Result of FASTA (ccds) for pF1KB8734
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8734, 551 aa
  1>>>pF1KB8734 551 - 551 aa - 551 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8125+/-0.000935; mu= -5.9677+/- 0.057
 mean_var=267.6187+/-54.248, 0's: 0 Z-trim(114.4): 48  B-trim: 30 in 1/52
 Lambda= 0.078400
 statistics sampled from 14966 (15007) to 14966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.461), width:  16
 Scan time:  4.050

The best scores are:                                      opt bits E(32554)
CCDS69579.1 MLLT3 gene_id:4300|Hs108|chr9          ( 565) 2580 304.9 1.6e-82
CCDS6494.1 MLLT3 gene_id:4300|Hs108|chr9           ( 568) 2580 304.9 1.6e-82
CCDS12160.1 MLLT1 gene_id:4298|Hs108|chr19         ( 559)  990 125.1 2.2e-28


>>CCDS69579.1 MLLT3 gene_id:4300|Hs108|chr9               (565 aa)
 initn: 2580 init1: 2580 opt: 2580  Z-score: 1594.9  bits: 304.9 E(32554): 1.6e-82
Smith-Waterman score: 3552; 97.0% identity (97.0% similar) in 564 aa overlap (5-551:2-565)

               10        20        30        40        50        60
pF1KB8 MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69    MCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KB8 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
        60        70        80        90       100       110       

              130       140       150       160       170          
pF1KB8 KLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSS-------
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS69 KLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
       120       130       140       150       160       170       

                     180       190       200       210       220   
pF1KB8 ----------TSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENK
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENK
       180       190       200       210       220       230       

           230       240       250       260       270       280   
pF1KB8 PLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKRKK
       240       250       260       270       280       290       

           290       300       310       320       330       340   
pF1KB8 SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD
       300       310       320       330       340       350       

           350       360       370       380       390       400   
pF1KB8 PNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESD
       360       370       380       390       400       410       

           410       420       430       440       450       460   
pF1KB8 EVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILE
       420       430       440       450       460       470       

           470       480       490       500       510       520   
pF1KB8 VKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITN
       480       490       500       510       520       530       

           530       540       550 
pF1KB8 TTFDFDLCSLDKTTVRKLQSYLETSGTS
       ::::::::::::::::::::::::::::
CCDS69 TTFDFDLCSLDKTTVRKLQSYLETSGTS
       540       550       560     

>>CCDS6494.1 MLLT3 gene_id:4300|Hs108|chr9                (568 aa)
 initn: 2580 init1: 2580 opt: 2580  Z-score: 1594.9  bits: 304.9 E(32554): 1.6e-82
Smith-Waterman score: 3574; 97.0% identity (97.0% similar) in 568 aa overlap (1-551:1-568)

               10        20        30        40        50        60
pF1KB8 MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB8 KLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSS-------
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS64 KLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
              130       140       150       160       170       180

                     180       190       200       210       220   
pF1KB8 ----------TSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENK
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENK
              190       200       210       220       230       240

           230       240       250       260       270       280   
pF1KB8 PLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKRKK
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KB8 SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD
              310       320       330       340       350       360

           350       360       370       380       390       400   
pF1KB8 PNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESD
              370       380       390       400       410       420

           410       420       430       440       450       460   
pF1KB8 EVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILE
              430       440       450       460       470       480

           470       480       490       500       510       520   
pF1KB8 VKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITN
              490       500       510       520       530       540

           530       540       550 
pF1KB8 TTFDFDLCSLDKTTVRKLQSYLETSGTS
       ::::::::::::::::::::::::::::
CCDS64 TTFDFDLCSLDKTTVRKLQSYLETSGTS
              550       560        

>>CCDS12160.1 MLLT1 gene_id:4298|Hs108|chr19              (559 aa)
 initn: 1485 init1: 831 opt: 990  Z-score: 623.0  bits: 125.1 E(32554): 2.2e-28
Smith-Waterman score: 1792; 54.7% identity (74.0% similar) in 578 aa overlap (1-550:1-559)

               10        20        30        40        50        60
pF1KB8 MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
       : ..:.:::.::::::::.:::::.:::::::::::::::. .:::::::::: ::.:::
CCDS12 MDNQCTVQVRLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFWLHDSFP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
       .:.::::.::::::::::::::.::::.:::::::::: : :::::.:::.:::::::::
CCDS12 KPRRVCKEPPYKVEESGYAGFIMPIEVHFKNKEEPRKVCFTYDLFLNLEGNPPVNHLRCE
               70        80        90       100       110       120

              130       140                      150       160     
pF1KB8 KLTFNNPTEDFRRKLLKAGG--------------DPNRSI-HTSSSSSSSSSSSSSSSSS
       :::::::: .:: :::.:::              .:.  .  :   :. :. .... : .
CCDS12 KLTFNNPTTEFRYKLLRAGGVMVMPEGADTVSRPSPDYPMLPTIPLSAFSDPKKTKPSHG
              130       140       150       160       170       180

         170       180       190       200       210       220     
pF1KB8 SSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENKPL
       :..... :.. :::::. :::.:.: ::: : ::. ::  :.. ::::..:.:  :..  
CCDS12 SKDANKESSKTSKPHKVTKEHRERPRKDS-ESKSSSKELEREQAKSSKDTSRKLGEGRLP
              190       200        210       220       230         

         230        240       250       260             270        
pF1KB8 KEEKIVP-KMAFKEPKPMSKEPKPDSNLLTITSGQDKKAP------SKRPPISDSEELSA
       ::::  : : ::::::   :: : .:.  .  .:     :      ::::  .:: . ::
CCDS12 KEEKAPPPKAAFKEPKMALKETKLEST--SPKGGPPPPPPPPPRASSKRPATADSPKPSA
     240       250       260         270       280       290       

      280       290       300        310       320       330       
pF1KB8 KKRKKSSSEALFKSFSSAPPLILTCS-ADKKQIKDKSHVKMGKVKIESETSEKKKSTLPP
       ::.:::::..  .. ...:    . : .:::  :::: ..  ::: :::  : ::.    
CCDS12 KKQKKSSSKGSRSAPGTSPRTSSSSSFSDKKPAKDKSSTRGEKVKAESEPREAKKA----
       300       310       320       330       340       350       

       340       350       360       370           380       390   
pF1KB8 FDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSS----FTPSQTRQQGPLRSIMKDL
           .. ..:. :.. : ::.: : ::..:::::.::    : :::...::::::...::
CCDS12 ----LEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSDSDFEPSQNHSQGPLRSMVEDL
               360       370       380       390       400         

           400       410       420       430       440       450   
pF1KB8 HSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPL
       .:    ::::: .:...  :    .: :  :. :.:.:: :.:..:. ::   .::::: 
CCDS12 QS----EESDE-DDSSSGEEAAGKTNPG--RDSRLSFSD-SESDNSADSSLPSREPPPPQ
     410            420       430         440        450       460 

            460       470       480       490       500       510  
pF1KB8 LKTN-NNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNL
            :...   .:: . :: .: .:.:  :::: :::::::::::.::::..:::::::
CCDS12 KPPPPNSKVSGRRSPESCSKPEKILKKGTYDKAYTDELVELHRRLMALRERNVLQQIVNL
             470       480       490       500       510       520 

            520       530       540       550 
pF1KB8 IEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS
       :::::::..::::::::: :::.:::::::: ::. .: 
CCDS12 IEETGHFNVTNTTFDFDLFSLDETTVRKLQSCLEAVAT 
             530       540       550          




551 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:04:12 2016 done: Fri Nov  4 15:04:12 2016
 Total Scan time:  4.050 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com