GENSCAN 1.0	Date run:  4-Nov-116	Time: 15:19:53

Sequence gi568815581f:43299733_43500335 : 200603 bp : 46.84% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -    410    405    6                              -1.95
 1.03 Term -    923    670  254  0  2   89   44   156 0.040   7.10
 1.02 Intr -  16202  16126   77  1  2   17  101   115 0.275   4.86
 1.01 Init -  17965  17916   50  1  2   51  106    48 0.445   3.32
 1.00 Prom -  18546  18507   40                              -4.26

 2.04 PlyA -  23574  23569    6                               1.05
 2.03 Term -  23791  23579  213  1  0   69   42   138 0.518   4.53
 2.02 Intr -  31207  31014  194  2  2   49   97   103 0.358   6.51
 2.01 Init -  33367  33025  343  1  1   83   55   192 0.356  12.80
 2.00 Prom -  37540  37501   40                              -1.66

 3.00 Prom +  37599  37638   40                              -2.46
 3.01 Init +  38011  38231  221  0  2   40   76   137 0.633   5.80
 3.02 Term +  38331  38448  118  0  1   33   46    85 0.276  -3.19
 3.03 PlyA +  39517  39522    6                               1.05

 4.10 PlyA -  39617  39612    6                               1.05
 4.09 Term -  39772  39717   56  2  2   49   45   125 0.054   2.02
 4.08 Intr -  43840  43756   85  1  1   88   91    16 0.178   1.29
 4.07 Intr -  47507  47340  168  2  0   67   26   165 0.059   8.34
 4.06 Intr -  47850  47761   90  0  0   63   89    37 0.205   1.49
 4.05 Intr -  60974  60782  193  1  1   22   87   144 0.267   7.19
 4.04 Intr -  71694  71515  180  2  0  112   53    64 0.860   4.28
 4.03 Intr -  74407  74355   53  1  2  108   89    -6 0.834  -0.79
 4.02 Intr -  78081  77939  143  1  2   76   67   113 0.953   8.07
 4.01 Init -  81599  81551   49  2  1   62   86    76 0.689   5.91
 4.00 Prom -  83510  83471   40                              -7.06

 5.00 Prom +  96811  96850   40                              -6.76
 5.01 Sngl + 100001 100606  606  1  0   74   46   750 0.772  65.60
 5.02 PlyA + 101983 101988    6                               1.05

 6.06 PlyA - 104752 104747    6                               1.05
 6.05 Term - 112181 112098   84  2  0  134   47     4 0.412  -1.45
 6.04 Intr - 114811 114716   96  1  0   52   72    50 0.312   0.01
 6.03 Intr - 115802 115659  144  2  0   84   51    62 0.549   2.58
 6.02 Intr - 118053 117884  170  1  2  119   37    64 0.522   4.07
 6.01 Init - 125807 125759   49  2  1   86   89    23 0.141   1.32
 6.00 Prom - 139731 139692   40                              -4.06

 7.00 Prom + 144115 144154   40                              -3.86
 7.01 Sngl + 176466 176933  468  2  0  110   43   440 0.989  37.83
 7.02 PlyA + 177016 177021    6                               1.05

 8.00 Prom + 180246 180285   40                              -6.96
 8.01 Init + 184306 184453  148  0  1   89   85   223 0.890  22.35
 8.02 Intr + 189717 189802   86  1  2  103   92    73 0.991   8.74
 8.03 Intr + 192451 192596  146  0  2   92   46   184 0.956  13.68
 8.04 Intr + 192949 193308  360  1  0   28   90   278 0.790  16.34
 8.05 Intr + 193713 193857  145  0  1   70  100   110 0.930  10.68
 8.06 Intr + 193951 194154  204  0  0   78   47   259 0.974  20.20
 8.07 Intr + 196449 196536   88  2  1   79   88   156 0.569  14.24
 8.08 Intr + 199130 199227   98  0  2   24  100    34 0.035  -2.07
 8.09 Intr + 200224 200371  148  0  1   64   58    80 0.024   2.41

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  45662  45608   55  2  1   58   93    56 0.813   4.55
S.002 Init +  84927  84993   67  2  1   71   71    74 0.840   5.24


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:43299733_43500335|GENSCAN_predicted_peptide_1|126_aa
MLEKVSAPGAKNLQGIKDLEKFVESSIFAFAITTLISPYYTHGKRGPLSADRSLPQTPVA
FAPGLFRFCLFAGSIRTRKSPPAEPRLPQAEAAPGAESTAEATPSVKGRGMQIRNESPGT
PEEARV

>gi568815581f:43299733_43500335|GENSCAN_predicted_CDS_1|381_bp
atgctggagaaagtcagtgctccaggagctaaaaaccttcaaggaataaaagatctggaa
aaatttgtcgaatccagcatctttgccttcgccattaccaccctcatatcaccatattac
acccacggaaaacgtggaccgctctccgccgacaggtctcttccacagacccctgtcgcc
ttcgcccccggtctcttccggttctgtcttttcgctggctcgatacgaacaaggaagtcg
cccccagcggagccccggctcccccaggcagaggcggccccgggggcggagtcaacggcg
gaggccacgccctctgtgaaagggcggggcatgcaaattcgaaatgaaagcccgggaacg
ccggaagaagcacgggtgtaa

>gi568815581f:43299733_43500335|GENSCAN_predicted_peptide_2|249_aa
MPRLSLYDELLTDLNEFISPNQQNPAERYYQQPSQLYPPTFPQTLNSPAMQIENEMMQPE
KEALNYVFMQPGTEAPISTQPGEEALNSLPGNEALNPIPVQPCCRALNFLPIQPANRDIL
KEIVLGIQTAVLFNTNNQNFFNNKPHFLLYAHDAKKEITGWLNAIQNLILMAIPYGHFQF
LEDSSSRTSRSTTVFDLSDKCIEETLTFAVLPLHLGYHKGKGPLSSGHVTRVTYRSLEMT
GTPYPAPLP

>gi568815581f:43299733_43500335|GENSCAN_predicted_CDS_2|750_bp
atgccccggttatcgctttatgatgaacttttaactgatctgaatgaatttatttccccc
aaccagcaaaatccagctgaaagatattatcaacagccatcacagctgtaccctcctacc
tttcctcaaactctcaactctccagctatgcagatagaaaatgagatgatgcagcctgaa
aaagaggctctaaactatgttttcatgcagcctggtacagaggctccaatttctacacag
cccggtgaagaggctctcaattccctgcctggtaatgaggccctgaaccctatccctgtt
cagccctgctgtagagctctcaacttcttgcctattcagcctgccaatcgggacattcta
aaagaaattgtccttggcatacagaccgctgttcttttcaacaccaacaaccaaaatttt
ttcaacaacaagccccactttctactatatgcccacgatgccaaaaaggaaatcactggg
tggctcaatgccattcaaaatttgatattgatggcaatcccttacggtcacttccagttc
ttagaagacagcagtagcagaactagtaggagtaccacagtcttcgatctttctgataag
tgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaaggg
aaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcattggagatgact
ggcactccttaccctgcccccttgccttga

>gi568815581f:43299733_43500335|GENSCAN_predicted_peptide_3|112_aa
MKRIWLDYCLDCRYTWSWLRYSSKHLWYRLRSLIICLRSLIFRLRTLGSRVISHLLSRIS
GLWLILCHSNRSGRNVCNLLLMSSHGGGNSSGNRTRSQKEIRVLNRGRIKNL

>gi568815581f:43299733_43500335|GENSCAN_predicted_CDS_3|339_bp
atgaaaaggatctggttggactactgcctggactgcaggtatacctggagctggctgcgc
tacagcagcaagcatttatggtataggttgaggagcctgattatttgcctgaggagcctg
attttcaggctgcggaccttggggagccgtgtgatcagccacctgctgagcaggatcagc
gggctgtggctgatcctgtgccacagcaacaggagcggcaggaatgtatgtaacctgttg
cttatgagcagccatggtggtggcaacagcagtggtaaccggaccagaagccaaaaagag
attcgagttttgaatagaggaagaatcaagaacctgtaa

>gi568815581f:43299733_43500335|GENSCAN_predicted_peptide_4|338_aa
MEHMLLANHTDKATFTGRGWKATFDGCILHDDLLTKVHGFQSLIGLQQHLACGDSGSLMK
NCHDFPVACKTFSLKANSCHDRGIETIRGNFREFPGHIHPPPPRVTTTSTFPSGAVDEPS
VLLAKAHLPLGHRNPSIPPYLWQYKHLSIQVYRMCFTIESRTAFGFTWLCGMRYEDRCIQ
VYRLYFTAESDCRQICMTDCCIRFLRAPLKPQALLKRGPQLPWQPGFQAHERPAQQGHKI
THSPFILLSRRLILQLIKINSLIIKPLSRTIRLLREIIRLHNCLPLGHSQYLDFEKFAFT
VPTLNNIPPAAHYHWKVLPQVCRSRKESEDKSKVNDKQ

>gi568815581f:43299733_43500335|GENSCAN_predicted_CDS_4|1017_bp
atggaacacatgctccttgctaaccacacggacaaggccacgttcacaggacgggggtgg
aaggccaccttcgatgggtgcatcctccacgatgacctgctaacaaaggtgcatggattt
cagagtctgattggcctacaacagcatttggcttgtggagacagtggttccctgatgaaa
aactgccatgatttccccgtggcatgcaaaacgttctccctcaaagctaactcatgtcat
gacaggggaatagaaacaatcagaggaaacttccgtgagttcccaggacacatccaccca
cctcctccacgtgtaaccaccacctctaccttcccctctggtgctgtggatgagccatcc
gtgctcctggcaaaggcccacctgccacttgggcacaggaacccatccatccctccttac
ctctggcagtataaacatctttccattcaagtttaccgcatgtgtttcactatcgagagt
cggactgcttttggatttacgtggctttgtgggatgcggtatgaagatcgttgcattcaa
gtttaccgcctctacttcactgcagaatctgactgccgtcagatctgtatgacagattgt
tgcattcgttttctgcgggctcccttgaagcctcaggctctcttgaagcgtggtccacag
ttgccgtggcagcctggatttcaggcccatgaaagacctgctcagcagggtcacaaaatc
acccacagcccattcatcctgctcagcaggcggctgatcctgcagctcatcaagatcaac
agcctgataatcaagcccctcagccggacaatcaggctgctcagggaaataatcaggctc
cacaactgccttccgctggggcacagccagtacctggactttgaaaaatttgctttcaca
gttccaacccttaacaacatccctcctgcagcacattaccattggaaagtcctacctcaa
gtctgcagatcccgcaaggaatccgaagacaagtccaaagtcaacgacaagcaatga

>gi568815581f:43299733_43500335|GENSCAN_predicted_peptide_5|201_aa
MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
ERLYEMILKRKKAARGGKKRR

>gi568815581f:43299733_43500335|GENSCAN_predicted_CDS_5|606_bp
atggggaaccacttgactgagatggcgcccactgcctcctccttcttgccccacttccaa
gccctgcatgtcgtggtcattgggctggactctgctggaaagacctccctcctttaccgc
ctcaagttcaaggagtttgtccagagtgtccccaccaaaggcttcaacaccgagaagatc
cgggtgcccctcgggggatcgcgtggcatcaccttccaagtgtgggacgtcggggggcag
gagaagctgcgaccactgtggcgctcttatacccgccggacagacggtctagtgtttgtg
gtggacgctgcggaggctgagcggctggaggaagccaaggtggagttgcaccgaatcagc
cgggcctcggacaaccagggcgtgccagtgctggtgctggccaacaagcaggaccagccc
ggggcactgagcgctgctgaggtggagaagaggctggcagtccgagagctagcagccgcc
actctcactcatgtgcaaggctgcagcgctgtggacggtctgggcctgcagcagggcctt
gagcgcctctatgagatgatcctcaagaggaagaaggcagctcggggtggcaagaagaga
cggtga

>gi568815581f:43299733_43500335|GENSCAN_predicted_peptide_6|180_aa
MGFRHVDQAGLKLLTSDSPLCHTPTQPSAIRALNTQKGKTICAEREDRAREEGKGCSLPA
DVLQTELPVSVPRSSSPDRLARYLHQWLTLCPCLLHSPLSDIFKLFYFQTVFVIAISCLF
EGNKLSWFAQVPDISQDAGLSVPKLDKLSQLGLDSGTSTNRAVPEEKEVSALSPSTPPTP

>gi568815581f:43299733_43500335|GENSCAN_predicted_CDS_6|543_bp
atggggtttcgccatgtagaccaggctggtctcaaactcctgacctcagacagcccgctc
tgccacactcccacccagccctctgctatcagagctctgaacacccaaaaaggaaaaacg
atttgtgctgagcgcgaagacagagccagggaggaagggaagggctgctcgctgccagct
gacgttctgcagactgagctgcctgtgtctgtgccaaggtcctcaagtcctgatcgcctt
gctcgctatttgcaccagtggcttactctctgtccctgcctcctacactctccactgtca
gatattttcaagctgttttattttcagacagtcttcgtcattgccatcagctgcctattt
gagggcaacaaactgtcctggtttgcccaggttccagatatttctcaggatgcaggactt
tcagtgccaaaactagacaaattgagccagctgggactggactctggcacttctacaaat
agagctgtgccagaagaaaaggaagtttcagcactcagtccatccacaccccccaccccc
tga

>gi568815581f:43299733_43500335|GENSCAN_predicted_peptide_7|155_aa
MAKSKNHSTNNQSRKRHRNGIKKPRSRRYESLKGMDPKFPRNMCFAKKQNKKVLKKMQAN
SDKAMSARAEVIKALVKPKEVKLKIPKGVSCKLDRLAYIAHPKLGKRARARIAKGLRLCW
PKAKAKDQTKAQAAAPASVPAQAPKGAQAPTKASE

>gi568815581f:43299733_43500335|GENSCAN_predicted_CDS_7|468_bp
atggccaagtccaagaaccacagcacaaacaaccagtcccgaaaaaggcacagaaatggt
atcaagaaaccccgatcacgaagatatgaatctcttaaggggatggaccccaagttcccg
aggaacatgtgctttgccaagaagcaaaacaagaaggtcctaaagaagatgcaggccaac
agtgacaaggccatgagtgcacgtgctgaggttatcaaggccctcgtaaagcccaaggag
gttaagctcaagatcccaaagggtgtcagctgcaagctcgatcgacttgcctacattgcc
caccccaagcttgggaagcgggctcgtgcccgcattgccaaggggctcaggctgtgctgg
ccaaaggccaaggccaaggatcaaaccaaggcccaggctgcagctccagcttcagttcca
gctcaggctcccaaaggtgcccaggcccctacaaaggcttcagagtag

>gi568815581f:43299733_43500335|GENSCAN_predicted_peptide_8|475_aa
MAVAVAMAGALIGSEPGPAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKN
TTFDTFKASLVKNGAEFTTMLDEDDVKVAVDVLKELEALMPSAAGQEKQRDAEHRFVLSV
LSFGSLGDRTKKKKRSRSRDRNRDRDRDRERNRDRDHKRRHRSRSRSRSRTRERNKVKSR
YRSRSRSQSPPKDRKDRDKYGERNLDRWRDKHVDRPPPEEPTIGDIYNGKVTSIMQFGCF
VQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQE
TGEDLNPNRRRNLVGETNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWE
IKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSP
IKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDX

>gi568815581f:43299733_43500335|GENSCAN_predicted_CDS_8|1425_bp
atggctgtggctgtagccatggcgggagccttaatcgggtcggagccaggccccgcggaa
gaacttgccaaactcgagtacctgtctttggtgtcaaaggtttgcactgagctggacaat
cacttggggatcaacgacaaggaccttgctgaatttgtgatcagtcttgctgagaaaaat
accacctttgatacttttaaggcttctctcgtcaaaaatggtgcagaatttacgaccatg
ttggatgaagatgatgtgaaagttgctgtggatgtcctgaaagaactggaagctttaatg
cccagcgcagcaggccaggagaagcaaagagatgctgaacaccggtttgtccttagtgtc
ctgtcctttggaagtttaggggacaggacaaagaagaagaagcggagtcgaagccgagat
cgaaaccgagatcgagacagagatagggaacgaaaccgagatagagaccacaagcggaga
caccgatcccgctctcgatcacgttccaggacccgggagaggaataaagtgaagtctaga
tatcggtccaggagcaggagtcagagtccccccaaagaccggaaggaccgggacaaatat
ggagagcggaatctggatagatggcgggataagcatgtggaccgccctcctccagaagag
cccaccattggtgacatttataatggcaaagttaccagcatcatgcagtttggttgcttt
gtgcagctggaaggactaaggaagcggtgggaaggcctggtgcacatctctgagctccgg
cgggagggtcgtgtggccaatgtagctgatgtcgtgagcaaaggccagagggtcaaagtc
aaagtgctgtccttcactgggaccaagaccagcctgagcatgaaggatgtggatcaagag
actggagaagatctaaacccaaatagacggcgaaatcttgtcggggagaccaatgaggag
acctcaatgcggaatcctgatagacccactcacttgtcccttgtcagtgctcctgaagta
gaggacgactcactggaacgcaagcgcctcacccgaatctctgacccagagaagtgggag
atcaaacagatgattgctgccaatgtcctttccaaagaagaatttccagactttgatgaa
gagactggcattctccctaaggtggatgatgaagaagatgaggaccttgagattgaattg
gttgaggaagagcctccattcctgagagggcacactaagcaaagcatggacatgagcccc
attaaaattgtcaagaacccagacggctccctctcccaagcagcaatgatgcagagtgcc
ttggccaaagaaaggcgggaactcaaacaggcccagcgggaagctgagatggattctatt
cccatgggactcaacaaacactgggttgaccctctgcctgatgnn