FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8661, 420 aa
  1>>>pF1KB8661 420 - 420 aa - 420 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3376+/-0.000435; mu= -1.0773+/- 0.028
 mean_var=485.1499+/-102.050, 0's: 0 Z-trim(123.7): 2  B-trim: 814 in 1/60
 Lambda= 0.058229
 statistics sampled from 43965 (43978) to 43965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.516), width:  16
 Scan time:  9.410

The best scores are:                                      opt bits E(85289)
NP_060517 (OMIM: 612430) pre-mRNA-splicing factor  ( 420) 2975 264.0 5.1e-70


>>NP_060517 (OMIM: 612430) pre-mRNA-splicing factor RBM2  (420 aa)
 initn: 2975 init1: 2975 opt: 2975  Z-score: 1378.0  bits: 264.0 E(85289): 5.1e-70
Smith-Waterman score: 2975; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420)

               10        20        30        40        50        60
pF1KB8 MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 MEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 VNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGAHAGKHSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGAHAGKHSSP
              370       380       390       400       410       420




420 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:18:22 2016 done: Fri Nov  4 14:18:24 2016
 Total Scan time:  9.410 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]