FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8671, 396 aa
  1>>>pF1KB8671 396 - 396 aa - 396 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4580+/-0.000356; mu= 16.5096+/- 0.022
 mean_var=72.0471+/-14.503, 0's: 0 Z-trim(113.7): 24  B-trim: 0 in 0/52
 Lambda= 0.151101
 statistics sampled from 23123 (23147) to 23123 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.271), width:  16
 Scan time:  7.570

The best scores are:                                      opt bits E(85289)
NP_037473 (OMIM: 611175) obg-like ATPase 1 isoform ( 396) 2657 588.5 9.6e-168
NP_001315617 (OMIM: 611175) obg-like ATPase 1 isof ( 375) 1650 368.9 1.1e-101
NP_001011708 (OMIM: 611175) obg-like ATPase 1 isof ( 238) 1576 352.7 5.5e-97


>>NP_037473 (OMIM: 611175) obg-like ATPase 1 isoform 1 [  (396 aa)
 initn: 2657 init1: 2657 opt: 2657  Z-score: 3132.5  bits: 588.5 E(85289): 9.6e-168
Smith-Waterman score: 2657; 99.7% identity (99.7% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KB8 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 FHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 PEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NKWLIKIKEWVDKCDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGF
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
NP_037 NKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 AALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 AALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSEN
              310       320       330       340       350       360

              370       380       390      
pF1KB8 AVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKKK
       ::::::::::::::::::::::::::::::::::::
NP_037 AVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKKK
              370       380       390      

>>NP_001315617 (OMIM: 611175) obg-like ATPase 1 isoform   (375 aa)
 initn: 2495 init1: 1650 opt: 1650  Z-score: 1946.5  bits: 368.9 E(85289): 1.1e-101
Smith-Waterman score: 2460; 94.7% identity (94.7% similar) in 396 aa overlap (1-396:1-375)

               10        20        30        40        50        60
pF1KB8 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NKWLIKIKEWVDKCDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGF
       ::           :          ::::::::::::::::::::::::::::::::::::
NP_001 NK-----------C----------GALELKLQELSAEERQKYLEANMTQSALPKIIKAGF
                                   250       260       270         

              310       320       330       340       350       360
pF1KB8 AALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSEN
     280       290       300       310       320       330         

              370       380       390      
pF1KB8 AVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKKK
       ::::::::::::::::::::::::::::::::::::
NP_001 AVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKKK
     340       350       360       370     

>>NP_001011708 (OMIM: 611175) obg-like ATPase 1 isoform   (238 aa)
 initn: 1576 init1: 1576 opt: 1576  Z-score: 1862.3  bits: 352.7 E(85289): 5.5e-97
Smith-Waterman score: 1576; 99.6% identity (99.6% similar) in 238 aa overlap (159-396:1-238)

      130       140       150       160       170       180        
pF1KB8 DDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCK
                                     ::::::::::::::::::::::::::::::
NP_001                               MIGPIIDKLEKVAVRGGDKKLKPEYDIMCK
                                             10        20        30

      190       200       210       220       230       240        
pF1KB8 VKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIK
               40        50        60        70        80        90

      250       260       270       280       290       300        
pF1KB8 EWVDKCDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYF
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYF
              100       110       120       130       140       150

      310       320       330       340       350       360        
pF1KB8 FTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKY
              160       170       180       190       200       210

      370       380       390      
pF1KB8 RQQGRNYIVEDGDIIFFKFNTPQQPKKK
       ::::::::::::::::::::::::::::
NP_001 RQQGRNYIVEDGDIIFFKFNTPQQPKKK
              220       230        




396 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:25:29 2016 done: Fri Nov  4 14:25:30 2016
 Total Scan time:  7.570 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]