Result of FASTA (ccds) for pF1KB8766
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8766, 225 aa
  1>>>pF1KB8766 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5808+/-0.00101; mu= 12.4238+/- 0.061
 mean_var=71.1667+/-14.813, 0's: 0 Z-trim(104.5): 47  B-trim: 0 in 0/48
 Lambda= 0.152032
 statistics sampled from 7887 (7931) to 7887 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.244), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS60908.1 KCTD14 gene_id:65987|Hs108|chr11       ( 225) 1493 336.6 7.7e-93
CCDS8255.2 KCTD14 gene_id:65987|Hs108|chr11        ( 255) 1493 336.6 8.6e-93
CCDS55117.1 KCTD7 gene_id:154881|Hs108|chr7        ( 288)  376 91.7 5.4e-19
CCDS5534.1 KCTD7 gene_id:154881|Hs108|chr7         ( 289)  376 91.7 5.4e-19
CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3         ( 237)  264 67.1 1.1e-11
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11      ( 260)  254 64.9 5.6e-11


>>CCDS60908.1 KCTD14 gene_id:65987|Hs108|chr11            (225 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1780.2  bits: 336.6 E(32554): 7.7e-93
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KB8 MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDRPSTYFRPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDRPSTYFRPIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DYLRTGQVPTQHIPEVYREAQFYEIKPLVKLLEDMPQIFGEQVSRKQFLLQVPGYSENLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DYLRTGQVPTQHIPEVYREAQFYEIKPLVKLLEDMPQIFGEQVSRKQFLLQVPGYSENLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LMVRLARAEAITARKSSVLVCLVETEEQDAYYSEVLCFLQDKKMFKSVVKFGPWKAVLDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LMVRLARAEAITARKSSVLVCLVETEEQDAYYSEVLCFLQDKKMFKSVVKFGPWKAVLDN
              130       140       150       160       170       180

              190       200       210       220     
pF1KB8 SDLMHCLEMDIKAQGYKVFSKFYLTYPTKRNEFHFNIYSFTFTWW
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SDLMHCLEMDIKAQGYKVFSKFYLTYPTKRNEFHFNIYSFTFTWW
              190       200       210       220     

>>CCDS8255.2 KCTD14 gene_id:65987|Hs108|chr11             (255 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1779.4  bits: 336.6 E(32554): 8.6e-93
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:31-255)

                                             10        20        30
pF1KB8                               MSTVVELNVGGEFHTTTLGTLRKFPGSKLA
                                     ::::::::::::::::::::::::::::::
CCDS82 MWQGCAVERPVGRMTSQTPLPQSPRPRRPTMSTVVELNVGGEFHTTTLGTLRKFPGSKLA
               10        20        30        40        50        60

               40        50        60        70        80        90
pF1KB8 EMFSSLAKASTDAEGRFFIDRPSTYFRPILDYLRTGQVPTQHIPEVYREAQFYEIKPLVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EMFSSLAKASTDAEGRFFIDRPSTYFRPILDYLRTGQVPTQHIPEVYREAQFYEIKPLVK
               70        80        90       100       110       120

              100       110       120       130       140       150
pF1KB8 LLEDMPQIFGEQVSRKQFLLQVPGYSENLELMVRLARAEAITARKSSVLVCLVETEEQDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLEDMPQIFGEQVSRKQFLLQVPGYSENLELMVRLARAEAITARKSSVLVCLVETEEQDA
              130       140       150       160       170       180

              160       170       180       190       200       210
pF1KB8 YYSEVLCFLQDKKMFKSVVKFGPWKAVLDNSDLMHCLEMDIKAQGYKVFSKFYLTYPTKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YYSEVLCFLQDKKMFKSVVKFGPWKAVLDNSDLMHCLEMDIKAQGYKVFSKFYLTYPTKR
              190       200       210       220       230       240

              220     
pF1KB8 NEFHFNIYSFTFTWW
       :::::::::::::::
CCDS82 NEFHFNIYSFTFTWW
              250     

>>CCDS55117.1 KCTD7 gene_id:154881|Hs108|chr7             (288 aa)
 initn: 503 init1: 249 opt: 376  Z-score: 454.5  bits: 91.7 E(32554): 5.4e-19
Smith-Waterman score: 481; 39.1% identity (63.4% similar) in 238 aa overlap (4-224:52-288)

                                          10        20        30   
pF1KB8                            MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMF
                                     :: ::.::   :: :.::: .  . :: ::
CCDS55 DAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRCYEDTMLAAMF
              30        40        50        60        70        80 

            40        50        60        70         80        90  
pF1KB8 SSLAKASTDAEGRFFIDRPSTYFRPILDYLRTGQVPT-QHIPEVYREAQFYEIKPLVKLL
       :.     ::.:::.:::: .:.:  .:..::.:..:  ...  ::.:::.: : ::.. :
CCDS55 SGRHYIPTDSEGRYFIDRDGTHFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQL
              90       100       110       120       130       140 

            100       110       120       130         140          
pF1KB8 EDMPQIFGEQVSRKQFLLQVPGYSENLELMVRLARAEAIT--ARKSSVLVCLVETEEQ-D
       :.:  . ::.: :. ::  .: :...:: .:..:: .:.   :: ... ::. . :    
CCDS55 ENMQPLKGEKV-RQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPIT
             150        160       170       180       190       200

     150       160                 170       180       190         
pF1KB8 AYYSEVLCFLQ------DKKMFKSV----VKFGPWKAVLDNSDLMHCLEMDIKAQGYKVF
        :   .:  :.      : ..:.      :.::::.:: :  ::.:::  :..:::  : 
CCDS55 PYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVD
              210       220       230       240       250       260

     200       210          220     
pF1KB8 SKFYLTYPTKR-NEFHFN--IYSFTFTWW
        .   .   .  :... .  :: : .:: 
CCDS55 HQCIGVCDKHLVNHYYCKRPIYEFKITW 
              270       280         

>>CCDS5534.1 KCTD7 gene_id:154881|Hs108|chr7              (289 aa)
 initn: 518 init1: 249 opt: 376  Z-score: 454.5  bits: 91.7 E(32554): 5.4e-19
Smith-Waterman score: 496; 39.3% identity (63.6% similar) in 239 aa overlap (4-225:52-289)

                                          10        20        30   
pF1KB8                            MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMF
                                     :: ::.::   :: :.::: .  . :: ::
CCDS55 DAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRCYEDTMLAAMF
              30        40        50        60        70        80 

            40        50        60        70         80        90  
pF1KB8 SSLAKASTDAEGRFFIDRPSTYFRPILDYLRTGQVPT-QHIPEVYREAQFYEIKPLVKLL
       :.     ::.:::.:::: .:.:  .:..::.:..:  ...  ::.:::.: : ::.. :
CCDS55 SGRHYIPTDSEGRYFIDRDGTHFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQL
              90       100       110       120       130       140 

            100       110       120       130         140          
pF1KB8 EDMPQIFGEQVSRKQFLLQVPGYSENLELMVRLARAEAIT--ARKSSVLVCLVETEEQ-D
       :.:  . ::.: :. ::  .: :...:: .:..:: .:.   :: ... ::. . :    
CCDS55 ENMQPLKGEKV-RQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPIT
             150        160       170       180       190       200

     150       160                 170       180       190         
pF1KB8 AYYSEVLCFLQ------DKKMFKSV----VKFGPWKAVLDNSDLMHCLEMDIKAQGYKVF
        :   .:  :.      : ..:.      :.::::.:: :  ::.:::  :..:::  : 
CCDS55 PYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVD
              210       220       230       240       250       260

     200       210          220     
pF1KB8 SKFYLTYPTKR-NEFHFN--IYSFTFTWW
        .   .   .  :... .  :: : .:::
CCDS55 HQCIGVCDKHLVNHYYCKRPIYEFKITWW
              270       280         

>>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3              (237 aa)
 initn: 244 init1: 191 opt: 264  Z-score: 323.1  bits: 67.1 E(32554): 1.1e-11
Smith-Waterman score: 264; 29.1% identity (59.2% similar) in 206 aa overlap (1-198:10-205)

                        10        20        30        40        50 
pF1KB8          MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDR
                :.  : :::::...::.: :: ..: : :. ::..   .. : .: .::::
CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDR
               10        20        30        40        50        60

              60          70          80        90           100   
pF1KB8 PSTYFRPILDYLRTGQV--PT--QHIPEVYREAQFYEIKPLVKLLED----MPQIFGEQV
        .  :: .:..:::...  :   ...  . .::.::.:.::.. :.:    .:.   :.:
CCDS28 DGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEV
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB8 SRKQFLLQVPGYSENLELMVRLARAEAITARKSSVLVCLVETEEQDAYYSEVLCFLQDKK
        . .   ..  ::. . ...      .::..  :.:      :  . :...    ..: .
CCDS28 VELSSTRKLSKYSNPVAVIITQL---TITTKVHSLL------EGISNYFTKWNKHMMDTR
              130       140          150             160       170 

           170       180       190       200       210       220   
pF1KB8 MFKSVVKFGPWKAVLDNSDLMHCLEMDIKAQGYKVFSKFYLTYPTKRNEFHFNIYSFTFT
         .    :::     . :  .: .:. :  ::. .                         
CCDS28 DCQVSFTFGPCDYHQEVSLRVHLMEY-ITKQGFTIRNTRVHHMSERANENTVEHNWTFCR
             180       190        200       210       220       230

              
pF1KB8 WW     
              
CCDS28 LARKTDD
              

>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11           (260 aa)
 initn: 255 init1: 200 opt: 254  Z-score: 310.6  bits: 64.9 E(32554): 5.6e-11
Smith-Waterman score: 254; 42.9% identity (73.5% similar) in 98 aa overlap (1-94:1-98)

               10        20        30        40        50        60
pF1KB8 MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDRPSTYFRPIL
       ::  . :::::...::.:.:: .:: : :. :::.   .. :..:  :::: .  :: ::
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYIL
               10        20        30        40        50        60

                 70          80        90       100       110      
pF1KB8 DYLRTGQV--PT--QHIPEVYREAQFYEIKPLVKLLEDMPQIFGEQVSRKQFLLQVPGYS
       ..:::...  :   :..  . :::.::...::.. :..                      
CCDS31 NFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRV
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB8 ENLELMVRLARAEAITARKSSVLVCLVETEEQDAYYSEVLCFLQDKKMFKSVVKFGPWKA
                                                                   
CCDS31 QTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQD
              130       140       150       160       170       180




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:24:27 2016 done: Fri Nov  4 15:24:28 2016
 Total Scan time:  2.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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