GENSCAN 1.0	Date run:  4-Nov-116	Time: 14:17:57

Sequence gi568815581f:36225412_36434441 : 209030 bp : 45.81% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  13772  13774    3  1  0  113   81     0 0.703   1.80
 1.02 Intr +  16288  16377   90  0  0  110    0    65 0.075   0.09
 1.03 Term +  24162  24293  132  2  0  105   43   163 0.842  11.59
 1.04 PlyA +  25232  25237    6                               1.05

 2.14 PlyA -  25508  25503    6                               1.05
 2.13 Term -  27183  27026  158  1  2   95   39    96 0.006   3.50
 2.12 Intr -  29111  28899  213  0  0  101   49    81 0.005   4.19
 2.11 Intr -  30226  30074  153  2  0   85   80    82 0.020   7.14
 2.10 Intr -  30696  30597  100  0  1   91   89    78 0.022   7.88
 2.09 Intr -  32102  32050   53  0  2  100   38    72 0.016   2.03
 2.08 Intr -  32538  32418  121  0  1   92  110   146 0.994  17.27
 2.07 Intr -  33130  33082   49  0  1   97  117    62 0.987   8.68
 2.06 Intr -  34488  34379  110  0  2  102   82   146 0.996  14.48
 2.05 Intr -  34925  34818  108  2  0   99  101   160 0.975  18.88
 2.04 Intr -  35449  35369   81  1  0   52   92    42 0.602   0.83
 2.03 Intr -  35971  35932   40  0  1   80  116   -10 0.939  -0.77
 2.02 Intr -  37340  37255   86  2  2   81   79   118 0.923   8.82
 2.01 Init -  37574  37503   72  2  0   71   82    55 0.663   4.27
 2.00 Prom -  43250  43211   40                              -3.26

 3.00 Prom +  43539  43578   40                              -6.96
 3.01 Init +  47328  47330    3  2  0   71  101     0 0.685  -0.40
 3.02 Intr +  48788  48872   85  1  1  131  116    54 0.961  11.89
 3.03 Intr +  71898  71975   78  1  0   88  110    55 0.971   7.22
 3.04 Intr +  81886  82007  122  2  2   80   64    50 0.736   2.01
 3.05 Intr +  88026  88226  201  2  0   92   84   171 0.941  16.58
 3.06 Intr +  94545  94649  105  2  0   73   93   108 0.803  10.21
 3.07 Intr + 100235 100320   86  1  2   81   79   118 0.909   8.82
 3.08 Intr + 101604 101643   40  0  1   80  116   -10 0.919  -0.77
 3.09 Intr + 102126 102206   81  2  0   52   92    42 0.589   0.83
 3.10 Intr + 102650 102757  108  1  0  102  101   162 0.993  19.38
 3.11 Intr + 103087 103196  110  0  2  102   82   150 0.999  14.88
 3.12 Intr + 104445 104493   49  0  1   97  117    62 0.988   8.68
 3.13 Intr + 105037 105157  121  0  1   92  110   146 0.994  17.27
 3.14 Intr + 105473 105525   53  0  2  100   38    77 0.355   2.53
 3.15 Intr + 106879 106978  100  0  1   91   89    78 0.429   7.88
 3.16 Intr + 107349 107501  153  1  0   85   80    82 0.436   7.14
 3.17 Intr + 108465 108677  213  1  0  101   49    81 0.305   4.19
 3.18 Term + 110393 110550  158  0  2   95   39   129 0.375   6.80
 3.19 PlyA + 113850 113855    6                               1.05

 4.00 Prom + 131813 131852   40                              -4.06
 4.01 Init + 137655 137657    3  2  0  113   81     0 0.577   1.80
 4.02 Term + 148054 148185  132  0  0  105   43   126 0.556   7.89
 4.03 PlyA + 149124 149129    6                               1.05

 5.14 PlyA - 149400 149395    6                               1.05
 5.13 Term - 151075 150918  158  2  2   95   39   129 0.048   6.80
 5.12 Intr - 153003 152791  213  1  0  101   49    81 0.041   4.19
 5.11 Intr - 154137 153985  153  1  0   85   80    82 0.058   7.14
 5.10 Intr - 154607 154508  100  2  1   91   89    78 0.062   7.88
 5.09 Intr - 156013 155961   53  2  2  100   38    77 0.048   2.53
 5.08 Intr - 156449 156329  121  2  1   92  110   146 0.994  17.27
 5.07 Intr - 157041 156993   49  2  1   97  117    62 0.988   8.68
 5.06 Intr - 158399 158290  110  2  2  102   82   150 0.999  14.88
 5.05 Intr - 158836 158729  108  1  0  102  101   153 0.993  18.48
 5.04 Intr - 159360 159280   81  0  0   52   92    42 0.605   0.83
 5.03 Intr - 159882 159843   40  2  1   80  116   -10 0.949  -0.77
 5.02 Intr - 161250 161165   86  0  2   81   79   118 0.907   8.82
 5.01 Init - 161484 161413   72  0  0   71   82    55 0.670   4.27
 5.00 Prom - 162077 162038   40                             -14.47

 6.00 Prom + 162303 162342   40                             -14.86
 6.01 Init + 162748 162799   52  0  1  123  105    85 0.998  15.02
 6.02 Intr + 165162 165194   33  1  0   80  110    35 0.887   3.09
 6.03 Intr + 165881 166019  139  0  1   70   59   112 0.801   6.02
 6.04 Intr + 169188 169256   69  0  0   87  102    28 0.275   2.40
 6.05 Intr + 193868 193883   16  2  1  138   55     2 0.052  -2.55
 6.06 Term + 199135 199266  132  0  0  105   43   126 0.747   7.89
 6.07 PlyA + 200205 200210    6                               1.05

 7.08 PlyA - 200481 200476    6                               1.05
 7.07 Term - 202156 201999  158  2  2   95   39   133 0.212   7.20
 7.06 Intr - 204085 203873  213  2  0  101   49    85 0.181   4.59
 7.05 Intr - 205219 205067  153  2  0   85   80    86 0.204   7.54
 7.04 Intr - 205689 205590  100  0  1   91   89    78 0.222   7.88
 7.03 Intr - 207095 207043   53  0  2  100   38    77 0.140   2.53
 7.02 Intr - 207531 207411  121  0  1   92  110   146 0.994  17.27
 7.01 Intr - 208123 208075   49  0  1   97  117    85 0.984  10.98

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  32102  31945  158  0  2  100   48   123 0.977   7.60
S.002 Init +  38838  38889   52  2  1  123  105    85 0.939  15.02
S.003 Term - 156013 155856  158  2  2  100   48   128 0.937   8.10


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:36225412_36434441|GENSCAN_predicted_peptide_1|74_aa
MVETELKLICGDVLDVLDKHLIPAATTGKSKAVCEMFDVRGKQHIQIPKLYTSSVTRHLH
HFRLMQDSQPLDRS

>gi568815581f:36225412_36434441|GENSCAN_predicted_CDS_1|225_bp
atggttgagactgagctaaagttaatctgtggcgacgttctggatgtactggacaaacac
ctcattccagcagctacaactggcaagtccaaggcagtctgtgagatgtttgatgtccga
ggcaaacagcacattcagatccccaagctctacacctccagtgtgaccaggcacctgcac
cacttcaggctcatgcaggactcacagcctttggaccgcagctaa

>gi568815581f:36225412_36434441|GENSCAN_predicted_peptide_2|447_aa
MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL
TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEM
KMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEY
NPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQAAQAPAAIGAHEWADQAQ
ISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE
DTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPAR
FPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQACRKAGVNSIVNARRRNLTVRPGFS
RVARLLGDGCDPEDRAQASVMPGWNEL

>gi568815581f:36225412_36434441|GENSCAN_predicted_CDS_2|1344_bp
atggacgtggtagaggtcgcgggcagttggtgggcacaagagcgagaggacatcattatg
aaatacgaaaagggacaccgagctgggctgccagaggacaaggggcctaagccttttcga
agctacaacaacaacgtcgatcatttggggattgtacatgagacggagctgcctcctctg
actgcgcgggaggcgaagcaaattcggcgggagatcagccgaaagagcaagtgggtggat
atgctgggagactgggagaaatacaaaagcagcagaaagctcatagatcgagcgtacaag
ggaatgcccatgaacatccggggcccgatgtggtcagtcctcctgaacactgaggaaatg
aagatgaaaaaccccggaagataccagatcatgaaggagaagggcaagaggtcatctgag
cacatccagcgcatcgaccgggacgtaagcgggacattaaggaagcatatattcttcagg
gatcgatacggaaccaagcagcgggaactactccacatcctcctggcatatgaggagtat
aacccggaggtgggctactgcagggacctgagccacatcgccgccttgttcctcctctat
cttcctgaggaggatgcattctgggcactggtgcagctgctggccagtgagaggcactcc
ctgcaggctgcccaggctcctgctgccatcggtgcccacgaatgggccgaccaagcccag
atctctctcgggctcaccctgcgcctgtgggacgtgtatctggtagaaggcgaacaggcg
ttgatgccgataacaagaatcgcctttaaggttcagcagaagcgcctcacgaagacgtcc
aggtgtggcccgtgggcacgtttttgcaaccggttcgttgatacctgggccagggatgag
gacactgtgctcaagcatcttagggcctctatgaagaaactaacaagaaagcagggggac
ctgccacccccagccaaacccgagcaagggtcgtcggcatccaggcctgtgccggcttca
cgtggcgggaagaccctctgcaagggggacaggcaggcccctccaggcccaccagcccgg
ttcccgcggcccatttggtcagcttccccgccacgggcacctcgttcttccacaccctgt
cctggtggggctgtccgggaagacacctaccctgtgggcactcaggcgtgccgcaaagca
ggcgtcaactccattgttaatgcacggaggaggaacctgactgttagacctgggttttcc
agggttgcacggcttctgggagacggatgtgaccctgaggacagggcacaggccagtgta
atgccaggatggaatgagctgtga

>gi568815581f:36225412_36434441|GENSCAN_predicted_peptide_3|621_aa
MVRQATNQIVMNCADIDIITASYAPEGDEEIHATGFNYQNEDEKVTLSFPSTLQTGTGTL
KIDFVGELNDKMKGFYRSKYTTPSGEVRYAAVTQFENVIDRKPYPDDENLVEVKFARTPV
TSTYLVAFVVGEYDFVETRSKDGVCVCVYTPVGKAEQGKFALEVSVGHPSEVDEICDAIS
YSKGASVIRMLHDYIGDKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAK
QIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPG
RYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGY
CRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQAARAPAAIGAHEWADQAQISLGLT
LRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKH
LRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIW
SASPPRAPRSSTPCPGGAVREDTYPVGTQACRKAGVNAIVNARRRNLTVRPGFSRVARLL
GDGCDPEDRAQASVMPGWNEL

>gi568815581f:36225412_36434441|GENSCAN_predicted_CDS_3|1866_bp
atggtgaggcaggcgactaatcagattgtgatgaattgtgctgatattgatattattaca
gcttcatatgcaccagaaggagatgaagaaatacatgctacaggatttaactatcagaat
gaagatgaaaaagtcaccttgtctttccctagtactctgcaaacaggtacgggaacctta
aagatagattttgttggagagctgaatgacaaaatgaaaggtttctatagaagtaagtat
actaccccttctggagaggtgcgctatgctgctgtaacacagtttgagaatgtaattgac
cggaaaccataccctgatgatgaaaatttagtggaagtgaagtttgcccgcacacctgtt
acatctacatatctggtggcatttgttgtgggtgaatatgactttgtagaaacaaggtca
aaagatggtgtgtgtgtctgtgtttacactcctgttggcaaagcagaacaaggaaaattt
gcattagaggtcagtgtgggccatccatctgaggttgatgagatatgtgatgctatatca
tatagcaaaggtgcatctgtcatccgaatgctgcatgactacattggggataagggacac
cgagctgggctgccagaggacaaggggcctaagccttttcgaagctacaacaacaacgtc
gatcatttggggattgtacatgagacggagctgcctcctctgactgcgcgggaggcgaag
caaattcggcgggagatcagccgaaagagcaagtgggtggatatgctgggagactgggag
aaatacaaaagcagcagaaagctcatagatcgagcgtacaagggaatgcccatgaacatc
cggggcccgatgtggtcagtcctcctgaacattgaggaaatgaagttgaaaaaccccgga
agataccagatcatgaaggagaagggcaagaggtcatctgagcacatccagcgcatcgac
cgggacataagcgggacattaaggaagcatatgttcttcagggatcgatacggaaccaag
cagcgggaactactccacatcctcctggcatatgaggagtataacccggaggtgggctac
tgcagggacctgagccacatcgccgccttgttcctcctctatcttcctgaggaggatgca
ttctgggcactggtgcagctgctggccagtgagaggcactccctgcaggctgcccgggct
cctgctgccatcggtgcccacgaatgggccgaccaagcccagatctctctcgggctcacc
ctgcgcctgtgggacgtgtatctggtagaaggcgaacaggcgttgatgccgataacaaga
atcgcctttaaggttcagcagaagcgcctcacgaagacgtccaggtgtggcccgtgggca
cgtttttgcaaccggttcgttgatacctgggccagggatgaggacactgtgctcaagcat
cttagggcctctatgaagaaactaacaagaaagcagggggacctgccacccccagccaaa
cccgagcaagggtcgtcggcatccaggcctgtgccggcttcacgtggcgggaagaccctc
tgcaagggggacaggcaggcccctccaggcccaccagcccggttcccgcggcccatttgg
tcagcttccccgccacgggcacctcgttcttccacaccctgtcctggtggggctgtccgg
gaagacacctaccctgtgggcactcaggcgtgccgcaaagcaggcgtcaacgccattgtt
aatgcacggaggaggaacctgactgttagacctgggttttccagggttgcacggcttctg
ggagacggatgtgaccctgaggacagggcacaggccagtgtaatgccaggatggaatgag
ctgtga

>gi568815581f:36225412_36434441|GENSCAN_predicted_peptide_4|44_aa
MAVCEMFHVRGKQHIQIPKLYTSSVTRHLHHFRLMQDSQPLDLS

>gi568815581f:36225412_36434441|GENSCAN_predicted_CDS_4|135_bp
atggcagtctgtgagatgtttcatgtccgaggcaaacagcacattcagatccccaagctc
tacacctccagtgtgaccaggcacctgcaccacttcaggctcatgcaggactcacagcct
ttggacctcagctaa

>gi568815581f:36225412_36434441|GENSCAN_predicted_peptide_5|447_aa
MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL
TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEM
KLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEY
NPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQAARAPAAIGAHEWADQAQ
ISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE
DTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPAR
FPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQACRKAGVNAIVNARRRNLTVRPGFS
RVARLLGDGCDPEDRAQASVMPGWNEL

>gi568815581f:36225412_36434441|GENSCAN_predicted_CDS_5|1344_bp
atggacgtggtagaggtcgcgggcagttggtgggcacaagagcgagaggacatcattatg
aaatacgaaaagggacaccgagctgggctgccagaggacaaggggcctaagccttttcga
agctacaacaacaacgtcgatcatttggggattgtacatgagacggagctgcctcctctg
actgcgcgggaggcgaagcaaattcggcgggagatcagccgaaagagcaagtgggtggat
atgctgggagactgggagaaatacaaaagcagcagaaagctcatagatcgagcgtacaag
ggaatgcccatgaacatccggggcccgatgtggtcagtcctcctgaacactgaggaaatg
aagttgaaaaaccccggaagataccagatcatgaaggagaagggcaagaggtcatctgag
cacatccagcgcatcgaccgggacataagcgggacattaaggaagcatatgttcttcagg
gatcgatacggaaccaagcagcgggaactactccacatcctcctggcatatgaggagtat
aacccggaggtgggctactgcagggacctgagccacatcgccgccttgttcctcctctat
cttcctgaggaggatgcattctgggcactggtgcagctgctggccagtgagaggcactcc
ctgcaggctgcccgggctcctgctgccatcggtgcccacgaatgggccgaccaagcccag
atctctctcgggctcaccctgcgcctgtgggacgtgtatctggtagaaggcgaacaggcg
ttgatgccgataacaagaatcgcctttaaggttcagcagaagcgcctcacgaagacgtcc
aggtgtggcccgtgggcacgtttttgcaaccggttcgttgatacctgggccagggatgag
gacactgtgctcaagcatcttagggcctctatgaagaaactaacaagaaagcagggggac
ctgccacccccagccaaacccgagcaagggtcgtcggcatccaggcctgtgccggcttca
cgtggcgggaagaccctctgcaagggggacaggcaggcccctccaggcccaccagcccgg
ttcccgcggcccatttggtcagcttccccgccacgggcacctcgttcttccacaccctgt
cctggtggggctgtccgggaagacacctaccctgtgggcactcaggcgtgccgcaaagca
ggcgtcaacgccattgttaatgcacggaggaggaacctgactgttagacctgggttttcc
agggttgcacggcttctgggagacggatgtgaccctgaggacagggcacaggccagtgta
atgccaggatggaatgagctgtga

>gi568815581f:36225412_36434441|GENSCAN_predicted_peptide_6|146_aa
METKEPIVYTGSVERAPGPFGALATSSPDHTMEAGSPVGTTRASCDLQFLLPGVWGAHSG
EQGIPHTPHFEDAGRGWNICPEKANTSIGHVSLSPFATPLVMYAVCEMFHVRGKQHIQIP
KLYTSSVTRHLHHFRLMQDSQPLDLS

>gi568815581f:36225412_36434441|GENSCAN_predicted_CDS_6|441_bp
atggagacgaaagagccaatcgtctacacgggcagtgtagaacgggcgcctgggcctttt
ggagccctggccacgtcctccccagatcacacgatggaagctggcagccccgtgggcacc
actcgagccagctgtgacctgcagtttctgcttcctggagtgtggggcgcccactcagga
gagcagggcataccccacacccctcattttgaggatgctgggaggggatggaatatttgt
cctgagaaggccaatacatccatcggacacgtgtctctatccccatttgctacgcctttg
gttatgtatgcagtctgtgagatgtttcatgtccgaggcaaacagcacattcagatcccc
aagctctacacctccagtgtgaccaggcacctgcaccacttcaggctcatgcaggactca
cagcctttggacctcagctaa

>gi568815581f:36225412_36434441|GENSCAN_predicted_peptide_7|282_aa
XQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQAAR
APAAIGAHEWADQAQISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPW
ARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDVPPPAKPEQGSSASRPVPASRGGKT
LCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQACRKAGVNAI
VNARRRNLTVRPGFSRVARLLGDGCDPEDRAQASVMPGWDEL

>gi568815581f:36225412_36434441|GENSCAN_predicted_CDS_7|849_bp
nngcagcgggaactactccacatcctcctggcatatgaggagtacaacccggaggtgggc
tactgcagggacctgagccacatcgccgccttgttcctcctctatcttcctgaggaggat
gcattctgggcactggtgcagctgctggccagtgagaggcactccctgcaggctgcccgg
gctcctgctgccatcggtgcccacgaatgggccgaccaagcccagatctctctcgggctc
accctgcgcctgtgggacgtgtatctggtagaaggcgaacaggcgttgatgccgataaca
agaatcgcctttaaggttcagcagaagcgcctcacgaagacgtccaggtgtggcccgtgg
gcacgtttttgcaaccggttcgttgatacctgggccagggatgaggacactgtgctcaag
catcttagggcctctatgaagaaactaacaagaaagaagggggacgtgccacccccagcc
aaacccgagcaagggtcgtcggcatccaggcctgtgccggcttcacgtggcgggaagacc
ctctgcaagggggacagacaggcccctccaggcccaccagcccggttcccgcggcccatt
tggtcagcttccccgccacgggcacctcgttcttccacaccctgtcctggtggggctgtc
cgggaagacacctaccctgtgggcactcaggcgtgccgcaaagcaggcgtcaacgccatt
gttaatgcacggaggaggaacctgactgttagacctgggttttccagggttgcacggctt
ctgggagacggatgtgaccctgaggacagggcacaggccagtgtaatgccaggatgggat
gagctgtga