Result of FASTA (omim) for pF1KB8678
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8678, 376 aa
  1>>>pF1KB8678 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3288+/-0.000461; mu= 16.0092+/- 0.029
 mean_var=62.4163+/-12.348, 0's: 0 Z-trim(109.0): 39  B-trim: 60 in 1/49
 Lambda= 0.162340
 statistics sampled from 17154 (17192) to 17154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.202), width:  16
 Scan time:  7.290

The best scores are:                                      opt bits E(85289)
NP_005727 (OMIM: 605143) alpha-centractin [Homo sa ( 376) 2488 591.8 8.5e-169
NP_005726 (OMIM: 605144) beta-centractin [Homo sap ( 376) 2344 558.1 1.2e-158
XP_016858605 (OMIM: 605144) PREDICTED: beta-centra ( 332) 2035 485.7 6.6e-137
XP_005263911 (OMIM: 605144) PREDICTED: beta-centra ( 302) 1847 441.6 1.1e-123
NP_005150 (OMIM: 102540,612098,612794,613424) acti ( 377) 1429 343.8 3.9e-94
NP_001186883 (OMIM: 102560,604717,614583) actin, c ( 375) 1427 343.3 5.4e-94
NP_001605 (OMIM: 102560,604717,614583) actin, cyto ( 375) 1427 343.3 5.4e-94
NP_001092 (OMIM: 102630,243310,607371,608578) acti ( 375) 1426 343.1 6.3e-94
NP_001091 (OMIM: 102610,161800,255310,616852) acti ( 377) 1424 342.6 8.8e-94
NP_001135417 (OMIM: 102620,611788,613834,614042) a ( 377) 1421 341.9 1.4e-93
NP_001307784 (OMIM: 102620,611788,613834,614042) a ( 377) 1421 341.9 1.4e-93
NP_001604 (OMIM: 102620,611788,613834,614042) acti ( 377) 1421 341.9 1.4e-93
NP_001606 (OMIM: 102545) actin, gamma-enteric smoo ( 376) 1418 341.2 2.3e-93
NP_001017992 (OMIM: 614835) beta-actin-like protei ( 376) 1399 336.8 5.1e-92
XP_016859649 (OMIM: 608914) PREDICTED: POTE ankyri ( 657) 1358 327.3 6.4e-89
XP_011509518 (OMIM: 608914) PREDICTED: POTE ankyri ( 957) 1358 327.3 8.9e-89
XP_016859648 (OMIM: 608914) PREDICTED: POTE ankyri ( 967) 1358 327.3   9e-89
NP_001077007 (OMIM: 608914) POTE ankyrin domain fa (1075) 1358 327.4 9.8e-89
XP_016859650 (OMIM: 608914) PREDICTED: POTE ankyri (1075) 1358 327.4 9.8e-89
NP_001186822 (OMIM: 102545) actin, gamma-enteric s ( 333) 1102 267.2   4e-71
NP_115876 (OMIM: 608534) actin-related protein T3  ( 372) 1065 258.5 1.8e-68
NP_536356 (OMIM: 608535) actin-related protein T2  ( 377) 1036 251.7   2e-66
NP_005713 (OMIM: 604221) actin-related protein 2 i ( 394) 1001 243.6 6.1e-64
NP_612146 (OMIM: 300487) actin-related protein T1  ( 376)  999 243.1 8.1e-64
NP_001005386 (OMIM: 604221) actin-related protein  ( 399)  990 241.0 3.7e-63
NP_006678 (OMIM: 604303) actin-like protein 7A [Ho ( 435)  922 225.1 2.5e-58
NP_006677 (OMIM: 604304) actin-like protein 7B [Ho ( 415)  897 219.2 1.4e-56
NP_005712 (OMIM: 604222) actin-related protein 3 i ( 418)  501 126.5 1.1e-28
NP_001264069 (OMIM: 604222) actin-related protein  ( 367)  482 122.0 2.2e-27
NP_057272 (OMIM: 612458) actin-like protein 6B [Ho ( 426)  410 105.2   3e-22
NP_817126 (OMIM: 604958) actin-like protein 6A iso ( 387)  337 88.0 3.9e-17
NP_829888 (OMIM: 604958) actin-like protein 6A iso ( 387)  337 88.0 3.9e-17
NP_004292 (OMIM: 604958) actin-like protein 6A iso ( 429)  337 88.1 4.3e-17


>>NP_005727 (OMIM: 605143) alpha-centractin [Homo sapien  (376 aa)
 initn: 2488 init1: 2488 opt: 2488  Z-score: 3151.4  bits: 591.8 E(85289): 8.5e-169
Smith-Waterman score: 2488; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB8 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSK
              310       320       330       340       350       360

              370      
pF1KB8 KEYEEDGARSIHRKTF
       ::::::::::::::::
NP_005 KEYEEDGARSIHRKTF
              370      

>>NP_005726 (OMIM: 605144) beta-centractin [Homo sapiens  (376 aa)
 initn: 2344 init1: 2344 opt: 2344  Z-score: 2969.2  bits: 558.1 E(85289): 1.2e-158
Smith-Waterman score: 2344; 90.4% identity (98.9% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB8 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
       :::::.::::::::::::::::::::::::::::::::::::::.::::::::::.::::
NP_005 MESYDIIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
       :::::::::.::::::::.:.:::::::::::::::::::::::::::::::::::: ::
NP_005 KAEEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 REKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
       ::.:::::::::.::: ::::: :::.:.:::.:..::::::::::::::::.:::::.:
NP_005 MRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVL
       : ::::::...::.:::::::::.:::.:.::::.:::..:::.:::::::::::.::::
NP_005 YTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSK
       :::::::::::::::::::::::::.::.:::::::::::::::::::::::::::::::
NP_005 SGGSTLFKGFGDRLLSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSK
              310       320       330       340       350       360

              370      
pF1KB8 KEYEEDGARSIHRKTF
       :::::::.:.::::::
NP_005 KEYEEDGSRAIHRKTF
              370      

>>XP_016858605 (OMIM: 605144) PREDICTED: beta-centractin  (332 aa)
 initn: 2035 init1: 2035 opt: 2035  Z-score: 2578.9  bits: 485.7 E(85289): 6.6e-137
Smith-Waterman score: 2035; 89.5% identity (98.8% similar) in 332 aa overlap (45-376:1-332)

           20        30        40        50        60        70    
pF1KB8 DNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGPKAEEHRGLLSIRYP
                                     .::::::::::.:::::::::::::.::::
XP_016                               MRVMAGALEGDLFIGPKAEEHRGLLTIRYP
                                             10        20        30

           80        90       100       110       120       130    
pF1KB8 MEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKNRERAAEVFFETFNV
       ::::.:.:::::::::::::::::::::::::::::::::::: ::::.:::::::::::
XP_016 MEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNV
               40        50        60        70        80        90

          140       150       160       170       180       190    
pF1KB8 PALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVSRFL
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::.:
XP_016 PALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYL
              100       110       120       130       140       150

          200       210       220       230       240       250    
pF1KB8 RLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTIEIGPS
       :: ::::: :::.:.:::.:..::::::::::::::::.:::::.:: ::::::...::.
XP_016 RLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTLDVGPA
              160       170       180       190       200       210

          260       270       280       290       300       310    
pF1KB8 RFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVLSGGSTLFKGFGDRL
       :::::::::.:::.:.::::.:::..:::.:::::::::::.::::::::::::::::::
XP_016 RFRAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVLSGGSTLFKGFGDRL
              220       230       240       250       260       270

          320       330       340       350       360       370    
pF1KB8 LSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRK
       :::::::::::.::.::::::::::::::::::::::::::::::::::::::.:.::::
XP_016 LSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRK
              280       290       300       310       320       330

         
pF1KB8 TF
       ::
XP_016 TF
         

>>XP_005263911 (OMIM: 605144) PREDICTED: beta-centractin  (302 aa)
 initn: 1847 init1: 1847 opt: 1847  Z-score: 2341.6  bits: 441.6 E(85289): 1.1e-123
Smith-Waterman score: 1847; 89.4% identity (98.7% similar) in 302 aa overlap (75-376:1-302)

           50        60        70        80        90       100    
pF1KB8 VRVMAGALEGDIFIGPKAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSE
                                     ::::.:.:::::::::::::::::::::::
XP_005                               MEHGVVRDWNDMERIWQYVYSKDQLQTFSE
                                             10        20        30

          110       120       130       140       150       160    
pF1KB8 EHPVLLTEAPLNPRKNRERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGV
       ::::::::::::: ::::.:::::::::::::::::::::::::::::::::::::::::
XP_005 EHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGV
               40        50        60        70        80        90

          170       180       190       200       210       220    
pF1KB8 THAVPIYEGFAMPHSIMRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYL
       ::::::::::::::::::.:::::::::.::: ::::: :::.:.:::.:..::::::::
XP_005 THAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYL
              100       110       120       130       140       150

          230       240       250       260       270       280    
pF1KB8 SINPQKDETLETEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQ
       ::::::::.:::::.:: ::::::...::.:::::::::.:::.:.::::.:::..:::.
XP_005 SINPQKDEALETEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVVAFAIH
              160       170       180       190       200       210

          290       300       310       320       330       340    
pF1KB8 KSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGG
       :::::::::::.:::::::::::::::::::::::::::::.::.:::::::::::::::
XP_005 KSDMDLRRTLFANIVLSGGSTLFKGFGDRLLSEVKKLAPKDIKIKISAPQERLYSTWIGG
              220       230       240       250       260       270

          350       360       370      
pF1KB8 SILASLDTFKKMWVSKKEYEEDGARSIHRKTF
       :::::::::::::::::::::::.:.::::::
XP_005 SILASLDTFKKMWVSKKEYEEDGSRAIHRKTF
              280       290       300  

>>NP_005150 (OMIM: 102540,612098,612794,613424) actin, a  (377 aa)
 initn: 1421 init1: 571 opt: 1429  Z-score: 1811.0  bits: 343.8 E(85289): 3.9e-94
Smith-Waterman score: 1429; 53.7% identity (82.1% similar) in 369 aa overlap (12-376:10-377)

               10        20        30        40        50        60
pF1KB8 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
                  .: :::::..:::::::. :.  ::. ::::.:  ::.:  . : ..: 
NP_005   MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
       .:. .::.:...::.::::. .:.:::.::....  ..:..  ::::.:::::::::. :
NP_005 EAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFY-NELRVAPEEHPTLLTEAPLNPKAN
       60        70        80        90        100       110       

              130       140       150       160       170       180
pF1KB8 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
       ::. ....::::::::.....::::::::.:::::.:::::::::: ::::::.:.::.:
NP_005 REKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAI
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB8 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
       ::.:.::::.. .:   : ..::.: ...: :::. :::. ::.... ... .  . ...
NP_005 MRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSS
       180       190       200       210       220       230       

                  250       260       270       280       290      
pF1KB8 ----YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFS
           : ::::..: ::  ::: :: ::.:..:: :: ::::.   .:.: :.:.:. :..
NP_005 LEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYA
       240       250       260       270       280       290       

        300       310       320       330       340       350      
pF1KB8 NIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKM
       : :::::.:.. :..::. .:.  :::. .::.: :: :: ::.::::::::::.::..:
NP_005 NNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
       300       310       320       330       340       350       

        360       370      
pF1KB8 WVSKKEYEEDGARSIHRKTF
       :.::.::.: :   .::: :
NP_005 WISKQEYDEAGPSIVHRKCF
       360       370       

>>NP_001186883 (OMIM: 102560,604717,614583) actin, cytop  (375 aa)
 initn: 1422 init1: 570 opt: 1427  Z-score: 1808.5  bits: 343.3 E(85289): 5.4e-94
Smith-Waterman score: 1427; 53.4% identity (82.7% similar) in 369 aa overlap (12-376:8-375)

               10        20        30        40        50        60
pF1KB8 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
                  .:::::::. :::::::. :.  ::. ::::.:  ::.:  . : ..: 
NP_001     MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB8 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
       .:. .::.:...::.::::: .:.:::.::....  ..:..  ::::::::::::::. :
NP_001 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKAN
         60        70        80        90        100       110     

              130       140       150       160       170       180
pF1KB8 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
       ::. ....:::::.::.....::::::::.:::::.:.::::::::.::::::.:.::.:
NP_001 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAI
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB8 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
       .:.:.::::.. .:   : ..::.: ...: :::. :::. ::.... ... .  . ...
NP_001 LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSS
         180       190       200       210       220       230     

                  250       260       270       280       290      
pF1KB8 ----YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFS
           : ::::..: ::  ::: :: ::.:...: :: ::::.   .:.: :.:.:. :..
NP_001 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYA
         240       250       260       270       280       290     

        300       310       320       330       340       350      
pF1KB8 NIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKM
       : :::::.:.. :..::. .:.  :::. .::.: :: :: ::.::::::::::.::..:
NP_001 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
         300       310       320       330       340       350     

        360       370      
pF1KB8 WVSKKEYEEDGARSIHRKTF
       :.::.::.:.:   .::: :
NP_001 WISKQEYDESGPSIVHRKCF
         360       370     

>>NP_001605 (OMIM: 102560,604717,614583) actin, cytoplas  (375 aa)
 initn: 1422 init1: 570 opt: 1427  Z-score: 1808.5  bits: 343.3 E(85289): 5.4e-94
Smith-Waterman score: 1427; 53.4% identity (82.7% similar) in 369 aa overlap (12-376:8-375)

               10        20        30        40        50        60
pF1KB8 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
                  .:::::::. :::::::. :.  ::. ::::.:  ::.:  . : ..: 
NP_001     MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB8 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
       .:. .::.:...::.::::: .:.:::.::....  ..:..  ::::::::::::::. :
NP_001 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKAN
         60        70        80        90        100       110     

              130       140       150       160       170       180
pF1KB8 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
       ::. ....:::::.::.....::::::::.:::::.:.::::::::.::::::.:.::.:
NP_001 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAI
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB8 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
       .:.:.::::.. .:   : ..::.: ...: :::. :::. ::.... ... .  . ...
NP_001 LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSS
         180       190       200       210       220       230     

                  250       260       270       280       290      
pF1KB8 ----YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFS
           : ::::..: ::  ::: :: ::.:...: :: ::::.   .:.: :.:.:. :..
NP_001 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYA
         240       250       260       270       280       290     

        300       310       320       330       340       350      
pF1KB8 NIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKM
       : :::::.:.. :..::. .:.  :::. .::.: :: :: ::.::::::::::.::..:
NP_001 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
         300       310       320       330       340       350     

        360       370      
pF1KB8 WVSKKEYEEDGARSIHRKTF
       :.::.::.:.:   .::: :
NP_001 WISKQEYDESGPSIVHRKCF
         360       370     

>>NP_001092 (OMIM: 102630,243310,607371,608578) actin, c  (375 aa)
 initn: 1412 init1: 570 opt: 1426  Z-score: 1807.2  bits: 343.1 E(85289): 6.3e-94
Smith-Waterman score: 1426; 53.1% identity (82.7% similar) in 369 aa overlap (12-376:8-375)

               10        20        30        40        50        60
pF1KB8 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
                  .:.:::::. :::::::. :.  ::. ::::.:  ::.:  . : ..: 
NP_001     MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB8 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
       .:. .::.:...::.::::: .:.:::.::....  ..:..  ::::::::::::::. :
NP_001 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKAN
         60        70        80        90        100       110     

              130       140       150       160       170       180
pF1KB8 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
       ::. ....:::::.::.....::::::::.:::::.:.::::::::.::::::.:.::.:
NP_001 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAI
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB8 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
       .:.:.::::.. .:   : ..::.: ...: :::. :::. ::.... ... .  . ...
NP_001 LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSS
         180       190       200       210       220       230     

                  250       260       270       280       290      
pF1KB8 ----YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFS
           : ::::..: ::  ::: :: ::.:...: :: ::::.   .:.: :.:.:. :..
NP_001 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYA
         240       250       260       270       280       290     

        300       310       320       330       340       350      
pF1KB8 NIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKM
       : :::::.:.. :..::. .:.  :::. .::.: :: :: ::.::::::::::.::..:
NP_001 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
         300       310       320       330       340       350     

        360       370      
pF1KB8 WVSKKEYEEDGARSIHRKTF
       :.::.::.:.:   .::: :
NP_001 WISKQEYDESGPSIVHRKCF
         360       370     

>>NP_001091 (OMIM: 102610,161800,255310,616852) actin, a  (377 aa)
 initn: 1416 init1: 571 opt: 1424  Z-score: 1804.7  bits: 342.6 E(85289): 8.8e-94
Smith-Waterman score: 1424; 53.1% identity (82.1% similar) in 369 aa overlap (12-376:10-377)

               10        20        30        40        50        60
pF1KB8 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
                  .: :::::..:::::::. :.  ::. ::::.:  ::.:  . : ..: 
NP_001   MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
       .:. .::.:...::.::::. .:.:::.::....  ..:..  ::::.:::::::::. :
NP_001 EAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFY-NELRVAPEEHPTLLTEAPLNPKAN
       60        70        80        90        100       110       

              130       140       150       160       170       180
pF1KB8 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
       ::. ....::::::::.....::::::::.:::::.:::::::::: ::::::.:.::.:
NP_001 REKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAI
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB8 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
       ::.:.::::.. .:   : ..::.: ...: :::. :::. ::.... ... .  . ...
NP_001 MRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSS
       180       190       200       210       220       230       

                  250       260       270       280       290      
pF1KB8 ----YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFS
           : ::::..: ::  ::: :: ::.:..:: :: ::::.   .:.: :.:.:. :..
NP_001 LEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYA
       240       250       260       270       280       290       

        300       310       320       330       340       350      
pF1KB8 NIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKM
       : :.:::.:.. :..::. .:.  :::. .::.: :: :: ::.::::::::::.::..:
NP_001 NNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
       300       310       320       330       340       350       

        360       370      
pF1KB8 WVSKKEYEEDGARSIHRKTF
       :..:.::.: :   .::: :
NP_001 WITKQEYDEAGPSIVHRKCF
       360       370       

>>NP_001135417 (OMIM: 102620,611788,613834,614042) actin  (377 aa)
 initn: 1413 init1: 571 opt: 1421  Z-score: 1800.9  bits: 341.9 E(85289): 1.4e-93
Smith-Waterman score: 1421; 53.7% identity (81.6% similar) in 369 aa overlap (12-376:10-377)

               10        20        30        40        50        60
pF1KB8 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
                  .: :::::. :::::::. :.  ::. ::::.:  ::.:  . : ..: 
NP_001   MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
       .:. .::.:...::.::::. .:.:::.::.. .  ..:..  ::::.:::::::::. :
NP_001 EAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFY-NELRVAPEEHPTLLTEAPLNPKAN
       60        70        80        90        100       110       

              130       140       150       160       170       180
pF1KB8 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
       ::. ....::::::::.....::::::::.:::::.:::::::::: ::::::.:.::.:
NP_001 REKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAI
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB8 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
       ::.:.::::.. .:   : ..::.: ...: :::. :::. ::.... ... .  . ...
NP_001 MRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSS
       180       190       200       210       220       230       

                  250       260       270       280       290      
pF1KB8 ----YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFS
           : ::::..: ::  ::: :: ::.:..:: :: ::::.   .:.: :.:.:. :..
NP_001 LEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYA
       240       250       260       270       280       290       

        300       310       320       330       340       350      
pF1KB8 NIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKM
       : :::::.:.. :..::. .:.  :::. .::.: :: :: ::.::::::::::.::..:
NP_001 NNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
       300       310       320       330       340       350       

        360       370      
pF1KB8 WVSKKEYEEDGARSIHRKTF
       :.::.::.: :   .::: :
NP_001 WISKQEYDEAGPSIVHRKCF
       360       370       




376 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:30:44 2016 done: Fri Nov  4 14:30:45 2016
 Total Scan time:  7.290 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com