 47.9% identity (79.8% similar) in 282 aa overlap (21-293:35-315)

                         10        20        30        40        50
pF1KB8           MKHIINSYENINNTARNNSDCPRVVLPEEIFFTISIVGVLENLIVLLAVF
                                     : .: .  :.:....::..:::..:.::: 
CCDS13 CCLPSVQPTLPNGSEHLQAPFFSNQSSSAFCEQVFIKPEVFLSLGIVSLLENILVILAVV
           10        20        30        40        50        60    

               60        70        80        90       100       110
pF1KB8 KNKNLQAPMYFFICSLAISDMLGSLYKILENILIILRNMGYLKPRGSFETTADDIIDSLF
       .: ::..:::::.::::..::: :. . ::.:.: . .  ::  . .:    :.:.::..
CCDS13 RNGNLHSPMYFFLCSLAVADMLVSVSNALETIMIAIVHSDYLTFEDQFIQHMDNIFDSMI
           70        80        90       100       110       120    

              120       130       140       150       160       170
pF1KB8 VLSLLGSIFSLSVIAADRYITIFHALRYHSIVTMRRTVVVLTVIWTFCTGTGITMVIFSH
        .::..:: .: .::.:::.:::.:::::::.:.:........::. :   :......:.
CCDS13 CISLVASICNLLAIAVDRYVTIFYALRYHSIMTVRKALTLIVAIWVCCGVCGVVFIVYSE
          130       140       150       160       170       180    

              180       190       200       210                220 
pF1KB8 HVPTVITFTSLFPLMLVFILCLYVHMFLLARSHTRKISTLPRAN---------MKGAITL
          ... . ..:  :....  :::::::.:: :...:..:: :.         ::::.:.
CCDS13 SKMVIVCLITMFFAMMLLMGTLYVHMFLFARLHVKRIAALPPADGVAPQQHSCMKGAVTI
          190       200       210       220       230       240    

             230       240       250       260       270       280 
pF1KB8 TILLGVFIFCWAPFVLHVLLMTFCPSNPYCACYMSLFQVNGMLIMCNAVIDPFIYAFRSP
       :::::::::::::: ::..:.  ::.:::: :: . :..  .:::::.::::.:::::: 
CCDS13 TILLGVFIFCWAPFFLHLVLIITCPTNPYCICYTAHFNTYLVLIMCNSVIDPLIYAFRSL
          250       260       270       280       290       300    

             290           
pF1KB8 ELRDAFKKMIFCSRYW    
       :::..:.. :.:        
CCDS13 ELRNTFRE-ILCGCNGMNLG
          310        320   




297 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:36:43 2016 done: Fri Nov  4 15:36:44 2016
 Total Scan time:  2.250 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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