GENSCAN 1.0	Date run:  4-Nov-116	Time: 14:18:03

Sequence gi568815581r:36065998_36253956 : 187959 bp : 45.27% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4450   4561  112  2  1  108  103    76 0.973  10.54
 1.02 Term +   4954   5044   91  1  1  128   55   146 0.999  12.49
 1.03 PlyA +   6012   6017    6                               1.05

 2.05 PlyA -   8251   8246    6                               1.05
 2.04 Term -  22765  22675   91  0  1  128   55   104 0.999   8.29
 2.03 Intr -  23300  23186  115  0  1  135  103   127 0.999  18.41
 2.02 Intr -  24182  23989  194  1  2   75   94   104 0.793   8.84
 2.01 Init -  32478  32234  245  0  2   86   55   123 0.588   6.01
 2.00 Prom -  36787  36748   40                              -0.16

 3.00 Prom +  37344  37383   40                              -5.46
 3.01 Init +  37909  37984   76  0  1   68  108    85 0.987   7.77
 3.02 Intr +  39228  39287   60  1  0  110   45    46 0.041   1.21
 3.03 Intr +  46280  46368   89  0  2   69   39    46 0.037  -2.51
 3.04 Intr +  47357  47512  156  1  0   75   77    60 0.142   3.81
 3.05 Intr +  51728  51781   54  1  0  108   72    30 0.233   2.58
 3.06 Intr +  52995  53070   76  2  1   22  113    55 0.371   0.49
 3.07 Intr +  53291  53348   58  0  1  109  101    42 0.399   5.54
 3.08 Term +  55184  55298  115  2  1   53   44    78 0.248  -2.06
 3.09 PlyA +  56689  56694    6                               1.05

 4.00 Prom +  57586  57625   40                              -1.56
 4.01 Init +  63487  63598  112  0  1   68   72    69 0.537   3.67
 4.02 Intr +  81583  81698  116  2  2   68  109    20 0.083   2.27
 4.03 Intr +  83583  83714  132  2  0   91   72    21 0.021   1.64
 4.04 Intr +  90954  91004   51  2  0   62   79    51 0.049   0.70
 4.05 Term +  95616  95747  132  2  0  105   43   104 0.247   5.69
 4.06 PlyA +  96686  96691    6                               1.05

 5.14 PlyA -  96962  96957    6                               1.05
 5.13 Term -  98638  98481  158  2  2   95   39   129 0.728   6.80
 5.12 Intr - 100566 100354  213  1  0  101   49    71 0.634   3.19
 5.11 Intr - 101699 101547  153  0  0   85   80    82 0.818   7.14
 5.10 Intr - 102169 102070  100  1  1   91   89    78 0.700   7.88
 5.09 Intr - 103578 103526   53  1  2  100   38    77 0.764   2.53
 5.08 Intr - 104014 103894  121  1  1   92  110   146 0.994  17.27
 5.07 Intr - 104606 104558   49  1  1   97  117    62 0.988   8.68
 5.06 Intr - 105967 105858  110  1  2   92   82   150 0.999  13.88
 5.05 Intr - 106404 106297  108  0  0  107  101   162 0.994  19.88
 5.04 Intr - 106928 106848   81  2  0   52   92    42 0.599   0.83
 5.03 Intr - 107450 107411   40  1  1   80  116   -10 0.935  -0.77
 5.02 Intr - 108819 108734   86  0  2   81   79   118 0.921   8.82
 5.01 Init - 109053 108982   72  0  0   71   82    50 0.673   3.77
 5.00 Prom - 109646 109607   40                             -14.47

 6.00 Prom + 109872 109911   40                             -14.86
 6.01 Init + 110317 110368   52  0  1  123  105    85 0.997  15.02
 6.02 Intr + 112733 112765   33  0  0   80   82    35 0.546   0.29
 6.03 Intr + 113454 113592  139  1  1   70   59   125 0.809   7.32
 6.04 Intr + 116457 116581  125  0  2   94   84    22 0.735   2.63
 6.05 Intr + 116635 116979  345  2  0   29   59   283 0.436  14.86
 6.06 Term + 121158 121261  104  1  2   54   42    75 0.212  -2.06
 6.07 PlyA + 122634 122639    6                               1.05

 7.04 PlyA - 128020 128015    6                               1.05
 7.03 Term - 129379 129289   91  0  1  128   55    78 0.976   5.69
 7.02 Intr - 129915 129801  115  1  1  126  103   111 0.999  15.91
 7.01 Init - 130676 130601   76  2  1   82   94   103 0.940   9.66
 7.00 Prom - 144009 143970   40                              -0.66

 8.00 Prom + 144579 144618   40                              -7.66
 8.01 Init + 145145 145220   76  1  1   68  108    73 0.943   6.59
 8.02 Intr + 153766 153942  177  2  0   51   58    85 0.166   1.69
 8.03 Intr + 154283 154545  263  0  2   69   77   138 0.359   8.01
 8.04 Intr + 175702 175791   90  0  0  110    0    65 0.075   0.09
 8.05 Term + 183576 183707  132  2  0  105   43   163 0.853  11.59
 8.06 PlyA + 184646 184651    6                               1.05

 9.02 PlyA - 184922 184917    6                               1.05
 9.01 Term - 186597 186440  158  1  2   95   39    96 0.601   3.50

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  38531  38645  115  0  1   82   59    48 0.873   0.81
S.002 Term +  39228  39315   88  0  1  110   49    89 0.876   4.33


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:36065998_36253956|GENSCAN_predicted_peptide_1|67_aa
XGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKPGVILLTKRGRQICADPNKKWVQKYI
SDLKLNA

>gi568815581r:36065998_36253956|GENSCAN_predicted_CDS_1|204_bp
nttggtaccaacaaagagctctgctgcctcgtctatacctcctggcagattccacaaaag
ttcatagttgactattctgaaaccagcccccagtgccccaagccaggtgtcatcctccta
accaagagaggccggcagatctgtgctgaccccaataagaagtgggtccagaaatacatc
agcgacctgaagctgaatgcctga

>gi568815581r:36065998_36253956|GENSCAN_predicted_peptide_2|214_aa
MVSKSLWRKWEQKLDCELKKQIHNYPECRILQDEICRTMSWLEQLISDCHTLTTELASPT
LLTMEMDLRRLPQPALACERQRAAYKEESWFQTSEGHGQQTVVSPFLALLTLEPTFRHLL
RIMQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA

>gi568815581r:36065998_36253956|GENSCAN_predicted_CDS_2|645_bp
atggtgtccaagtcactttggaggaaatgggagcagaagctggattgtgaattgaagaaa
caaatacacaattatccagagtgcagaattcttcaggatgaaatctgtaggacaatgagc
tggttggagcagctcatcagtgactgtcacactctgactacggagctggccagccccacg
cttcttaccatggaaatggaccttcgtcgcctgccacaacctgctcttgcttgtgaaagg
cagagggctgcctataaagaggagagctggtttcagacttcagaaggacacgggcagcag
acagtggtcagtcctttcttggctctgctgacactcgagcccacattccgtcacctgctc
agaatcatgcaggtctccactgctgcccttgctgtcctcctctgcaccatggctctctgc
aaccagttctctgcatcacttgctgctgacacgccgaccgcctgctgcttcagctacacc
tcccggcagattccacagaatttcatagctgactactttgagacgagcagccagtgctcc
aagcccggtgtcatcttcctaaccaagcgaagccggcaggtctgtgctgaccccagtgag
gagtgggtccagaaatatgtcagcgacctggagctgagtgcctga

>gi568815581r:36065998_36253956|GENSCAN_predicted_peptide_3|227_aa
MKLCVTVLSLLMLVAAFCSPALSAPNSKPKEASKSVLIPVNPGSRKRAEIVEKQTQAFIM
QVADLQQKGHAQPHQGYINSPVLCHNLIQRDLEHFLLLQDITLVHYNDDIMMTRSSEQEV
ANTLDLLAVSMDDDDCWQNRGVVVKNSSPQAQATDWYWSMTCYEPSHTAEDGTIKLQENK
LRAPTDSTLCTMYNSKDMEPTQIAINDRRDKENVAYKHPGILRSHKK

>gi568815581r:36065998_36253956|GENSCAN_predicted_CDS_3|684_bp
atgaagctctgcgtgactgtcctgtctctcctcatgctagtagctgccttctgctctcca
gcgctctcagcaccaaattccaaaccaaaagaagcaagcaagtctgtgctgatcccagtg
aatcctgggtccaggaaaagagctgaaattgtagaaaaacagacacaagcttttatcatg
caagtggctgacctgcaacaaaaggggcatgcacagcctcaccaggggtatatcaactct
ccggttttgtgtcataatcttattcagagagaccttgaacactttttgcttctgcaagat
atcacactggtccattacaatgatgacattatgatgactagatccagtgaacaagaagta
gcaaacacactggacttattggcagtgagcatggatgatgatgattgctggcaaaacagg
ggagtggtagtgaagaacagcagtccccaggcccaggccacagattggtactggtccatg
acctgttacgaaccgagccacacagcagaagatgggaccatcaagttgcaggaaaacaag
ctcagggctcccactgattctacattatgcactatgtacaatagcaaagacatggaacca
acccaaattgccatcaacgatagaagggataaagaaaatgtggcatataaacaccctgga
atactacgcagccataaaaaatga

>gi568815581r:36065998_36253956|GENSCAN_predicted_peptide_4|180_aa
MEEVRVSWIEDQTSHNIPLSQNLIKALPVFNSVKAERSICVHQCRKDGDYKEGKCCIRKG
CWHIFVPPPQNLIPKQTHAFLLSAKSELEKTNSVPVGFPIFGWLAGLPPQPLSRLLSRSW
ASVCISEEKTGTVEGKTAVCEMFHVRGKQHIQIPKLSTSSVTRHLHHFRLMQDSQPLDLS

>gi568815581r:36065998_36253956|GENSCAN_predicted_CDS_4|543_bp
atggaggaagttcgagtgtcctggatagaagatcaaaccagccacaacattcccttaagc
caaaacctaatcaaagccctacctgtcttcaactctgtcaaggctgagagaagcatctgt
gtgcaccaatgcagaaaagacggggactacaaggaaggaaaatgttgcatcaggaagggc
tgctggcacatctttgttccccctccccaaaacctcatccccaagcagacccatgcgttc
ctgctctctgccaagtccgaactggagaaaacaaattctgtcccagtggggtttcccatc
tttggctggctggctggacttcctccacaaccactctctcgccttctaagcaggagctgg
gcttctgtgtgcatcagtgaagagaagacggggactgtggaagggaaaacagcagtctgt
gagatgtttcatgtccgaggcaaacagcacattcagatccccaagctctccacctccagt
gtgaccaggcacctgcaccacttcaggctcatgcaggactcacagcctttggacctcagc
taa

>gi568815581r:36065998_36253956|GENSCAN_predicted_peptide_5|447_aa
MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL
TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEM
KLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEY
NPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQAARAPAAIGAHEWADQAQ
ISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE
DTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPAR
FPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQACRKAGVNAIVNARRRNLTVRPGFS
RVARLLGDGCDPEDRAQASVMPGWNEL

>gi568815581r:36065998_36253956|GENSCAN_predicted_CDS_5|1344_bp
atggacgtggtagaggtcgcgggtagttggtgggcacaagagcgagaggacatcattatg
aaatacgaaaagggacaccgagctgggctgccagaggacaaggggcctaagccttttcga
agctacaacaacaacgtcgatcatttggggattgtacatgagacggagctgcctcctctg
actgcgcgggaggcgaagcaaattcggcgggagatcagccgaaagagcaagtgggtggat
atgctgggagactgggagaaatacaaaagcagcagaaagctcatagatcgagcgtacaag
ggaatgcccatgaacatccggggcccgatgtggtcagtcctcctgaacattgaggaaatg
aagttgaaaaaccccggaagataccagatcatgaaggagaagggcaagaggtcatctgag
cacatccagcgcatcgaccgggacataagcgggacattaaggaagcatatgttcttcagg
gatcgatacggaaccaagcagcgggaactactccacatcctcctggcatatgaggagtat
aacccggaggtgggctactgcagggacctgagccacatcgccgccttgttcctcctctat
cttcctgaggaggatgcattctgggcactggtgcagctgctggccagtgagaggcactcc
ctgcaggctgcccgggctcctgctgccatcggtgcccacgaatgggccgaccaagcccag
atctctctcgggctcaccctgcgcctgtgggacgtgtatctggtagaaggcgaacaggcg
ttgatgccgataacaagaatcgcctttaaggttcagcagaagcgcctcacgaagacgtcc
aggtgtggcccgtgggcacgtttttgcaaccggttcgttgatacctgggccagggatgag
gacactgtgctcaagcatcttagggcctctatgaagaaactaacaagaaagcagggggac
ctgccacccccagccaaacccgagcaagggtcgtcggcatccaggcctgtgccggcttca
cgtggcaggaagaccctctgcaagggggacaggcaggcccctccaggcccaccagcccgg
ttcccgcggcccatttggtcagcttccccgccacgggcacctcgttcttccacaccctgt
cctggtggggctgtccgggaagacacctaccctgtgggcactcaggcgtgccgcaaagca
ggcgtcaacgccattgttaatgcacggaggaggaacctgactgttagacctgggttttcc
agggttgcacggcttctgggagacggatgtgaccctgaggacagggcacaggccagtgta
atgccaggatggaatgagctgtga

>gi568815581r:36065998_36253956|GENSCAN_predicted_peptide_6|265_aa
METKEPIVYTGSVERAPGPFGALATSSLDHTMEAGSPVGTTRASCDLQFLLPGVWGAHSG
EHGTPHTPHFEDAGRCERVDASTTCLHMCVCTCIVLAHLRVSRESGAQHVLAPAGTLSRR
RGWGPYLRSLRIQHRSSPVQPPAKPPEDEPDAEGYEWTIAVSFQLADFAPLHWLRLDGPG
FGVLSVPPHRVVAFSLGITPSRGAADPKSSMSSPRPAHRPRPRPLPRPDQRALEQCPLEK
AERSHPPCTRAAKNSHVPEYVSAAV

>gi568815581r:36065998_36253956|GENSCAN_predicted_CDS_6|798_bp
atggagacgaaagagccaatcgtctacacgggcagtgtagaacgggcgcctgggcctttt
ggagccctggccacgtcctccctggatcacacgatggaagctggcagccccgtgggcacc
actcgagccagctgtgacctgcagtttctgcttcctggagtgtggggcgcccactcagga
gagcacggcacaccccacacccctcattttgaggatgctgggaggtgtgagcgagtggat
gcttccactacgtgtctgcacatgtgtgtgtgcacttgcattgtccttgcacacctgcgt
gtgtcccgtgagagcggagcccagcatgtgctggcacctgcaggaacattgtcacgacga
cgaggatggggaccatatcttcggagcctgaggatccaacacaggtccagccctgtgcag
ccgcccgccaagccgccagaggacgagccggacgccgaaggctacgagtggacgattgca
gttagtttccaactcgccgacttcgcgcccctccactggctccggcttgatggtcccggc
ttcggggtgctctcggtccctccccatcgcgtcgtcgctttctcccttggcataaccccc
agccgcggggccgcagaccctaagagctccatgagctctccgcgccctgcccaccggccc
cggccccgacccctccccagaccggaccagagagctttggaacaatgtcctctagaaaaa
gctgaacgtagccacccaccttgtacgagagccgcaaagaatagccatgtgcctgaatat
gtgtcagccgctgtgtga

>gi568815581r:36065998_36253956|GENSCAN_predicted_peptide_7|93_aa
MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA

>gi568815581r:36065998_36253956|GENSCAN_predicted_CDS_7|282_bp
atgcaggtctccactgctgcccttgccgtcctcctctgcaccatggctctctgcaaccag
gtcctctctgcaccacttgctgctgacacgccgaccgcctgctgcttcagctacacctcc
cgacagattccacagaatttcatagctgactactttgagacgagcagccagtgctccaag
cccagtgtcatcttcctaaccaagagaggccggcaggtctgtgctgaccccagtgaggag
tgggtccagaaatacgtcagtgacctggagctgagtgcctga

>gi568815581r:36065998_36253956|GENSCAN_predicted_peptide_8|245_aa
MKLCVTVLSLLVLVAAFCSLALSAPIKLGAYGGQVINGVLAQVQLTVGPVGPWIHPVVIS
PMTECVIGIDIFNSWQNPYIGSLTGIDLANAFFSIPVHKAHQKQFAFSWQGQQYTFTVLP
HGYINSPALRHNLIQRDLDHFLLLKDITLVHYNDIMMIGSSEQKVANTLDLLVETELKLI
CGDVLDVLDKHLIPAATTGKSKAVCEMFDVRGKQHIQIPKLYTSSVTRHLHHFRLMQDSQ
PLDRS

>gi568815581r:36065998_36253956|GENSCAN_predicted_CDS_8|738_bp
atgaagctctgcgtgactgtcctgtctctcctcgtgctagtagctgccttctgctctcta
gcactctcagcaccaattaaattaggggcttatggaggtcaggtaattaatggagtttta
gctcaggtccaacttacagtgggcccagtgggtccctggattcatcctgtggtcatttcc
ccaatgacagaatgtgtaattggcatagatatattcaacagctggcagaacccctacatt
ggctccctgactggtattgacttagcaaatgcctttttctccattcctgtccataaggcc
caccagaagcaatttgccttcagctggcaaggtcagcaatatacctttactgtcctacct
cacgggtatatcaactctccagctttgcgtcataatcttattcagagagaccttgatcac
tttttgcttctgaaagatatcacactggtccattacaatgacattatgatgattggatcc
agtgagcaaaaagtagcaaacacactggacttattggttgagactgagctaaagttaatc
tgtggcgacgttctggatgtactggacaaacacctcattccagcagctacaactggcaag
tccaaggcagtctgtgagatgtttgatgtccgaggcaaacagcacattcagatccccaag
ctctacacctccagtgtgaccaggcacctgcaccacttcaggctcatgcaggactcacag
cctttggaccgcagctaa

>gi568815581r:36065998_36253956|GENSCAN_predicted_peptide_9|52_aa
XCRKAGVNSIVNARRRNLTVRPGFSRVARLLGDGCDPEDRAQASVMPGWNEL

>gi568815581r:36065998_36253956|GENSCAN_predicted_CDS_9|159_bp
ncgtgccgcaaagcaggcgtcaactccattgttaatgcacggaggaggaacctgactgtt
agacctgggttttccagggttgcacggcttctgggagacggatgtgaccctgaggacagg
gcacaggccagtgtaatgccaggatggaatgagctgtga