Result of FASTA (omim) for pF1KB8758
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8758, 201 aa
  1>>>pF1KB8758 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9414+/-0.000412; mu= 15.2388+/- 0.026
 mean_var=85.2912+/-17.059, 0's: 0 Z-trim(113.8): 431  B-trim: 581 in 1/51
 Lambda= 0.138874
 statistics sampled from 22845 (23361) to 22845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.274), width:  16
 Scan time:  5.120

The best scores are:                                      opt bits E(85289)
NP_001182257 (OMIM: 300284) ras-related protein Ra ( 201) 1353 280.8   1e-75
XP_016885453 (OMIM: 300284) PREDICTED: ras-related ( 201) 1353 280.8   1e-75
NP_004242 (OMIM: 300284) ras-related protein Rab-9 ( 201) 1353 280.8   1e-75
NP_057454 (OMIM: 300285) ras-related protein Rab-9 ( 201) 1072 224.5 9.2e-59
NP_004628 (OMIM: 600882,602298) ras-related protei ( 207)  688 147.6 1.4e-35
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216)  472 104.3 1.5e-22
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218)  436 97.1 2.2e-20
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203)  433 96.5 3.2e-20
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203)  432 96.3 3.7e-20
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203)  432 96.3 3.7e-20
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203)  432 96.3 3.7e-20
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203)  432 96.3 3.7e-20
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207)  431 96.1 4.3e-20
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215)  430 95.9   5e-20
XP_005245626 (OMIM: 603949) PREDICTED: ras-related ( 203)  429 95.7 5.6e-20
NP_003920 (OMIM: 603949) ras-related protein Rab-7 ( 203)  429 95.7 5.6e-20
NP_001129134 (OMIM: 603949) ras-related protein Ra ( 203)  429 95.7 5.6e-20
XP_005245628 (OMIM: 603949) PREDICTED: ras-related ( 203)  429 95.7 5.6e-20
XP_005245627 (OMIM: 603949) PREDICTED: ras-related ( 203)  429 95.7 5.6e-20
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201)  425 94.8 9.7e-20
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207)  424 94.7 1.1e-19
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201)  420 93.8 1.9e-19
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205)  420 93.9   2e-19
NP_057406 (OMIM: 612673) ras-related protein Rab-1 ( 215)  420 93.9   2e-19
NP_065120 (OMIM: 612942) ras-related protein Rab-2 ( 213)  416 93.1 3.5e-19
NP_783865 (OMIM: 609956) ras-related protein Rab-3 ( 216)  412 92.3 6.2e-19
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206)  408 91.5   1e-18
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256)  408 91.6 1.2e-18
NP_741995 (OMIM: 300774) ras-related protein Rab-3 ( 213)  407 91.3 1.2e-18
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200)  404 90.6 1.8e-18
NP_055814 (OMIM: 612398) ras-related protein Rab-2 ( 225)  404 90.7 1.9e-18
NP_001317400 (OMIM: 609956) ras-related protein Ra ( 196)  403 90.4   2e-18
NP_001006639 (OMIM: 609956) ras-related protein Ra ( 223)  403 90.5 2.2e-18
NP_001157461 (OMIM: 609956) ras-related protein Ra ( 228)  403 90.5 2.2e-18
NP_065724 (OMIM: 612966) ras-related protein Rab-2 ( 194)  401 90.0 2.6e-18
NP_004569 (OMIM: 179511) ras-related protein Rab-4 ( 218)  396 89.1 5.7e-18
XP_005269109 (OMIM: 179514) PREDICTED: ras-related ( 215)  390 87.9 1.3e-17
NP_002859 (OMIM: 179514) ras-related protein Rab-5 ( 215)  390 87.9 1.3e-17
XP_005269108 (OMIM: 179514) PREDICTED: ras-related ( 215)  390 87.9 1.3e-17
NP_001238965 (OMIM: 179514) ras-related protein Ra ( 215)  390 87.9 1.3e-17
NP_001294982 (OMIM: 605455) ras-related protein Ra ( 190)  389 87.6 1.4e-17
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216)  386 87.1 2.3e-17
NP_001193765 (OMIM: 605570) ras-related protein Ra ( 155)  381 85.9 3.6e-17
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212)  382 86.3 3.9e-17
XP_005251788 (OMIM: 611344) PREDICTED: ras and EF- ( 611)  387 87.7 4.1e-17
XP_005251787 (OMIM: 611344) PREDICTED: ras and EF- ( 717)  387 87.8 4.5e-17
NP_958842 (OMIM: 604037) ras-related protein Rab-5 ( 216)  381 86.1 4.6e-17
XP_011523393 (OMIM: 604037) PREDICTED: ras-related ( 216)  381 86.1 4.6e-17
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216)  381 86.1 4.6e-17
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216)  381 86.1 4.6e-17


>>NP_001182257 (OMIM: 300284) ras-related protein Rab-9A  (201 aa)
 initn: 1353 init1: 1353 opt: 1353  Z-score: 1480.2  bits: 280.8 E(85289): 1e-75
Smith-Waterman score: 1353; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB8 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD
              130       140       150       160       170       180

              190       200 
pF1KB8 HLIQTDTVNLHRKPKPSSSCC
       :::::::::::::::::::::
NP_001 HLIQTDTVNLHRKPKPSSSCC
              190       200 

>>XP_016885453 (OMIM: 300284) PREDICTED: ras-related pro  (201 aa)
 initn: 1353 init1: 1353 opt: 1353  Z-score: 1480.2  bits: 280.8 E(85289): 1e-75
Smith-Waterman score: 1353; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB8 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD
              130       140       150       160       170       180

              190       200 
pF1KB8 HLIQTDTVNLHRKPKPSSSCC
       :::::::::::::::::::::
XP_016 HLIQTDTVNLHRKPKPSSSCC
              190       200 

>>NP_004242 (OMIM: 300284) ras-related protein Rab-9A [H  (201 aa)
 initn: 1353 init1: 1353 opt: 1353  Z-score: 1480.2  bits: 280.8 E(85289): 1e-75
Smith-Waterman score: 1353; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB8 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD
              130       140       150       160       170       180

              190       200 
pF1KB8 HLIQTDTVNLHRKPKPSSSCC
       :::::::::::::::::::::
NP_004 HLIQTDTVNLHRKPKPSSSCC
              190       200 

>>NP_057454 (OMIM: 300285) ras-related protein Rab-9B [H  (201 aa)
 initn: 1072 init1: 1072 opt: 1072  Z-score: 1176.0  bits: 224.5 E(85289): 9.2e-59
Smith-Waterman score: 1072; 76.1% identity (91.5% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB8 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI
       :.::: :.:::::::::::::::::::::::::.: ::::::::::.::::::.:::.::
NP_057 MSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV
       :::::::::.:::::::::.::::::::::: :::.::.::.::::::::::.:: ::::
NP_057 WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD
       .::::.:  .:::.:::::.:: .::::::.:::::: :::..:::::::.:::.:.. .
NP_057 VLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE
              130       140       150       160       170       180

              190       200 
pF1KB8 HLIQTDTVNLHRKPKPSSSCC
       : .   :..:.   : .::::
NP_057 HCMLGHTIDLNSGSKAGSSCC
              190       200 

>>NP_004628 (OMIM: 600882,602298) ras-related protein Ra  (207 aa)
 initn: 675 init1: 675 opt: 688  Z-score: 760.0  bits: 147.6 E(85289): 1.4e-35
Smith-Waterman score: 688; 50.7% identity (79.6% similar) in 201 aa overlap (4-201:5-205)

                10        20        30        40        50         
pF1KB8  MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ
           :. :.:::.:::.::::.::::.::..::..:   :::..::.:.. :: ..::::
NP_004 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF
       ::::::::::.:: . ::::.:::.:.:.:   ..:..:..:. ::.  :. ..::.:::
NP_004 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 VILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRS
       :.::::::. .:::.:..::::: .... ::::::::.: ::  ::.  .: .:  : . 
NP_004 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
              130       140       150       160       170       180

     180        190         200   
pF1KB8 DHLIQ-TDTVNLHR--KPKPSSSCC  
       .   .  . ..: .  . : :.  :  
NP_004 ELYNEFPEPIKLDKNDRAKASAESCSC
              190       200       

>>NP_004654 (OMIM: 605570) ras-related protein Rab-11A i  (216 aa)
 initn: 469 init1: 343 opt: 472  Z-score: 525.9  bits: 104.3 E(85289): 1.5e-22
Smith-Waterman score: 472; 38.9% identity (69.2% similar) in 208 aa overlap (7-201:11-213)

                   10        20        30        40        50      
pF1KB8     MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV
                 ::::.:.::.:::::.:..:.. :.:. .   :::::: .....:::. .
NP_004 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB8 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES
         ::::::::::.:.. . .:::.   ::....    ...:.  : ::.  .::     .
NP_004 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SN
               70        80        90       100       110          

        120       130        140       150       160          170  
pF1KB8 FPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA---VRRV
       . ....::: :. . : : :.::.:. . ::   ..:::: :.::: :::.     . :.
NP_004 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEIYRI
        120       130       140        150       160       170     

                 180       190           200    
pF1KB8 LATE---DR--SDHLIQTDTVNLHRKP----KPSSSCC   
       .. .   ::  .:   ....: .:  :    ::. .::   
NP_004 VSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI
         180       190       200       210      

>>NP_004209 (OMIM: 604198) ras-related protein Rab-11B [  (218 aa)
 initn: 406 init1: 343 opt: 436  Z-score: 486.9  bits: 97.1 E(85289): 2.2e-20
Smith-Waterman score: 441; 37.1% identity (69.0% similar) in 210 aa overlap (7-201:11-215)

                   10        20        30        40        50      
pF1KB8     MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV
                 ::::.:.::.:::::.:..:.. :.:. .   :::::: .....:::. .
NP_004 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB8 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES
         ::::::::::.:.. . .:::.   ::....    ...:.  : ::.  .::     .
NP_004 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SN
               70        80        90       100       110          

        120       130        140       150       160          170  
pF1KB8 FPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA---VRRV
       . ....::: :. . : : :.::.:. . : .  ..:::: :.:::  ::..    . :.
NP_004 IVIMLVGNKSDLRHLRAVPTDEARAFAEKN-NLSFIETSALDSTNVEEAFKNILTEIYRI
        120       130       140        150       160       170     

               180         190             200    
pF1KB8 LATE---DRSDHLIQ--TDTVNLHRKP-----KPSS-SCC   
       .. .   ::. :  .  ...:..   :     ::.. .::   
NP_004 VSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL
         180       190       200       210        

>>NP_002861 (OMIM: 602672) ras-related protein Rab-13 is  (203 aa)
 initn: 399 init1: 325 opt: 433  Z-score: 484.0  bits: 96.5 E(85289): 3.2e-20
Smith-Waterman score: 433; 35.5% identity (68.0% similar) in 200 aa overlap (7-201:8-200)

                10        20        30        40        50         
pF1KB8  MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ
              :::..:.::.::::. :. :.. ..:..  . :::..:  . ....:. . .:
NP_002 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES--F
       .:::::::::... : .:::.   .:.... : .::.:..:: :      ..::  :   
NP_002 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMK------SIKENASAGV
               70        80        90       100             110    

       120        130       140       150       160       170      
pF1KB8 PFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE
         ..:::: :. ..:.:. :.:.   :..:   .::::::.. ::  ::   .: .:   
NP_002 ERLLLGNKCDMEAKRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDILLKS
          120       130       140        150       160       170   

          180       190       200    
pF1KB8 D--RSDHLIQTDTVNLHRKPKPSSSCC   
          :: .  .  ...:.   : ... :   
NP_002 GGRRSGNGNKPPSTDLKTCDKKNTNKCSLG
           180       190       200   

>>NP_001272989 (OMIM: 605693) ras-related protein Rab-30  (203 aa)
 initn: 403 init1: 317 opt: 432  Z-score: 482.9  bits: 96.3 E(85289): 3.7e-20
Smith-Waterman score: 432; 38.9% identity (67.7% similar) in 198 aa overlap (7-201:9-200)

                 10        20        30        40        50        
pF1KB8   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM
               :::..:.:..::::. :. :.. . :      ::::.:. : .:..:. : .
NP_001 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB8 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP
       :::::::::::::.   .::...  .::...   .::. : .: .:.  ::. :      
NP_001 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK----VI
               70        80        90       100       110          

      120       130        140       150       160       170       
pF1KB8 FVILGNKIDISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATED
        :..:::::..:: .:: ..:. .  .  :. :.:::::.. ::   : . . : : .: 
NP_001 TVLVGNKIDLAERREVSQQRAEEFS-EAQDMYYLETSAKESDNVEKLFLDLACR-LISEA
        120       130       140        150       160        170    

       180       190         200    
pF1KB8 RSDHLIQTDTVNLHRKPKPSS--SCC   
       :.. :... .  :  . :  :  .::   
NP_001 RQNTLVNNVSSPLPGEGKSISYLTCCNFN
          180       190       200   

>>NP_055303 (OMIM: 605693) ras-related protein Rab-30 [H  (203 aa)
 initn: 403 init1: 317 opt: 432  Z-score: 482.9  bits: 96.3 E(85289): 3.7e-20
Smith-Waterman score: 432; 38.9% identity (67.7% similar) in 198 aa overlap (7-201:9-200)

                 10        20        30        40        50        
pF1KB8   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM
               :::..:.:..::::. :. :.. . :      ::::.:. : .:..:. : .
NP_055 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB8 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP
       :::::::::::::.   .::...  .::...   .::. : .: .:.  ::. :      
NP_055 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK----VI
               70        80        90       100       110          

      120       130        140       150       160       170       
pF1KB8 FVILGNKIDISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATED
        :..:::::..:: .:: ..:. .  .  :. :.:::::.. ::   : . . : : .: 
NP_055 TVLVGNKIDLAERREVSQQRAEEFS-EAQDMYYLETSAKESDNVEKLFLDLACR-LISEA
        120       130       140        150       160        170    

       180       190         200    
pF1KB8 RSDHLIQTDTVNLHRKPKPSS--SCC   
       :.. :... .  :  . :  :  .::   
NP_055 RQNTLVNNVSSPLPGEGKSISYLTCCNFN
          180       190       200   




201 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:20:04 2016 done: Fri Nov  4 15:20:05 2016
 Total Scan time:  5.120 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com