Result of FASTA (ccds) for pF1KB8670
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8670, 464 aa
  1>>>pF1KB8670 464 - 464 aa - 464 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3861+/-0.000763; mu= 18.0530+/- 0.046
 mean_var=75.0508+/-15.392, 0's: 0 Z-trim(109.7): 39  B-trim: 394 in 2/49
 Lambda= 0.148046
 statistics sampled from 11036 (11074) to 11036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.34), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS5577.1 RCC1L gene_id:81554|Hs108|chr7          ( 464) 3167 685.6 2.9e-197
CCDS64683.1 RCC1L gene_id:81554|Hs108|chr7         ( 454) 3006 651.2 6.3e-187
CCDS64684.1 RCC1L gene_id:81554|Hs108|chr7         ( 358) 2377 516.8 1.4e-146
CCDS82939.1 HERC3 gene_id:8916|Hs108|chr4          ( 368)  432 101.4 1.7e-21
CCDS34028.1 HERC3 gene_id:8916|Hs108|chr4          (1050)  432 101.7 3.9e-21
CCDS60541.1 HERC4 gene_id:26091|Hs108|chr10        ( 979)  401 95.1 3.6e-19
CCDS7274.1 HERC4 gene_id:26091|Hs108|chr10         (1049)  401 95.1 3.8e-19
CCDS41533.1 HERC4 gene_id:26091|Hs108|chr10        (1057)  401 95.1 3.8e-19
CCDS54777.1 HERC6 gene_id:55008|Hs108|chr4         ( 986)  397 94.2 6.6e-19
CCDS47098.1 HERC6 gene_id:55008|Hs108|chr4         (1022)  397 94.2 6.7e-19
CCDS73571.1 RCBTB2 gene_id:1102|Hs108|chr13        ( 527)  375 89.3   1e-17
CCDS9411.1 RCBTB2 gene_id:1102|Hs108|chr13         ( 551)  375 89.3 1.1e-17
CCDS73572.1 RCBTB2 gene_id:1102|Hs108|chr13        ( 556)  375 89.3 1.1e-17
CCDS3630.1 HERC5 gene_id:51191|Hs108|chr4          (1024)  326 79.0 2.5e-14
CCDS7828.1 SERGEF gene_id:26297|Hs108|chr11        ( 458)  303 73.9 3.9e-13
CCDS9418.1 RCBTB1 gene_id:55213|Hs108|chr13        ( 531)  299 73.1   8e-13
CCDS14246.1 RPGR gene_id:6103|Hs108|chrX           ( 815)  276 68.3 3.4e-11
CCDS35229.1 RPGR gene_id:6103|Hs108|chrX           (1152)  276 68.4 4.5e-11


>>CCDS5577.1 RCC1L gene_id:81554|Hs108|chr7               (464 aa)
 initn: 3167 init1: 3167 opt: 3167  Z-score: 3655.1  bits: 685.6 E(32554): 2.9e-197
Smith-Waterman score: 3167; 99.6% identity (99.6% similar) in 464 aa overlap (1-464:1-464)

               10        20        30        40        50        60
pF1KB8 MALVALVAGARLGRRLSGPGLGRGHWTAARRSRSRREAAEAEAEVPVVQYVGERAARADR
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS55 MALVALVAGARLGRRLSGPGLGRGHWTAAGRSRSRREAAEAEAEVPVVQYVGERAARADR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQD
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS55 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHRMQDFDGQVVQVACGQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
              370       380       390       400       410       420

              430       440       450       460    
pF1KB8 NIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI
              430       440       450       460    

>>CCDS64683.1 RCC1L gene_id:81554|Hs108|chr7              (454 aa)
 initn: 3250 init1: 3006 opt: 3006  Z-score: 3469.4  bits: 651.2 E(32554): 6.3e-187
Smith-Waterman score: 3006; 98.9% identity (99.1% similar) in 443 aa overlap (1-443:1-443)

               10        20        30        40        50        60
pF1KB8 MALVALVAGARLGRRLSGPGLGRGHWTAARRSRSRREAAEAEAEVPVVQYVGERAARADR
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS64 MALVALVAGARLGRRLSGPGLGRGHWTAAGRSRSRREAAEAEAEVPVVQYVGERAARADR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQD
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS64 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHRMQDFDGQVVQVACGQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
              370       380       390       400       410       420

              430       440       450       460    
pF1KB8 NIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI
       :::::::::::::::::::.  :                     
CCDS64 NIRGCLGIGRLEDQYFPWRAPAPSASAKTTGPLL          
              430       440       450              

>>CCDS64684.1 RCC1L gene_id:81554|Hs108|chr7              (358 aa)
 initn: 2377 init1: 2377 opt: 2377  Z-score: 2744.8  bits: 516.8 E(32554): 1.4e-146
Smith-Waterman score: 2377; 99.4% identity (99.4% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KB8 MALVALVAGARLGRRLSGPGLGRGHWTAARRSRSRREAAEAEAEVPVVQYVGERAARADR
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS64 MALVALVAGARLGRRLSGPGLGRGHWTAAGRSRSRREAAEAEAEVPVVQYVGERAARADR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQD
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS64 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHRMQDFDGQVVQVACGQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS64 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNDTWPQS  
              310       320       330       340       350          

              370       380       390       400       410       420
pF1KB8 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK

>>CCDS82939.1 HERC3 gene_id:8916|Hs108|chr4               (368 aa)
 initn: 394 init1: 258 opt: 432  Z-score: 499.5  bits: 101.4 E(32554): 1.7e-21
Smith-Waterman score: 438; 31.2% identity (58.1% similar) in 308 aa overlap (158-462:22-312)

       130       140       150       160       170       180       
pF1KB8 VTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSL
                                     : ::.  ..  ::     : .:.::  ::.
CCDS82          MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRS----VKEVACGGNHSV
                        10        20        30            40       

       190       200       210       220       230       240       
pF1KB8 VLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFLTD
        : .   :.. : :. :: :..   :.     ... ..   : ....::::..::: :.:
CCDS82 FLLEDGEVYTCGLNTKGQLGHEREGNK----PEQIGALA--DQHIIHVACGESHSLALSD
        50        60        70            80          90       100 

       250       260       270       280       290       300       
pF1KB8 KGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGW
       .:...: : :.::: ::   . . .  .:   :   ...::.  .  :::..::: .: :
CCDS82 RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTW
             110       120       130       140       150       160 

       310       320        330       340       350       360      
pF1KB8 GNSEYLQLASVTD-STQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILG
       :.. . ::.   .  .:..  :   . :.  . :.: ::.   .:.  : :: ::..  :
CCDS82 GKNSHGQLGLGKEFPSQASPQRVRSLEGI-PLAQVAAGGAHSFALSLSGAVFGWGMNNAG
             170       180       190        200       210       220

        370       380       390       400       410       420      
pF1KB8 KGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGKNIRGCL
       .   :  :   .   :    : . .   .:  : ::  : :.::..: .:..: .  : :
CCDS82 Q---LGLSDEKDRESPCHVKLLRTQ---KVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL
                 230       240          250       260       270    

        430       440         450       460                        
pF1KB8 GIGRLEDQYFPWRVT--MPGEPVDVACGVDHMVTLAKSFI                    
       :   ..:.  : ::   : .: ...::: .: .... :                      
CCDS82 GHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCN
          280       290       300       310       320       330    

CCDS82 VKCPSPVKGYWAAHSGQLSARAGKNDCLWNLKVF
          340       350       360        

>>CCDS34028.1 HERC3 gene_id:8916|Hs108|chr4               (1050 aa)
 initn: 394 init1: 258 opt: 432  Z-score: 493.0  bits: 101.7 E(32554): 3.9e-21
Smith-Waterman score: 438; 31.2% identity (58.1% similar) in 308 aa overlap (158-462:22-312)

       130       140       150       160       170       180       
pF1KB8 VTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSL
                                     : ::.  ..  ::     : .:.::  ::.
CCDS34          MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRS----VKEVACGGNHSV
                        10        20        30            40       

       190       200       210       220       230       240       
pF1KB8 VLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFLTD
        : .   :.. : :. :: :..   :.     ... ..   : ....::::..::: :.:
CCDS34 FLLEDGEVYTCGLNTKGQLGHEREGNK----PEQIGALA--DQHIIHVACGESHSLALSD
        50        60        70            80          90       100 

       250       260       270       280       290       300       
pF1KB8 KGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGW
       .:...: : :.::: ::   . . .  .:   :   ...::.  .  :::..::: .: :
CCDS34 RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTW
             110       120       130       140       150       160 

       310       320        330       340       350       360      
pF1KB8 GNSEYLQLASVTD-STQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILG
       :.. . ::.   .  .:..  :   . :.  . :.: ::.   .:.  : :: ::..  :
CCDS34 GKNSHGQLGLGKEFPSQASPQRVRSLEGI-PLAQVAAGGAHSFALSLSGAVFGWGMNNAG
             170       180       190        200       210       220

        370       380       390       400       410       420      
pF1KB8 KGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGKNIRGCL
       .   :  :   .   :    : . .   .:  : ::  : :.::..: .:..: .  : :
CCDS34 Q---LGLSDEKDRESPCHVKLLRTQ---KVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL
                 230       240          250       260       270    

        430       440         450       460                        
pF1KB8 GIGRLEDQYFPWRVT--MPGEPVDVACGVDHMVTLAKSFI                    
       :   ..:.  : ::   : .: ...::: .: .... :                      
CCDS34 GHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCN
          280       290       300       310       320       330    

CCDS34 VKCPSPVKGYWAAHSGQLSARADRFKYHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMN
          340       350       360       370       380       390    

>>CCDS60541.1 HERC4 gene_id:26091|Hs108|chr10             (979 aa)
 initn: 418 init1: 226 opt: 401  Z-score: 457.6  bits: 95.1 E(32554): 3.6e-19
Smith-Waterman score: 464; 31.2% identity (57.9% similar) in 349 aa overlap (96-440:23-341)

          70        80        90       100       110       120     
pF1KB8 FSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTLLSSKT
                                     ..:    . ..... ...::   :..   .
CCDS60         MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVF---V
                       10        20        30        40            

         130       140       150       160       170       180     
pF1KB8 ADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAH
        :   :.  : :  .::: ..:::          .:  : . ::  .   .. ::::.::
CCDS60 LDDGTVYTCGCNDLGQLGHEKSRK----------KPEQV-VALDAQN---IVAVSCGEAH
      50        60        70                   80           90     

         190       200       210       220       230       240     
pF1KB8 SLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFL
       .:.:.:.  :.. : .: :: :  :  .:     . .....:.  :.::::::  ::: :
CCDS60 TLALNDKGQVYAWGLDSDGQLGL-VGSEECIRVPRNIKSLSDI--QIVQVACGYYHSLAL
         100       110        120       130         140       150  

         250         260       270       280       290       300   
pF1KB8 TDKGEVYSCGWGAD--GQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGG
       .  .::. : :: .  :: :::     ..  .:  .: :.  .:::. :   .... .:.
CCDS60 SKASEVF-C-WGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGA
             160        170       180       190       200       210

           310       320       330       340       350       360   
pF1KB8 LFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYG
       .:::: ... ::. ..: ..  ::  :.     :.    ::    :.:. :: ::..: :
CCDS60 IFGWGRNKFGQLG-LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAG
              220        230       240       250       260         

            370       380       390       400       410        420 
pF1KB8 ILGK-GPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALT-NKGELFVWGKN
         :. : :   :.  :. :  .:   :.   : :..: :: .: .:.. ..:... .: .
CCDS60 GYGQLGHN---STSHEINPRKVF---ELMGSI-VTEIACGRQHTSAFVPSSGRIYSFGLG
     270          280          290        300       310       320  

             430       440       450       460                     
pF1KB8 IRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI                 
         : :: :   ..  :. :                                         
CCDS60 GNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEEYFCVKRIFSGGDQSFSHYSSPQ
            330       340       350       360       370       380  

>>CCDS7274.1 HERC4 gene_id:26091|Hs108|chr10              (1049 aa)
 initn: 418 init1: 226 opt: 401  Z-score: 457.2  bits: 95.1 E(32554): 3.8e-19
Smith-Waterman score: 464; 31.2% identity (57.9% similar) in 349 aa overlap (96-440:23-341)

          70        80        90       100       110       120     
pF1KB8 FSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTLLSSKT
                                     ..:    . ..... ...::   :..   .
CCDS72         MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVF---V
                       10        20        30        40            

         130       140       150       160       170       180     
pF1KB8 ADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAH
        :   :.  : :  .::: ..:::          .:  : . ::  .   .. ::::.::
CCDS72 LDDGTVYTCGCNDLGQLGHEKSRK----------KPEQV-VALDAQN---IVAVSCGEAH
      50        60        70                   80           90     

         190       200       210       220       230       240     
pF1KB8 SLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFL
       .:.:.:.  :.. : .: :: :  :  .:     . .....:.  :.::::::  ::: :
CCDS72 TLALNDKGQVYAWGLDSDGQLGL-VGSEECIRVPRNIKSLSDI--QIVQVACGYYHSLAL
         100       110        120       130         140       150  

         250         260       270       280       290       300   
pF1KB8 TDKGEVYSCGWGAD--GQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGG
       .  .::. : :: .  :: :::     ..  .:  .: :.  .:::. :   .... .:.
CCDS72 SKASEVF-C-WGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGA
             160        170       180       190       200       210

           310       320       330       340       350       360   
pF1KB8 LFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYG
       .:::: ... ::. ..: ..  ::  :.     :.    ::    :.:. :: ::..: :
CCDS72 IFGWGRNKFGQLG-LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAG
              220        230       240       250       260         

            370       380       390       400       410        420 
pF1KB8 ILGK-GPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALT-NKGELFVWGKN
         :. : :   :.  :. :  .:   :.   : :..: :: .: .:.. ..:... .: .
CCDS72 GYGQLGHN---STSHEINPRKVF---ELMGSI-VTEIACGRQHTSAFVPSSGRIYSFGLG
     270          280          290        300       310       320  

             430       440       450       460                     
pF1KB8 IRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI                 
         : :: :   ..  :. :                                         
CCDS72 GNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEEYFCVKRIFSGGDQSFSHYSSPQ
            330       340       350       360       370       380  

>>CCDS41533.1 HERC4 gene_id:26091|Hs108|chr10             (1057 aa)
 initn: 418 init1: 226 opt: 401  Z-score: 457.2  bits: 95.1 E(32554): 3.8e-19
Smith-Waterman score: 464; 31.2% identity (57.9% similar) in 349 aa overlap (96-440:23-341)

          70        80        90       100       110       120     
pF1KB8 FSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTLLSSKT
                                     ..:    . ..... ...::   :..   .
CCDS41         MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVF---V
                       10        20        30        40            

         130       140       150       160       170       180     
pF1KB8 ADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAH
        :   :.  : :  .::: ..:::          .:  : . ::  .   .. ::::.::
CCDS41 LDDGTVYTCGCNDLGQLGHEKSRK----------KPEQV-VALDAQN---IVAVSCGEAH
      50        60        70                   80           90     

         190       200       210       220       230       240     
pF1KB8 SLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFL
       .:.:.:.  :.. : .: :: :  :  .:     . .....:.  :.::::::  ::: :
CCDS41 TLALNDKGQVYAWGLDSDGQLGL-VGSEECIRVPRNIKSLSDI--QIVQVACGYYHSLAL
         100       110        120       130         140       150  

         250         260       270       280       290       300   
pF1KB8 TDKGEVYSCGWGAD--GQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGG
       .  .::. : :: .  :: :::     ..  .:  .: :.  .:::. :   .... .:.
CCDS41 SKASEVF-C-WGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGA
             160        170       180       190       200       210

           310       320       330       340       350       360   
pF1KB8 LFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYG
       .:::: ... ::. ..: ..  ::  :.     :.    ::    :.:. :: ::..: :
CCDS41 IFGWGRNKFGQLG-LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAG
              220        230       240       250       260         

            370       380       390       400       410        420 
pF1KB8 ILGK-GPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALT-NKGELFVWGKN
         :. : :   :.  :. :  .:   :.   : :..: :: .: .:.. ..:... .: .
CCDS41 GYGQLGHN---STSHEINPRKVF---ELMGSI-VTEIACGRQHTSAFVPSSGRIYSFGLG
     270          280          290        300       310       320  

             430       440       450       460                     
pF1KB8 IRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI                 
         : :: :   ..  :. :                                         
CCDS41 GNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEEYFCVKRIFSGGDQSFSHYSSPQ
            330       340       350       360       370       380  

>>CCDS54777.1 HERC6 gene_id:55008|Hs108|chr4              (986 aa)
 initn: 296 init1: 211 opt: 397  Z-score: 453.0  bits: 94.2 E(32554): 6.6e-19
Smith-Waterman score: 397; 31.7% identity (57.2% similar) in 290 aa overlap (176-460:25-301)

         150       160       170       180       190       200     
pF1KB8 RSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQ
                                     .::.. :. :::.:   . :.: :.:: ::
CCDS54       MYFCWGADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQ
                     10        20        30        40        50    

         210       220       230        240       250       260    
pF1KB8 CGRKVVENEIYSESHRVHGMQDFDGQVVQ-VACGQDHSLFLTDKGEVYSCGWGADGQTGL
        ::. ..     :      .: ..  .:. :.::..::: .  ::.:.. : :..:: :.
CCDS54 LGRRGAQRGELPEP-----IQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGI
           60             70        80        90       100         

           270       280       290       300       310       320   
pF1KB8 GHYN-ITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGWGNSEYLQLASVTD-ST
       :... :. .: :.   :  ...:::.      ::.: :. .:.::.. . ::.   .  .
CCDS54 GEFKEISFTPKKIM-TLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPS
     110       120        130       140       150       160        

            330       340       350       360       370        380 
pF1KB8 QVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILGKGPNLVESAVP-EMIP
       :..  :   . :.  . :.: ::.   .:.  :  : :: .  :.   :    :: .   
CCDS54 QASPQRVRSLEGI-PLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLA-LSGRNVPVQSNK
      170       180        190       200       210        220      

             390       400       410       420       430       440 
pF1KB8 PTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVT
       :   :  .   .. :  : :: .: :.::. :..:..: :  : :: .   ..  :  : 
CCDS54 PLSVGALK---NLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGPQLVE
        230          240       250       260       270       280   

              450       460                                        
pF1KB8 -MPGEPVDVACGVDHMVTLAKSFI                                    
        . :   .. ::  :  :::                                        
CCDS54 RIDGLVSQIDCGSYH--TLAYVHTTGQVVSFGHGPSDTSKPTHPEALTENFDISCLISAE
           290         300       310       320       330       340 

>>CCDS47098.1 HERC6 gene_id:55008|Hs108|chr4              (1022 aa)
 initn: 296 init1: 211 opt: 397  Z-score: 452.7  bits: 94.2 E(32554): 6.7e-19
Smith-Waterman score: 397; 31.7% identity (57.2% similar) in 290 aa overlap (176-460:25-301)

         150       160       170       180       190       200     
pF1KB8 RSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQ
                                     .::.. :. :::.:   . :.: :.:: ::
CCDS47       MYFCWGADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQ
                     10        20        30        40        50    

         210       220       230        240       250       260    
pF1KB8 CGRKVVENEIYSESHRVHGMQDFDGQVVQ-VACGQDHSLFLTDKGEVYSCGWGADGQTGL
        ::. ..     :      .: ..  .:. :.::..::: .  ::.:.. : :..:: :.
CCDS47 LGRRGAQRGELPEP-----IQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGI
           60             70        80        90       100         

           270       280       290       300       310       320   
pF1KB8 GHYN-ITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGWGNSEYLQLASVTD-ST
       :... :. .: :.   :  ...:::.      ::.: :. .:.::.. . ::.   .  .
CCDS47 GEFKEISFTPKKIM-TLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPS
     110       120        130       140       150       160        

            330       340       350       360       370        380 
pF1KB8 QVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILGKGPNLVESAVP-EMIP
       :..  :   . :.  . :.: ::.   .:.  :  : :: .  :.   :    :: .   
CCDS47 QASPQRVRSLEGI-PLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLA-LSGRNVPVQSNK
      170       180        190       200       210        220      

             390       400       410       420       430       440 
pF1KB8 PTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVT
       :   :  .   .. :  : :: .: :.::. :..:..: :  : :: .   ..  :  : 
CCDS47 PLSVGALK---NLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGPQLVE
        230          240       250       260       270       280   

              450       460                                        
pF1KB8 -MPGEPVDVACGVDHMVTLAKSFI                                    
        . :   .. ::  :  :::                                        
CCDS47 RIDGLVSQIDCGSYH--TLAYVHTTGQVVSFGHGPSDTSKPTHPEALTENFDISCLISAE
           290         300       310       320       330       340 




464 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:24:53 2016 done: Fri Nov  4 14:24:53 2016
 Total Scan time:  2.830 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com