FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8719, 476 aa
  1>>>pF1KB8719 476 - 476 aa - 476 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6655+/-0.000739; mu= 8.5910+/- 0.045
 mean_var=141.3420+/-28.788, 0's: 0 Z-trim(114.0): 8  B-trim: 0 in 0/53
 Lambda= 0.107879
 statistics sampled from 14577 (14581) to 14577 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.448), width:  16
 Scan time:  3.810

The best scores are:                                      opt bits E(32554)
CCDS13756.1 DGCR14 gene_id:8220|Hs108|chr22        ( 476) 3131 498.4 6.9e-141


>>CCDS13756.1 DGCR14 gene_id:8220|Hs108|chr22             (476 aa)
 initn: 3131 init1: 3131 opt: 3131  Z-score: 2642.9  bits: 498.4 E(32554): 6.9e-141
Smith-Waterman score: 3131; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476)

               10        20        30        40        50        60
pF1KB8 METPGASASSLLLPAASRPPRKREAGEAGAATSKQRVLDEEEYIEGLQTVIQRDFFPDVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 METPGASASSLLLPAASRPPRKREAGEAGAATSKQRVLDEEEYIEGLQTVIQRDFFPDVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KLQAQKEYLEAEENGDLERMRQIAIKFGSALGKMSREPPPPYVTPATFETPEVHAGTGVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLQAQKEYLEAEENGDLERMRQIAIKFGSALGKMSREPPPPYVTPATFETPEVHAGTGVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GNKPRPRGRGLEDGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKERSRARHAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GNKPRPRGRGLEDGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKERSRARHAW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LYQAEEEFEKRQKDNLELPSAEHQAIESSQASVETWKYKAKNSLMYYPEGVPDEEQLFKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LYQAEEEFEKRQKDNLELPSAEHQAIESSQASVETWKYKAKNSLMYYPEGVPDEEQLFKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PRQVVHKNTRFLRDPFSQALSRCQLQQAAALNAQHKQGKVGPDGKELIPQESPRVGGFGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PRQVVHKNTRFLRDPFSQALSRCQLQQAAALNAQHKQGKVGPDGKELIPQESPRVGGFGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 VATPSPAPGVNESPMMTWGEVENTPLRVEGSETPYVDRTPGPAFKILEPGRRERLGLKMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VATPSPAPGVNESPMMTWGEVENTPLRVEGSETPYVDRTPGPAFKILEPGRRERLGLKMA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 NEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTDRALRASYTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTDRALRASYTP
              370       380       390       400       410       420

              430       440       450       460       470      
pF1KB8 SPARSTHLKTPASGLQTPTSTPAPGSATRTPLTQDPASITDNLLQLPARRKASDFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPARSTHLKTPASGLQTPTSTPAPGSATRTPLTQDPASITDNLLQLPARRKASDFF
              430       440       450       460       470      




476 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:53:28 2016 done: Fri Nov  4 14:53:29 2016
 Total Scan time:  3.810 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]