Result of FASTA (ccds) for pF1KB8756
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8756, 200 aa
  1>>>pF1KB8756 200 - 200 aa - 200 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4144+/-0.000982; mu= 13.0334+/- 0.060
 mean_var=83.8257+/-17.765, 0's: 0 Z-trim(106.2): 179  B-trim: 737 in 2/48
 Lambda= 0.140083
 statistics sampled from 8654 (8860) to 8654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.272), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7          ( 200) 1305 273.3   7e-74
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2          ( 192)  921 195.7 1.5e-50
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2         ( 201)  921 195.7 1.6e-50
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17          ( 201)  819 175.1 2.6e-44
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3             ( 180)  515 113.6 7.4e-26
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12            ( 181)  505 111.6   3e-25
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14            ( 175)  504 111.4 3.4e-25
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7            ( 180)  499 110.4   7e-25
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1             ( 181)  498 110.2   8e-25
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3          ( 192)  495 109.6 1.3e-24
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10        ( 179)  453 101.1 4.4e-22
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5           ( 574)  442 99.3 4.9e-21
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12           ( 181)  427 95.8 1.7e-20
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2          ( 179)  426 95.6 1.9e-20
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13        ( 196)  413 93.0 1.3e-19
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5          ( 569)  410 92.8 4.3e-19
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10            ( 182)  401 90.6 6.4e-19
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3           ( 186)  387 87.8 4.6e-18
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5           ( 546)  388 88.3 9.1e-18
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11            ( 184)  364 83.1 1.2e-16
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17       ( 179)  358 81.9 2.6e-16
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 201)  348 79.9 1.2e-15
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2         ( 142)  339 78.0 3.1e-15
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1         ( 186)  331 76.4 1.2e-14
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3          ( 186)  325 75.2 2.7e-14
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 173)  315 73.2 1.1e-13
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3        ( 428)  297 69.9 2.6e-12
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5         ( 244)  289 68.0 5.2e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 154)  284 66.9 7.4e-12
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12           ( 135)  280 66.0 1.2e-11
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1        ( 147)  275 65.0 2.5e-11
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10         ( 198)  276 65.3 2.8e-11
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5         ( 204)  273 64.7 4.3e-11


>>CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7               (200 aa)
 initn: 1305 init1: 1305 opt: 1305  Z-score: 1439.9  bits: 273.3 E(32554): 7e-74
Smith-Waterman score: 1305; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
              130       140       150       160       170       180

              190       200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
       ::::::::::::::::::::
CCDS53 KLHDMIIKRRKMLRQQKKKR
              190       200

>>CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2               (192 aa)
 initn: 918 init1: 918 opt: 921  Z-score: 1020.8  bits: 195.7 E(32554): 1.5e-50
Smith-Waterman score: 921; 69.5% identity (91.6% similar) in 190 aa overlap (10-199:3-192)

               10        20        30        40        50        60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
                .: ::. .:::.:::.:::: ::::::::::.:::::::::: ::::::::
CCDS25        MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIK
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
       .. :..: .. ::::::::::::::::::.::::::..:::::::.:.:::::::::.:.
CCDS25 LSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTK
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
       ..::::.:.:..:::::: .:: ..:::: ::. ::  .: .:.::.:::::.:: ::..
CCDS25 FAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMD
           120       130       140       150       160       170   

              190       200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
       ::..::.:::: :.:.::. 
CCDS25 KLYEMILKRRKSLKQKKKR 
           180       190   

>>CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2              (201 aa)
 initn: 918 init1: 918 opt: 921  Z-score: 1020.5  bits: 195.7 E(32554): 1.6e-50
Smith-Waterman score: 921; 69.5% identity (91.6% similar) in 190 aa overlap (10-199:3-192)

               10        20        30        40        50        60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
                .: ::. .:::.:::.:::: ::::::::::.:::::::::: ::::::::
CCDS63        MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIK
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
       .. :..: .. ::::::::::::::::::.::::::..:::::::.:.:::::::::.:.
CCDS63 LSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTK
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
       ..::::.:.:..:::::: .:: ..:::: ::. ::  .: .:.::.:::::.:: ::..
CCDS63 FAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMD
           120       130       140       150       160       170   

              190       200        
pF1KB8 KLHDMIIKRRKMLRQQKKKR        
       ::..::.:::: :.:.::.         
CCDS63 KLYEMILKRRKSLKQKKKRTGDLRSCEV
           180       190       200 

>>CCDS11463.1 ARL4D gene_id:379|Hs108|chr17               (201 aa)
 initn: 818 init1: 800 opt: 819  Z-score: 909.1  bits: 175.1 E(32554): 2.6e-44
Smith-Waterman score: 819; 60.2% identity (86.1% similar) in 201 aa overlap (1-200:1-201)

               10         20        30        40        50         
pF1KB8 MGNGLSDQTSILSN-LPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKI
       ::: :....   :. :: ::..:.:..::: ::::..::::.:.:::..:::::::::::
CCDS11 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 KVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKIT
       .: ::.:. .::. :::::::::::::.:::: :::.:::::....::.::::.:::.:.
CCDS11 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 RISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGL
       : :.:::::::..:::::  ..:: .:.:: ::. ::...:  :.:   :. : ::..::
CCDS11 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
              130       140       150       160       170       180

     180       190       200
pF1KB8 EKLHDMIIKRRKMLRQQKKKR
       :.:..::.::.:  :  ::.:
CCDS11 ERLYEMILKRKKAARGGKKRR
              190       200 

>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3                  (180 aa)
 initn: 475 init1: 266 opt: 515  Z-score: 577.7  bits: 113.6 E(32554): 7.4e-26
Smith-Waterman score: 515; 44.2% identity (74.6% similar) in 181 aa overlap (9-189:6-180)

               10        20        30        40        50        60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
               .:..: : . ....:...::: :::::.::.:...:.:.:.:: :::.: ..
CCDS28    MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
             :.. :  ::::::...::::: : . :.:..::::: : ::..:.  ::.:.  
CCDS28 Y-----KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLL
             60        70        80        90       100       110  

              130       140       150       160       170       180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
       ..: . . .:. :::::: :....::.   :..  : . : :..: :::  : :: :::.
CCDS28 VDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRT-WYVQATCATQGTGLYEGLD
            120       130       140       150        160       170 

              190       200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
        : . . ::           
CCDS28 WLSNELSKR           
             180           

>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12                 (181 aa)
 initn: 462 init1: 274 opt: 505  Z-score: 566.7  bits: 111.6 E(32554): 3e-25
Smith-Waterman score: 505; 42.1% identity (73.7% similar) in 190 aa overlap (1-190:1-181)

               10        20        30        40        50        60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
       ::: ...   .:..: . . ..:...::: :::::.::.:...:.:.:.:: :::.: ..
CCDS87 MGNIFGN---LLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
             :...:  ::::::.:.::::. : . :.:..::::: : ::..::. :: ..  
CCDS87 Y-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA
             60        70        80        90       100       110  

              130       140       150       160       170       180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
        .: . . .:. :::::: :... .::   :..  :   . :..: :::  :::: :::.
CCDS87 EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLD
            120       130       140       150        160       170 

              190       200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
        : ... ...          
CCDS87 WLANQLKNKK          
             180           

>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14                 (175 aa)
 initn: 472 init1: 268 opt: 504  Z-score: 565.8  bits: 111.4 E(32554): 3.4e-25
Smith-Waterman score: 504; 44.8% identity (74.4% similar) in 172 aa overlap (11-182:4-169)

               10        20        30        40        50        60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
                 .::.. . . ..:..:::: :::::.::.:.... :.:.:: :::.: . 
CCDS96        MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
             :.: :. ::::::.:.::::. :   :.:..:::: .: .:..::. :::.:  
CCDS96 Y-----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN
                 60        70        80        90       100        

              130       140       150       160       170       180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
         : . . .:: :::::: ....  ::.. :.. .. . . :..::.::  :::: ::: 
CCDS96 DREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLT
      110       120       130       140        150       160       

              190       200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
        :                  
CCDS96 WLTSNYKS            
       170                 

>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7                 (180 aa)
 initn: 464 init1: 259 opt: 499  Z-score: 560.2  bits: 110.4 E(32554): 7e-25
Smith-Waterman score: 499; 42.5% identity (74.0% similar) in 181 aa overlap (9-189:6-180)

               10        20        30        40        50        60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
               ....: . . ....:...::: :::::.::.:...:.:.:.:: :::.: ..
CCDS34    MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
             :.. :  ::::::.:.::::. : . :.:..::::: : ::..:.  ::.:. .
CCDS34 Y-----KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ
             60        70        80        90       100       110  

              130       140       150       160       170       180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
        .: . . .:. :::::. :.. .::.   :.. .: : : :..: :::  : :: .::.
CCDS34 EDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRT-WYVQATCATQGTGLYDGLD
            120       130       140       150        160       170 

              190       200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
        :   . ::           
CCDS34 WLSHELSKR           
             180           

>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1                  (181 aa)
 initn: 460 init1: 274 opt: 498  Z-score: 559.1  bits: 110.2 E(32554): 8e-25
Smith-Waterman score: 498; 42.5% identity (73.7% similar) in 186 aa overlap (1-186:1-177)

               10        20        30        40        50        60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
       ::: ...   ....: . . ..:...::: :::::.::.:...:.:.:.:: :::.: ..
CCDS15 MGNIFAN---LFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
             :...:  ::::::.:.::::. : . :.:..::::: : ::..::. :: ..  
CCDS15 Y-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA
             60        70        80        90       100       110  

              130       140       150       160       170       180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
        .: . . .:. :::::: :... .::   :..  :   . :..: :::  :::: :::.
CCDS15 EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLD
            120       130       140       150        160       170 

              190       200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
        : ...              
CCDS15 WLSNQLRNQK          
             180           

>>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3               (192 aa)
 initn: 498 init1: 359 opt: 495  Z-score: 555.5  bits: 109.6 E(32554): 1.3e-24
Smith-Waterman score: 495; 40.1% identity (75.8% similar) in 182 aa overlap (10-191:3-180)

               10        20        30        40        50        60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
                :. :. :. .. ....:::: :::.:.::.:.. . ..:.:: :::.: :.
CCDS31        MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIE
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
       .  . : ::    ::::::::.: .:  : . :::.:.::::.: .:.::.. ....: .
CCDS31 LERNLSLTV----WDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILK
            60            70        80        90       100         

              130       140       150       160       170       180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
         . ..:::...:::::. ..:.  .: ... . .: :.  :..:: ::. :.:: .:..
CCDS31 NEHIKNVPVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFR
     110       120       130       140       150       160         

              190       200   
pF1KB8 KLHDMIIKRRKMLRQQKKKR   
       ::  .. .. :            
CCDS31 KLTGFVKSHMKSRGDTLAFFKQN
     170       180       190  




200 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:18:41 2016 done: Fri Nov  4 15:18:42 2016
 Total Scan time:  1.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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