GENSCAN 1.0	Date run:  4-Nov-116	Time: 14:40:55

Sequence gi568815586f:12713368_12929551 : 216184 bp : 44.59% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4473   4947  475  2  1   53   47   489 0.644  36.94
 1.02 Term +   5458   5579  122  2  2   39   41    96 0.445  -1.36
 1.03 PlyA +   6123   6128    6                               1.05

 2.00 Prom +  53150  53189   40                              -3.26
 2.01 Sngl +  73392  74285  894  2  0   27   54  1376 0.202 122.24
 2.02 PlyA +  77698  77703    6                               1.05

 3.00 Prom +  82851  82890   40                              -6.36
 3.01 Init + 100001 100087   87  1  0   91   85    79 0.960   8.54
 3.02 Intr + 100764 100857   94  2  1   29  100    54 0.966   0.24
 3.03 Intr + 107841 108029  189  1  0  101  103    81 0.981  10.46
 3.04 Intr + 108598 108716  119  2  2   71   83   128 0.999  10.78
 3.05 Intr + 109294 109365   72  0  0   89   62    89 0.984   6.00
 3.06 Intr + 109836 109952  117  2  0   87   93    17 0.869   2.76
 3.07 Intr + 110503 110649  147  0  0   59  110     5 0.510   0.23
 3.08 Intr + 111173 111310  138  1  0   61  113    98 0.992  10.26
 3.09 Intr + 112633 112703   71  0  2  105   98    33 0.995   3.98
 3.10 Intr + 113879 114008  130  2  1   69   68   150 0.969  11.80
 3.11 Term + 116056 116187  132  0  0  126   37   184 0.991  15.19
 3.12 PlyA + 116587 116592    6                               1.05

 4.00 Prom + 120821 120860   40                              -2.96
 4.01 Init + 122357 122541  185  1  2   99   75    23 0.246   0.70
 4.02 Term + 126490 126583   94  1  1   77   54    89 0.805   1.70
 4.03 PlyA + 126990 126995    6                               1.05

 5.00 Prom + 136814 136853   40                              -2.66
 5.01 Sngl + 137498 138337  840  1  0   86   49   518 0.697  43.45
 5.02 PlyA + 138989 138994    6                               1.05

 6.00 Prom + 144741 144780   40                              -6.16
 6.01 Sngl + 162132 162743  612  2  0   96   52   956 0.890  87.00
 6.02 PlyA + 162748 162753    6                               1.05

 7.08 PlyA - 166378 166373    6                               1.05
 7.07 Term - 172472 172416   57  2  0   87   44    67 0.068  -0.11
 7.06 Intr - 177349 177262   88  0  1  118   18    41 0.171   0.07
 7.05 Intr - 178349 178131  219  1  0   84   72   110 0.639   6.42
 7.04 Intr - 179521 179439   83  1  2  104   64    68 0.906   4.44
 7.03 Intr - 187104 187069   36  0  0  121  108   -21 0.688   1.66
 7.02 Intr - 188011 187893  119  2  2   99  107   -41 0.350  -0.92
 7.01 Init - 190843 190690  154  1  1   58   63    86 0.474   3.24
 7.00 Prom - 193291 193252   40                              -4.16

 8.00 Prom + 193319 193358   40                             -11.14
 8.01 Init + 194883 195804  922  2  1   75   87   990 0.962  91.74
 8.02 Intr + 198717 198775   59  1  2  133  111    66 0.999  12.00
 8.03 Intr + 203041 203149  109  0  1   47   24    77 0.050  -2.94
 8.04 Intr + 208442 208489   48  0  0  123   83    -4 0.038   1.25
 8.05 Intr + 214337 214436  100  0  1   97  103    52 0.021   6.77

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 149921 149826   96  1  0   95   74    76 0.856   6.02


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:12713368_12929551|GENSCAN_predicted_peptide_1|198_aa
MSNVRVSNGSPSLERMDARQAEHPKPSACRNLFGPVDHEELTRDLEKHCRDMEEASQRKW
NFDFQNHKPLEGKYEWQEVEKGSLPEFYYRPPRPPKGACKVPAQESQDVSGSRPAAPLIG
APANSEDTHLVDPKTDPSDSQTGLAEQCAGIRKRPATDDSSTQNKRANRTEENVSDGSPN
AGSVEQTPKKPGLRRRQT

>gi568815586f:12713368_12929551|GENSCAN_predicted_CDS_1|597_bp
atgtcaaacgtgcgagtgtctaacgggagccctagcctggagcggatggacgccaggcag
gcggagcaccccaagccctcggcctgcaggaacctcttcggcccggtggaccacgaagag
ttaacccgggacttggagaagcactgcagagacatggaagaggcgagccagcgcaagtgg
aatttcgattttcagaatcacaaacccctagagggcaagtacgagtggcaagaggtggag
aagggcagcttgcccgagttctactacagacccccgcggccccccaaaggtgcctgcaag
gtgccggcgcaggagagccaggatgtcagcgggagccgcccggcggcgcctttaattggg
gctccggctaactctgaggacacgcatttggtggacccaaagactgatccgtcggacagc
cagacggggttagcggagcaatgcgcaggaataaggaagcgacctgcaaccgacgattct
tctactcaaaacaaaagagccaacagaacagaagaaaatgtttcagacggttccccaaat
gccggttctgtggagcagacgcccaagaagcctggcctcagaagacgtcaaacgtaa

>gi568815586f:12713368_12929551|GENSCAN_predicted_peptide_2|297_aa
MIHWKQTRSPSVAVAAPLNSCQVPAGVRAAGRERRLARRLQADRVSMSPQGMERPAAREP
HGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAI
VGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQEIAATCQDQM
REILSCLEFFCRWQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLIPRRAEGDTKVS
QAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISADQRAGLFF

>gi568815586f:12713368_12929551|GENSCAN_predicted_CDS_2|894_bp
atgatccactggaaacagacccgttcccctagcgtggcagtggctgctccgctgaactcg
tgccaagttcccgctggcgtccgggcagcagggcgggagcggcggctggcacggagactc
caggctgaccgcgtgtctatgtccccgcagggaatggagaggccggcggcccgggagccg
catgggcccgacgcgctgcggcgcttccagggactgctgctggaccgccgaggccggctg
cacggccaggtgctgcgcctgcgcgaggtggcccggcgcctggagcgcctgcgcaggcgc
tccctcgtagccaacgtggccggcagctcgctgagcgcaacgggcgccctcgccgccatc
gtggggctctcgctcagcccggtcaccctggggacctcgctgctggtgtcggccgtgggg
ctgggggtggccacagccggaggggccgtcaccatcacgtccgatctctcgctgatcttc
tgcaactcccgggagctgcggagggtgcaggagatcgcggccacctgccaggaccagatg
cgagagatcctgagctgcctcgagtttttctgccgctggcagggctgcggggaccgccag
ctgctgcagtgcgggaggaacgcctccatcgccctgtacaattctgtctacttcatcgtc
ttctttggctcacgtggcttcctcatccccaggcgggcggagggggacaccaaggttagc
caggccgtgctgaaggccaagattcagaaactggccgagagcctggagtcctgcaccggg
gctctggacgaactcagcgagcagctggagtctcgggttcagctctgcaccaagtccagt
cgtggccacgacctcaagatctctgctgaccagcgtgcagggctgtttttctga

>gi568815586f:12713368_12929551|GENSCAN_predicted_peptide_3|431_aa
MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ
GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG
VQSATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF
SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN
SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS
RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGK
KLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKV
AGGKMKKRKGR

>gi568815586f:12713368_12929551|GENSCAN_predicted_CDS_3|1296_bp
atggcggcacccgaggaacacgattctccgaccgaagcgtcccagccgattgtggaagag
gaggaaactaaaacatttaaagacctgggtgtgacagatgtgttgtgtgaagcttgtgac
cagttgggatggacaaaacccaccaagatccagattgaagctattcctttggccttacaa
ggtcgtgatatcattgggcttgcagaaactggctctggaaagacaggcgcctttgctttg
cccattctaaacgcactgctggagaccccgcagcgtttgtttgccctagttcttaccccg
actcgggagctggcctttcagatctcagagcagtttgaagccctggggtcctctattgga
gtgcagagtgcaactcctggtcgactgattgaccacttggaaaatacgaaaggtttcaac
ttgagagctctcaaatacttggtcatggatgaagccgaccgaatactgaatatggatttt
gagacagaggttgacaagatcctcaaagtgattcctcgagatcggaaaacattcctcttc
tctgccaccatgaccaagaaggttcaaaaacttcagcgagcagctctgaagaatcctgtg
aaatgtgccgtttcctctaaataccagacagttgaaaaattacagcaatattatattttt
attccctctaaattcaaggatacctacctggtttatattctaaatgaattggctggaaac
tcctttatgatattctgcagcacctgtaataatacccagagaacagctttgctactgcga
aatcttggcttcactgccatccccctccatggacaaatgagtcagagtaagcgcctagga
tcccttaataagtttaaggccaaggcccgttccattcttctagcaactgacgttgccagc
cgaggtttggacatacctcatgtagatgtggttgtcaactttgacattcctacccattcc
aaggattacatccatcgagtaggtcgaacagctagagctgggcgctccggaaaggctatt
acttttgtcacacagtatgatgtggaactcttccagcgcatagaacacttaattgggaag
aaactaccaggttttccaacacaggatgatgaggttatgatgctgacagaacgcgtcgct
gaagcccaaaggtttgcccgaatggagttaagggagcatggagaaaagaagaaacgctcg
cgagaggatgctggagataatgatgacacagagggtgctattggtgtcaggaacaaggtg
gctggaggaaaaatgaagaagcggaaaggccgttaa

>gi568815586f:12713368_12929551|GENSCAN_predicted_peptide_4|92_aa
MQSLGGGPQGLLRVLELLFARSHPSPYTIQTQRMSPVTVTLQSSASAVKEAGRSRRNWER
NSIYVWVNSELCVITKGSLEGDERALQGQVSD

>gi568815586f:12713368_12929551|GENSCAN_predicted_CDS_4|279_bp
atgcagtctctaggaggtgggccccaaggtctgctcagagtcttggagcttttgtttgct
cgtagccatccatccccttataccatccaaacacaaaggatgtctcctgtcactgtcacc
cttcaatcatctgccagtgccgtcaaagaggccggaaggagcaggaggaattgggaaagg
aacagcatctatgtctgggtgaactcagaattatgtgtgatcaccaagggcagccttgaa
ggggacgagagggccctacaaggacaagtctctgactga

>gi568815586f:12713368_12929551|GENSCAN_predicted_peptide_5|279_aa
MVESKGGARHVLHGGKQERSRGELPLESHQVLEAFSCFKMKLNISFPVTGCQKLIEVDDE
CKLRTFYEKLMATEVAADTLGEEWKGYVVRISGGNNKQGFPMKQGVLTHGRVHLLLSKGH
SCYRPRRTGERKRKSVRGCIVDANLSILNLIIVKKKKKVKKDIPGLTDTMVPCRLGPKKA
SRICKLSNLSEEDDVRQYVVRKPSNKGGKKPRTKAPKIQHLVTPHFLQHKGQHIALKKPC
TKKNKEEAAEYAKLLGKGMKEAKEKRQEQIAKRHRLSSL

>gi568815586f:12713368_12929551|GENSCAN_predicted_CDS_5|840_bp
atggtggaaagcaaaggaggagcaaggcatgtcttacatggtggcaagcaagagagaagt
agaggggaactccctttagaaagccatcaggtcttggaggcattcagctgcttcaagatg
aagctgaacatctccttcccggtcactggctgccagaaactcattgaagtggatgatgaa
tgcaaacttcgtactttttatgagaagcttatggccacagaagttgctgctgacactctg
ggtgaagaatggaaaggttatgtggtccgaatcagtggtgggaacaacaaacaaggtttt
cccatgaagcagggtgtcttgacccatggccgtgtccacctgctactgagtaaggggcat
tcctgttacagaccaaggagaactggagaaagaaagagaaaatcagttcgtggttgcata
gtggatgccaatctgagcattctcaacttgattattgttaaaaaaaaaaaaaaagtaaag
aaggatattcctggactgactgatactatggtgccttgtcgcctggggcccaaaaaagct
agcagaatctgcaaactttccaatctctctgaagaagatgatgtccgccagtatgttgta
agaaagccctcaaacaaaggaggtaagaaacctaggaccaaagcacccaagattcagcat
cttgttactccacatttcctgcagcacaaagggcagcatattgctctgaagaagccgtgt
actaagaaaaataaggaagaggctgcagaatatgctaaacttttaggcaagggaatgaag
gaggctaaagagaagcgccaggaacaaattgcgaagagacacagactttcctctctgtga

>gi568815586f:12713368_12929551|GENSCAN_predicted_peptide_6|203_aa
MAEVQVLVLDGRGHLLGHLAAIVAKQVLLGRKVVVVCCEGINISGNFYRNKLKYLAFLRK
RMNSNPSRGPYPLQAPSRIFWQTMRGMPPHKTKPGQAALDCLKVFDGIPPPYDKKKRMVV
PAALKVVRLKPARKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQFMRLWKQ
AEKNVEKKIDKYTEVLKTHGLLV

>gi568815586f:12713368_12929551|GENSCAN_predicted_CDS_6|612_bp
atggcggaggtacaggtcctggtgcttgatggtcgaggccatctcctgggccacctggcg
gccatcgtggctaaacaggtactgctgggccggaaggtggtggttgtatgctgtgaaggc
atcaacatttctggcaatttctacagaaacaagttgaagtacctggctttcctccgcaag
cggatgaacagcaacccttcccgaggcccctaccccctccaggcccccagccgcatcttc
tggcagaccatgcgaggtatgccgccccacaagaccaagccaggccaggccgctctggac
tgcctcaaggtgtttgacggcatcccaccgccctacgacaagaaaaagcggatggtggtt
cctgctgccctcaaggttgtgcgtctgaagcctgcaagaaagtttgcctatctggggcgc
ctggctcacgaggttggctggaagtaccaggcagtgacagccaccctggaggagaagagg
aaagagaaagccaagatccactaccggaagaagaaacagttcatgaggctatggaaacag
gccgagaagaacgtggagaagaaaattgacaaatacacagaagtcctcaagacccacgga
ctcctggtctga

>gi568815586f:12713368_12929551|GENSCAN_predicted_peptide_7|251_aa
MRALPGYTVNVEEEDPISFKGGERKELRPCALHCVSPHPGRLITRVLSSRKGCQKLHFGS
EIRSAWPCLNPAPILVAAGGSQESMNPEVLLGEGVSAARLCEQPIVSEVAEVFPFRNEPT
AVADSAEPFNRRFKSGGPSALGSWRLTYPSAKALAVNLVLLPARKRAAGELLSAGGDLGQ
LSRPRTLSSCYKGGPRRREGTSEGIKPIGPKLVFVYVWNDPGVAARLCRGSSQQQYTFEM
YTFEIFAYASM

>gi568815586f:12713368_12929551|GENSCAN_predicted_CDS_7|756_bp
atgagggctctcccaggctacaccgtgaatgtggaagaggaagaccctatttccttcaag
ggcggcgagcggaaggaactcaggccctgtgcacttcactgtgtctctccacaccccggc
agattaatcaccagggtgttgtctagcaggaaaggctgccaaaaattgcactttgggtct
gagattaggagcgcctggccatgtctgaaccccgctcctatcttagtggccgcaggtggc
tcccaggaaagcatgaatcctgaggttttactgggagaaggggtttcagctgccaggctg
tgtgaacaacccattgtgtctgaagtagctgaagtgttccccttcaggaatgaacccaca
gcagtggctgattcggccgaacccttcaacagacgatttaaatccggaggccccagcgct
ctgggctcctggcgcctcacttaccctagtgccaaggcgttggccgtgaacttggtgctg
cttcccgcgcgcaagagggcagcaggcgagctcctcagtgctgggggagaccttggacag
ctatcccgccctcgcactctgagcagttgttataaaggcggccctcgccggagggaggga
acgagcgaggggatcaagccaatcggaccgaaactcgtctttgtttacgtgtggaacgat
cctggagtggctgcccgcctgtgtcggggctcaagccagcaacaatacacctttgaaatg
tacacctttgaaatttttgcatatgccagcatgtga

>gi568815586f:12713368_12929551|GENSCAN_predicted_peptide_8|413_aa
MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCKVQDSN
RRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLT
KLVRGRKPLSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLL
LTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRRW
DDTILSSALAANGWVFLLAYVSPEFWLLTKQRNPMDYPVEDAFCKPQLVKKSYGVENRAY
SQEEITQGFEETGDTLYAPYSTHFQLQMALTLQASTLMASQPCKGSHLKSVSCVGHQAEL
QTPSENGNALHSWDGPSPFSAGRPLRKCGQPTPREESGEKEHKTPEACQRIKP

>gi568815586f:12713368_12929551|GENSCAN_predicted_CDS_8|1239_bp
atggctacaacagtccctgatggttgccgcaatggcctgaaatccaagtactacagactt
tgtgataaggctgaagcttggggcatcgtcctagaaacggtggccacagccggggttgtg
acctcggtggccttcatgctcactctcccgatcctcgtctgcaaggtgcaggactccaac
aggcgaaaaatgctgcctactcagtttctcttcctcctgggtgtgttgggcatctttggc
ctcaccttcgccttcatcatcggactggacgggagcacagggcccacacgcttcttcctc
tttgggatcctcttttccatctgcttctcctgcctgctggctcatgctgtcagtctgacc
aagctcgtccgggggaggaagcccctttccctgttggtgattctgggtctggccgtgggc
ttcagcctagtccaggatgttatcgctattgaatatattgtcctgaccatgaataggacc
aacgtcaatgtcttttctgagctttccgctcctcgtcgcaatgaagactttgtcctcctg
ctcacctacgtcctcttcttgatggcgctgaccttcctcatgtcctccttcaccttctgt
ggttccttcacgggctggaagagacatggggcccacatctacctcacgatgctcctctcc
attgccatctgggtggcctggatcaccctgctcatgcttcctgactttgaccgcaggtgg
gatgacaccatcctcagctccgccttggctgccaatggctgggtgttcctgttggcttat
gttagtcccgagttttggctgctcacaaagcaacgaaaccccatggattatcctgttgag
gatgctttctgtaaacctcaactcgtgaagaagagctatggtgtggagaacagagcctac
tctcaagaggaaatcactcaaggttttgaagagacaggggacacgctctatgccccctat
tccacacattttcagctgcagatggcgctgacacttcaggcatcaaccctcatggcctct
cagccttgcaaaggcagccacttaaagtcggtgtcctgtgtggggcaccaagctgagctg
cagacacccagtgaaaatggaaatgctcttcactcttgggatgggccctcaccttttagt
gctggcaggccactgcgcaagtgtggacagcctacaccaagggaagagtcaggggagaag
gaacacaagactccggaagcatgccagcgtataaaaccn