GENSCAN 1.0	Date run:  4-Nov-116	Time: 15:23:12

Sequence gi568815582r:11154846_11355478 : 200633 bp : 51.19% C+G : Isochore 3 (51 - 57 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 Intr -    661    538  124  1  1   88   65    79 0.231   6.26
 1.02 Intr -    880    797   84  1  0   76   73    70 0.943   4.81
 1.01 Init -   2872   2864    9  1  0   99   94     2 0.927   2.36
 1.00 Prom -   4448   4409   40                              -1.11

 2.00 Prom +   6787   6826   40                              -3.21
 2.01 Init +   7416   7467   52  2  1   97   97     2 0.476   1.32
 2.02 Intr +  11543  11707  165  0  0   93   72   129 0.719  12.25
 2.03 Term +  23490  23845  356  1  2   68   47   350 0.001  23.91
 2.04 PlyA +  24393  24398    6                              -3.64

 3.03 PlyA -  24480  24475    6                               1.05
 3.02 Term -  25618  25545   74  2  2  142   49    21 0.570   1.96
 3.01 Init -  26811  26631  181  0  1   80   40   163 0.523   8.03
 3.00 Prom -  33235  33196   40                              -2.51

 4.03 PlyA -  34921  34916    6                              -0.45
 4.02 Term -  38978  38637  342  2  0   15   54   436 0.977  27.77
 4.01 Init -  39616  39548   69  1  0   51   90    48 0.484   2.30
 4.00 Prom -  42202  42163   40                              -2.51

 5.00 Prom +  45562  45601   40                              -3.91
 5.01 Init +  49591  49599    9  0  0   68   80    20 0.530  -1.51
 5.02 Intr +  49686  49786  101  2  2   27   91   127 0.757   6.31
 5.03 Intr +  50383  50507  125  1  2   45   71    59 0.741   0.63
 5.04 Intr +  51125  51168   44  0  2  108   80    94 0.558   9.05
 5.05 Intr +  51810  51925  116  2  2   84   76    14 0.341  -0.45
 5.06 Intr +  53090  53170   81  2  0   60   46    94 0.153   1.65
 5.07 Intr +  56832  56958  127  0  1   84   78   121 0.628  11.89
 5.08 Intr +  69256  69319   64  0  1  120   80    22 0.206   3.38
 5.09 Intr +  73478  73589  112  0  1   59   71    53 0.509   0.64
 5.10 Intr +  75003  75093   91  0  1   67   32    83 0.367   1.10
 5.11 Intr +  75192  75356  165  2  0   77   94    86 0.779   8.77
 5.12 Intr +  83553  83578   26  2  2  107   81    13 0.035  -0.19
 5.13 Term +  88156  88633  478  1  1   65   43   349 0.238  22.80
 5.14 PlyA +  93051  93056    6                               1.05

 6.05 PlyA -  95927  95922    6                               1.05
 6.04 Term - 100683  99998  686  1  2  137   47  1171 0.882 112.13
 6.03 Intr - 101392 101234  159  2  0   -4   99   107 0.031   3.07
 6.02 Intr - 114375 114018  358  0  1   45   80   248 0.338  15.09
 6.01 Init - 115199 115116   84  2  0   98   80     6 0.758   1.78
 6.00 Prom - 115884 115845   40                              -6.40

 7.02 PlyA - 116018 116013    6                               1.05
 7.01 Sngl - 118750 118439  312  1  0   74   46   536 0.994  44.25
 7.00 Prom - 119567 119528   40                              -5.01

 8.02 PlyA - 120812 120807    6                               1.05
 8.01 Sngl - 121525 121217  309  1  0   88   47   166 0.698   8.73
 8.00 Prom - 121669 121630   40                              -4.21

 9.05 PlyA - 121876 121871    6                               1.05
 9.04 Term - 122838 122698  141  0  0  108   37    58 0.434   0.94
 9.03 Intr - 126190 126175   16  0  1  105   92    15 0.526  -0.37
 9.02 Intr - 126456 126282  175  1  1   92   80   147 0.320  13.81
 9.01 Init - 132338 132239  100  2  1   90   14    96 0.398   2.78
 9.00 Prom - 134073 134034   40                              -2.71

10.00 Prom + 144430 144469   40                              -2.01
10.01 Init + 151017 151038   22  2  1   74   78    35 0.102   0.89
10.02 Intr + 155143 155261  119  2  2  128   49    14 0.302   2.19
10.03 Intr + 158041 158092   52  0  1  101  110     2 0.274   2.67
10.04 Intr + 161607 161624   18  1  0  117   93    12 0.344   1.66
10.05 Intr + 162120 162289  170  1  2   90   51    88 0.724   5.48
10.06 Term + 166489 166554   66  0  0   77   42    60 0.188  -1.47
10.07 PlyA + 166772 166777    6                              -0.45

11.06 PlyA - 167659 167654    6                              -0.45
11.05 Term - 168472 168411   62  2  2  121   32    20 0.291  -2.04
11.04 Intr - 173751 173626  126  1  0   65  111    48 0.775   5.96
11.03 Intr - 177024 176889  136  0  1   86   98    21 0.096   3.55
11.02 Intr - 186048 185939  110  1  2   65  100    42 0.048   3.60
11.01 Init - 187535 187529    7  2  1   72   75     7 0.335  -1.59
11.00 Prom - 188173 188134   40                              -3.51

12.00 Prom + 188306 188345   40                              -1.51
12.01 Init + 190627 190921  295  0  1   91   95   401 0.953  36.45
12.02 Intr + 195797 195915  119  0  2   88   60    65 0.259   4.39
12.03 Term + 199151 199198   48  1  0  112   43    64 0.465   1.89
12.04 PlyA + 199438 199443    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  23498  23845  348  1  0   75   47   350 0.985  25.97
S.002 Init +  93461  93519   59  1  2   90   94    66 0.815   8.13
S.003 Intr - 101405 101234  172  2  1   32   99   103 0.808   5.83


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_1|73_aa
MGQIGARPDRWLMTFYDTSSTTRTEDTIWNYTCGTWLTGRLDTSLLLSAGEKPEEQQLGF
RLVTFTLATGYGX

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_1|219_bp
atgggccagattggggctaggccagaccgatggctgatgacgttctatgacacatcatct
acaacaagaactgaagatactatctggaactatacctgtgggacatggctaaccggacgg
ctggacacgagccttctgctatctgcaggggagaaacctgaagagcagcaacttggcttt
aggcttgtcacttttactctggctacaggatacggtgnn

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_2|190_aa
MGIVSPHCWSGLPGPALGFAVAQCINQHSSPSLSSQSPPSASGSPSGSGSTSHCDSGGTS
SSSTPSTAQSPADAPMSPELPKPHLPDQLVIVNETEADSKPSKNVARSAAVETASLSPSL
VPARQPTISLLCEDTADTLSVESLTLVPPVDPHSLRSLTGMPPLSTPAAACTEPVGEEAA
CAEPVGTAED

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_2|573_bp
atgggcatagtttccccccactgttggagtggcctgcctggccctgctcttggcttcgcc
gtggcccagtgcataaaccagcacagctccccgtccctgtcctcacagtcgccaccctcc
gccagcgggagccccagcggcagcgggagcaccagccactgcgactctggaggcaccagc
tcgtcctccaccccctccacagcccagagtccagcagatgcccccatgagtccagaactg
cctaagcctcaccttcctgaccagttggtaatcgtcaacgaaacggaagcagactctaag
cccagcaagaacgtggccaggagcgcagccgtggagacagccagcctgtcccccagcctc
gtccctgcccggcagcccaccatttccctgctctgcgaggacacggctgacacgctgagc
gtcgaatcgctgacccttgtccccccagttgacccccacagcctccgcagcctcaccggc
atgcccccgctgtccacgccggctgccgcctgcacagagcccgtgggcgaagaggctgca
tgtgctgagcctgtgggcaccgctgaggactga

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_3|84_aa
MVKAGPSCLGERLSWPHLTCWDRYLARPERDEHTSTTIFKAKVWEFLRPALLPDLANPAG
GILQMATVVVVCPSFGFLPMWPPF

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_3|255_bp
atggtgaaggctggcccttcctgcctgggggagcgcctcagctggccccatctgacctgc
tgggacaggtaccttgcacgtccagaaagggacgagcacacctccacaacaatattcaaa
gccaaggtttgggagttcctgcggccagccctgctccctgacttggcaaacccagccgga
gggattctgcagatggccacggtggtcgtggtttgtccttcctttgggtttctgcccatg
tggccccctttctga

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_4|136_aa
MHEFTRPKKSPAKALKHKIANVKSEIPSPKRRGGRRRKKEGGGGEEEEEEEEEEEEEEQD
EEEEGGKEGKDEEEEEEELEEEEKMIIMIMTDDEEKEEEEEDEEEGEERKRRKKKSYDAD
GPGTMAYTCNPSTLRD

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_4|411_bp
atgcatgagttcaccaggcccaagaaatcgcctgcaaaggctctgaaacacaaaatagca
aatgtcaagagtgagatcccatctccaaaaagaagaggaggaagaagaaggaagaaggaa
ggaggaggaggagaagaggaggaagaggaggaagaggaggaagaagaagaagagcaggat
gaggaggaagagggaggcaaagaaggaaaagatgaggaggaggaagaggaggagttagag
gaggaggaaaagatgatcatcatgataatgactgatgatgaagagaaagaagaagaggaa
gaggatgaagaggaaggggaagagaggaagaggagaaagaagaaaagttatgatgcagat
gggccaggcaccatggcttacacctgtaatcccagcactttgagagactga

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_5|512_aa
MLMKNDQKTVTNYNVGNDDAEEEEQGPMEKDRVHTTSPNGWTSLFIPILQMQKLSFREAE
ELTLGHTASKWHSQDPNPGDAAELLGAFMSDIQTCRSSSGKLLLAPRSQLSLPGQVPLLL
PTVLSHPWLLPRTLSGGSLGHMEFLAAVKKEDFTRLALCPARTICWSRAEAASFERDLYP
PLPYRCTTPIHHHTYDVIFSEVGKLRPREVSGMSEAAQRRVRDSLSRFTSGFLLLDPEDI
LNDASGYFGLCEPCLPDCARINASVIPIFQLRRKSSRSELAPIGTAEGAVVRPDPGPDAR
GPFLLASLQSLMCCLMATSYWESPGGLEQDQGTVKWTKAFLRRKQTPVTQDSGFSSFDLD
YDFQRDYDRMYSYPARVPPPPPIARAVVPLKHQRVSGNTSQRGKSGFNSKSGQRGSSKSG
KLKGDDLQAIKQELTQIKQKVDSLLEDPEKMEKKQSKQAVEMKNGKSEEKQSSSSRETHV
KIESEGGADDSAEERDLLDDEDNEDWGMTSWS

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_5|1539_bp
atgctcatgaaaaatgaccagaaaacagttacaaattacaatgttggcaacgatgatgct
gaggaggaagagcaggggcccatggagaaggacagggtccataccaccagccctaacgga
tggacatcgctattcattcccattctacagatgcagaaactgagcttcagggaagctgag
gagctcaccctgggtcatacggccagcaagtggcacagtcaagatccgaacccaggggat
gctgctgagctgcttggagccttcatgtcggacatccagacatgccgcagcagcagtggc
aaacttctgcttgcccccagaagccagctgagtcttccaggtcaagtccctctcctgctc
cccacagtcctgtcacacccctggctgctccccaggactctttctggggggagcctgggc
cacatggagttcctggcagctgtgaagaaggaggacttcaccaggctggctctgtgccct
gcaagaaccatctgctggagccgagcagaggctgcctcctttgaacgggacctgtaccct
ccactcccctaccgctgcaccacaccaatccatcatcacacttatgatgtcatcttctca
gaggtggggaagctgaggcccagagaggtgagtggcatgtccgaagcagcccagcgcagg
gtgcgagattctttaagccggtttacatcaggattccttttacttgaccccgaagacatc
cttaatgatgcctctggttattttggtctttgtgagccgtgtctgcctgactgtgccagg
ataaatgccagtgttattcccatttttcagctgcgacgcaagagctcaagaagtgaactg
gctcccattggcacggcagaaggagccgtggtaaggcctgatcctgggccagatgccaga
gggcccttcctgttggcatctctgcaaagcctcatgtgttgtctgatggcaacatcgtac
tgggagagccctggaggcctggagcaggaccaagggacagtcaagtggacaaaggccttt
ctgaggaggaagcagactccagttacccaggactctgggttctcctcttttgacttggac
tatgactttcaacgggattatgataggatgtacagttacccagcacgtgtacctcctcct
cctcctattgctcgggctgtagtgcccttgaaacatcagcgtgtatcaggaaacacctca
caaaggggcaaaagtggcttcaattctaagagtggacagcggggatcttccaagtctgga
aagttgaaaggagatgaccttcaggccattaagcaggagttgacccagataaaacaaaaa
gtggattctctcctggaagacccggaaaaaatggaaaagaaacagagcaaacaagcagta
gagatgaagaatggtaagtcagaagagaagcagagcagcagctcacgtgagactcatgtg
aagatagagtctgaaggtggtgcagatgactctgctgaggagagggacctactggatgat
gaggataatgaagattgggggatgaccagctggagttga

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_6|428_aa
MAYPRLDISANWDLNPALNFPTLDLAGELHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRS
QSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSPMRPTILHCRCPKNR
KNLEGKLKKKKMAKRIQQVYKTKTRSSAGLKDWRRGGRRTERAAAVAAARLLAPEHAREP
PRSAPEPPAVPPAASRAPPPAHPRTLWPTPPAGPFCRMVAHNQVAADNAVSTAAEPRRRP
EPSSSSSSSPAAPARPRPCPAVPAPAPGDTHFRTFRSHADYRRITRASALLDACGFYWGP
LSVHGAHERLRAEPVGTFLVRDSRQRNCFFALSVKMASGPTSIRVHFQAGRFHLDGSRES
FDCLFELLEHYVAAPRRMLGAPLRQRRVRPLQELCRQRIVATVGRENLARIPLNPVLRDY
LSSFPFQI

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_6|1287_bp
atggcctacccaagactggacatcagtgcaaactgggatttgaacccggctctgaatttc
ccgactttagatctggctggggagctccatagcaactctcagccccaaagccgcacctgc
acccgccattgccaaaccttcagccagagttgcagacagagccatcgtggcagccggagc
cagagctccagccagagcccggccagccaccgcaacccaactggagcccacagctcatcc
ggccaccagagccagagtcccaacactagtccaccaccaaagcgccacaaaaagactatg
aactcccaccactctcccatgcggcccaccatcctgcactgccgctgccccaagaacaga
aagaacttggaaggcaagctgaaaaagaaaaaaatggccaagaggatccagcaggtgtac
aaaaccaagacgcggagctcagccggtttaaaagactggcgcaggggcgggcgccgaaca
gagcgagctgcggccgtggcagctgcacggctcctggccccggagcatgcgcgagagccg
ccccggagcgccccggagccccccgccgtcccgcccgcggcgtcccgcgccccgccgcca
gcgcacccccggacgctatggcccacccctccggctggccccttctgtaggatggtagca
cacaaccaggtggcagccgacaatgcagtctccacagcagcagagccccgacggcggcca
gaaccttcctcctcttcctcctcctcgcccgcggcccccgcgcgcccgcggccgtgcccc
gcggtcccggccccggcccccggcgacacgcacttccgcacattccgttcgcacgccgat
taccggcgcatcacgcgcgccagcgcgctcctggacgcctgcggattctactgggggccc
ctgagcgtgcacggggcgcacgagcggctgcgcgccgagcccgtgggcaccttcctggtg
cgcgacagccgccagcggaactgctttttcgcccttagcgtgaagatggcctcgggaccc
acgagcatccgcgtgcactttcaggccggccgctttcacctggatggcagccgcgagagc
ttcgactgcctcttcgagctgctggagcactacgtggcggcgccgcgccgcatgctgggg
gccccgctgcgccagcgccgcgtgcggccgctgcaggagctgtgccgccagcgcatcgtg
gccaccgtgggccgcgagaacctggctcgcatccccctcaaccccgtcctccgcgactac
ctgagctccttccccttccagatttga

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_7|103_aa
MGSRCAKLNTGQSPGHSPGHSTGHGRGHESSMKKLMACVSQDNFSLSSAGEEEEEEEEEG
EEEEKEELPVQGKLLLLEPERQEEGHKDNAEAQQSPEPKRTPS

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_7|312_bp
atgggttcccgctgtgccaagctcaacacaggccagagcccaggccacagcccaggccac
agcacgggccatggccggggccacgaatcctccatgaaaaagctcatggcctgtgtgagt
caggataacttctccttgtcatcagcgggcgaggaagaggaggaagaggaggaggagggg
gaagaggaggagaaagaagagctgccggtgcagggcaagctgctgctgctggagcctgag
cggcaggaggagggccacaaggacaacgccgaggcccagcagagccccgagcccaagcgg
acaccctcctga

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_8|102_aa
MVRYRVRSLSERSHEVYRQQLHGQEQGHHGQEEQGLSPEHVEVYERTHGQSHYRRRHCSR
RRLHRIHRRQHRSCRRRKRRSCRHRRRHRRGLPAPPPCPACP

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_8|309_bp
atggtccgataccgcgtgaggagcctgagcgaacgctcgcacgaggtgtacaggcagcag
ttgcatgggcaagagcaaggacaccacggccaagaggagcaagggctgagcccggagcac
gtcgaggtctacgagaggacccatggccagtctcactataggcgcagacactgctctcga
aggaggctgcaccggatccacaggcggcagcatcgctcctgcagaaggcgcaaaagacgc
tcctgcaggcaccggaggaggcatcgcagaggtctgcctgcgcccccgccttgccctgca
tgtccctga

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_9|143_aa
MIKDRNVTAQRSLKGDGILEQENIEEKLKQSEESWLAQPRWCPALSIQAKPILHHGQVQM
LSQPEPEQILPPETKKSQTKEAELPDTEESHEVLPPQDPRDCTGPTQIIWDDLCIFKSLN
LCICHIPTFSLPSMKGKLVLQFL

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_9|432_bp
atgatcaaagacaggaatgtcacagcccagaggagcctaaagggagacgggatcctggaa
caggaaaacattgaggaaaaactaaagcaatctgaggaaagttggctggctcagccaagg
tggtgccctgctctgagcattcaggccaagcccatcctgcaccatggccaggtacagatg
ctgtcgcagccagagccggagcagatattaccgccagagacaaagaagtcgcagacgaag
gaggcggagctgccagacacggaggagagccatgaggtgctgccgccccaggaccctcgt
gactgcactgggccaacccagatcatctgggatgatctctgcatcttcaagtccttaaat
ttgtgtatctgccacattcccacattctccctgccctccatgaaagggaaactggttttg
cagtttctgtga

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_10|148_aa
MSERGKHAPWGSDCITRVCFCDQTSYKQNHVVYASLCLASSSEHDVQDLGTGGARHLMPC
PRLAGPSISAETKLWQLERDGVGRVGYSKIGKQHRPQMPAEGERTSKCDEAPVCFAAITV
SKSHNHTASGPQTSVGTSATCSTHLELQ

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_10|447_bp
atgagtgaacgtggaaaacacgctccctggggatcagactgtatcaccagagtctgtttc
tgtgaccaaacgtcctataaacagaatcacgtggtgtatgcttctctgtgcctggcttcc
tcctctgaacatgatgtccaggatctgggcactggaggcgccagacatcttatgccctgt
ccaaggctagcagggccatccatcagtgctgaaacgaaactttggcaactggagagggat
ggagtggggcgggtggggtacagcaagatcgggaaacagcaccgtcctcaaatgcctgca
gaaggtgagagaaccagcaagtgtgatgaagcacctgtgtgcttcgcagccattaccgtg
tctaaatctcacaaccacacagccagtggtcctcaaacatcagtaggcaccagtgccacc
tgcagcacccacctggagctccagtag

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_11|146_aa
MASLKQPPVPASPSSSFPVRSKILGRRFPATCTSEDKGKRGPLSTARLDNEFPRSPTSGP
KKGVQGNPHTPPLSTALANGPHAAGICEQRGLAAKGLEDGPSAKVSAPKAEGLGELEEAG
FQEGWPGTPHMGFGVHPCSRFQILRS

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_11|441_bp
atggctagcctgaagcaaccccctgtgccagcctccccgagctccagcttcccagtgaga
tcaaagatccttggaaggcggtttcctgccacctgcaccagtgaggacaaaggtaagaga
ggacctctgtctacagccagacttgataatgaattccccaggagtccaacctctggccct
aaaaagggggttcaaggaaatcctcataccccacctctttcaacagcactggccaatggc
ccccatgctgcagggatctgtgagcagagaggcctggctgcaaagggtctggaggacggc
ccttctgctaaggtgtccgctcccaaggcagagggcttgggggagctggaggaggctggg
ttccaggaggggtggccagggacacctcacatgggatttggggtccacccatgttctcgt
ttccagatcctcagatcctaa

>gi568815582r:11154846_11355478|GENSCAN_predicted_peptide_12|153_aa
MAAAADSFSGGPAGVRLPRSPPLKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWM
QGRVVMADRGEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAV
KMTDLSDNPIHESMWELEGPIRDTTFHFVIMSP

>gi568815582r:11154846_11355478|GENSCAN_predicted_CDS_12|462_bp
atggcggcggctgcggactcgttctcaggcggccccgcgggggtgcggcttccgaggtcg
ccgccactcaaggtgctggcggagcagctgcggcgcgacgcggagggcggcccgggcgcg
tggcggctgtcacgggcggcggcgggccgcgggccgctggacctggcggccgtgtggatg
cagggcagggtagtgatggcggaccgcggcgaggctcggctgagggacccgagcggggac
ttctcggtccgcggcctggagcgggtgccgcgcgggcggccctgtctagtcccaggaaag
tatgtgatggtgatgggagtggttcaggcctgcagccctgagccctgcctgcaggctgtg
aagatgacagacctttctgataatcccatccatgaaagtatgtgggaactggagggtccc
atccgggacaccacattccatttcgtcatcatgtctccctag