GENSCAN 1.0	Date run:  4-Nov-116	Time: 14:10:10

Sequence gi568815576f:39847107_40071081 : 223975 bp : 44.89% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +  26979  27018   40                              -3.06
 1.01 Sngl +  28158  29009  852  2  0   26   44   713 0.640  56.50
 1.02 PlyA +  29146  29151    6                               1.05

 2.00 Prom +  29731  29770   40                              -4.86
 2.01 Init +  31052  31226  175  1  1   72   39   153 0.201   8.31
 2.02 Intr +  46227  46301   75  1  0   51   53   115 0.910   3.79
 2.03 Intr +  46638  46784  147  1  0   90  115    29 0.958   6.01
 2.04 Intr +  50130  50222   93  1  0  107   34    51 0.055   1.54
 2.05 Intr +  60737  60780   44  0  2   64   86    39 0.009  -0.74
 2.06 Intr +  73544  73612   69  1  0   91   89    22 0.049   1.98
 2.07 Intr +  80743  80838   96  0  0   75   95    43 0.147   3.91
 2.08 Intr +  89477  89537   61  1  1    2  116    61 0.112  -1.39
 2.09 Intr +  99987 100078   92  1  2   73  100   101 0.211   9.51
 2.10 Intr + 108713 108804   92  1  2   86  108    68 0.979   7.39
 2.11 Intr + 112949 113068  120  2  0  116   84   123 0.668  14.31
 2.12 Term + 113123 113138   16  2  1   87   49    16 0.409  -4.69
 2.13 PlyA + 114744 114749    6                               1.05

 3.00 Prom + 117022 117061   40                              -6.96
 3.01 Init + 117269 117434  166  1  1   94   44   314 0.579  27.39
 3.02 Intr + 118796 119052  257  0  2   39   85    63 0.478  -1.74
 3.03 Intr + 120936 121166  231  2  0   81   70   190 0.694  14.47
 3.04 Intr + 122305 122427  123  0  0  106   39    54 0.885   3.08
 3.05 Term + 123799 123978  180  0  0   82   37   259 0.990  17.81
 3.06 PlyA + 126032 126037    6                               1.05

 4.00 Prom + 130132 130171   40                              -6.36
 4.01 Init + 131038 131084   47  0  2   63   61    62 0.373   1.15
 4.02 Term + 137069 137189  121  2  1  139   44   122 0.997  10.85
 4.03 PlyA + 144217 144222    6                               1.05

 5.00 Prom + 145889 145928   40                              -7.86
 5.01 Init + 147120 147187   68  2  2   68   81    14 0.354  -0.75
 5.02 Intr + 147407 147611  205  2  1   83   44   113 0.421   5.60
 5.03 Intr + 147871 148425  555  0  0   53  102  1029 0.765  93.84
 5.04 Intr + 172062 172229  168  2  0   92  114   269 0.982  30.04
 5.05 Intr + 172781 172902  122  1  2   83  109   116 0.999  12.49
 5.06 Intr + 174184 174857  674  1  2   88   99   811 0.896  73.52
 5.07 Intr + 175568 175710  143  0  2   84   80    46 0.838   3.47
 5.08 Intr + 176674 176791  118  0  1  -12  107    73 0.163  -0.76
 5.09 Intr + 180970 181102  133  2  1   44   49    79 0.073  -0.70
 5.10 Intr + 181768 181952  185  1  2   73   41   139 0.473   7.13
 5.11 Intr + 182273 182409  137  0  2   61   98     7 0.444  -0.71
 5.12 Intr + 189641 189700   60  1  0   62   81    81 0.458   3.73
 5.13 Intr + 197730 197892  163  2  1   43  101   102 0.482   6.55
 5.14 Intr + 223870 223935   66  2  0   48   82    76 0.000   1.88

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  50130  50239  110  1  2  107   37    74 0.837   2.87


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576f:39847107_40071081|GENSCAN_predicted_peptide_1|283_aa
MQQIYTVKEIRSVAARSGPFAPVLSATSRGVAGALRPLVQATVPATPEQPVLDLKRPFLS
RESLSGQAVRRPLVASVGLNVPASVCYSHTDVKVPDFSEYRRLEVLDSTKSSRESTEARK
GFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRG
KPLFVRHRTQKEIKQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF
GGYYCPCHGSHYDASGRIRLGPATLNLEVPTYEFTSDDMVIVG

>gi568815576f:39847107_40071081|GENSCAN_predicted_CDS_1|852_bp
atgcaacaaatctatacagttaaagaaattcggtcggtcgcagcccgctcgggcccgttc
gcgcccgtcctgtcggccacgtcccgcggggtggcgggcgcgctgcggcccttggtgcag
gccacggtgcccgccaccccggagcagcctgtgttggacctgaagcggcccttcctcagc
cgggagtcgctgagcggccaggccgtgcgccggcctttggtcgcctccgtgggcctcaat
gtccctgcttctgtttgttattcccacacagacgtcaaggtgcctgacttctctgaatac
cgccgccttgaagttttagatagtacgaagtcttcaagagaaagcaccgaggctaggaaa
ggtttctcctatttggtaactggagtaactactgtgggtgtcgcatatgctgccaagaat
gccgtcacccagttcgtttccagcatgagtgcttctgctgatgtgttggccctggcgaaa
atcgaaatcaagttatccgatattccagaaggcaagaacatggctttcaaatggagaggc
aaacccctgtttgtacgtcatagaacccagaaggaaattaagcaggaagctgcagttgaa
ttatcacagttgagggacccacagcatgatctagatcgagtaaagaaacctgaatgggtt
atcctgataggtgtttgcactcatcttggttgtgtacccattgcaaatgcaggagatttt
ggtggttattactgcccttgccatgggtcacactatgatgcatctggcaggatcagattg
ggtcctgctactctcaaccttgaagtccccacgtatgagttcaccagtgacgatatggtg
attgttggttag

>gi568815576f:39847107_40071081|GENSCAN_predicted_peptide_2|359_aa
MKNAFGRLSGRLDTAEERIFELEDISIETTKTEKQREKPNDNNNNKNRISKNYGTTIKGP
FLGILVFIHTTPTSDDDCVPDEPGYSTYSSQAQGPRPVPTSASSLSGLVQFLSGRQARWL
QIPELEGTKGNEGSQAMNLGVTLTPVFVSYSSHDIHELTFEIQEWEKQGLESFRDLLKRQ
AKQACLGKNNREEDADSPTPRFVFTAANCSQACLPGFDKNYFLTGTMDTTSGDEKEKNLE
KAEYIVGKVDEGKASRYSMEAVAKFDFTASGEDELSFHTGDVLKILSNQEEWFKAELGSQ
EGYVPKNFIDIQFPKWFHEGLSRHQAENLLMGKEVGFFIIRASQSSPGDFSISVRMLKP

>gi568815576f:39847107_40071081|GENSCAN_predicted_CDS_2|1080_bp
atgaagaatgcctttggcaggctttctgggagactggacacagctgaggaaagaatcttt
gagctggaggacatctcaatagaaaccactaaaactgaaaagcaaagagaaaaaccgaat
gacaacaacaataacaagaacagaatatccaagaactatgggacaactataaaagggcct
ttcctcggcatcctcgtcttcattcatacaacccccacttcagatgacgactgtgtacca
gatgagccaggatattccacctactccagccaggctcaagggcccaggccggtccccact
tccgcttcctcactttctggcctggtgcagttcctgtcagggcgtcaagcaagatggttg
cagatacctgagctggagggtaccaaggggaatgaaggttctcaggccatgaacctggga
gtcaccttaactcctgtgtttgtctcttatagctctcatgatatccatgagcttaccttt
gaaatacaagagtgggaaaagcaaggcttggagagtttccgggacttgctcaagaggcag
gctaaacaagcttgccttggaaaaaataacagggaagaagatgctgactctccaaccccc
agatttgtcttcacagctgcaaattgctctcaggcctgccttcctggatttgacaaaaac
tattttcttactggtactatggataccacaagtggagatgagaaagaaaagaacttggaa
aaagcagaatatattgtggggaaagttgatgaagggaaagcttcacgttacagcatggaa
gctgttgccaagtttgatttcactgcttcaggtgaggatgaactgagctttcacactgga
gatgttttgaagattttaagtaaccaagaggagtggtttaaggcggagcttgggagccag
gaaggatatgtgcccaagaatttcatagacatccagtttcccaaatggtttcacgaaggc
ctctctcgacaccaggcagagaacttactcatgggcaaggaggttggcttcttcatcatc
cgggccagccagagctccccaggggacttctccatctctgtcagaatgctgaagccatga

>gi568815576f:39847107_40071081|GENSCAN_predicted_peptide_3|318_aa
MSSHEGGKKKALKQPKKQAKEMDEEEKAFKQKQKEEQKKLEVLKAKVVGKGPLATENSTI
PDVSSLEVVTLSPCNIQFCFALISRHEDDVQHFKVMRDNKGNYFLWTEKFPSLNKLVDYY
RTNSISRQKQIFLRDRTREDQGHRGNSLDRRSQGGPHLSGAVGEEIRPSMNRKLSDHPPT
LPLQQHQHQPQPPQYAPAPQQLQQPPQQRYLQHHHFHQERRGGSLDINDGHCGTGLGSEM
NAALMHRRHTDPVQLQAAGRVRWARALYDFEALEDDELGFHSGEVVEVLDSSNPSWWTGR
LHNKLGLFPANYVAPMTR

>gi568815576f:39847107_40071081|GENSCAN_predicted_CDS_3|957_bp
atgtccagccacgaaggtggcaagaagaaggcactgaaacagcccaagaagcaggccaag
gagatggacgaggaagagaaggctttcaagcagaaacaaaaagaggagcagaagaaactc
gaggtgctaaaagcgaaggtcgtggggaaggggcctctggccacagagaactccaccatc
ccagatgtgagcagcctggaggtggtgacattatcaccgtgtaacatacaattttgtttt
gccttgatctccaggcatgaggatgacgttcaacacttcaaggtcatgcgagacaacaag
ggtaattactttctgtggactgagaagtttccatccctaaataagctggtagactactac
aggacaaattccatctccagacagaagcagatcttccttagagacagaacccgagaagac
cagggtcaccggggcaacagcctggaccggaggtcccagggaggcccacacctcagtggg
gctgtgggagaagaaatccgaccttcgatgaaccggaagctgtcggatcaccccccgacc
cttcccctgcagcagcaccagcaccagccacagcctccgcaatatgccccagcgccccag
cagctgcagcagcccccacagcagcgatatctgcagcaccaccatttccaccaggaacgc
cgaggaggcagccttgacataaatgatgggcattgtggcaccggcttgggcagtgaaatg
aatgcggccctcatgcatcggagacacacagacccagtgcagctccaggcggcagggcga
gtgcggtgggcccgggcgctgtatgactttgaggccctggaggatgacgagctggggttc
cacagcggggaggtggtggaggtcctggatagctccaacccatcctggtggaccggccgc
ctgcacaacaagctgggcctcttccctgccaactacgtggcacccatgacccgataa

>gi568815576f:39847107_40071081|GENSCAN_predicted_peptide_4|55_aa
MGKRHGQLMEEDIDGKQCGEVEKSQALSQKHVGCSPDSATYAISLDKFLDHSELI

>gi568815576f:39847107_40071081|GENSCAN_predicted_CDS_4|168_bp
atgggcaaaagacatggacagctcatggaagaagatatagatggcaagcaatgtggagag
gtggaaaagtcacaagctttgagtcagaaacacgtgggctgcagtccagactctgctact
tacgctatcagcctggacaagtttcttgaccactctgagctgatctag

>gi568815576f:39847107_40071081|GENSCAN_predicted_peptide_5|933_aa
MSLAAYLAQTHTERHHTPYFKLSRPPHQHRTLDGEGVSSAAPEATGPEHVLRTPRARKMN
SYPRRGRRGRMAARAGQRTFTPRRSRGRSPHVRLWDLGPRRGRGQGRGRGRGAMAESQLN
CLDEAHVNEKVTEAQAAFYYCERRRAALEALLGGGEQAYRERLKEEQLRDFLSSPERQAL
RAAWSPYEDAVPAANARGKSKAKAKAPAPAPAESGESLAYWPDRSDTEVPPLDLGWTDTG
FYRGVSRVTLFTHPPKDEKAPHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAACK
RRVPVYIILDEAGVKYFLEMCQDLQLTDFRIRNIRVRSVTGVGFYMPMGRIKGTLSSRFL
MVDGDKVATGSYRFTWSSSHVDRNLLLLLTGQNVEPFDTEFRELYAISEEVDLYRQLSLA
GRVGLHYSSTVARKLINPKYALVSGCRHPPGEMMRWAARQQREAGGNPEGQEEGASGGES
AWRLESFLKDLVTVEQVLPPVEPIPLGELSQKDGRMVSHMHRDLKPKSREAPSRNGMGEA
ARGEAAPARRFSSRLFSRRAKRPAAPNGMASSVSTETSEVEFLTGKRPNENSSADISAVS
GVAFQVAGGGAFLISASLSQGTFHGGVSPSIAVEPSDENWALAGQRERGNSEGEGTDSQE
GPGMPGTIIPFLVRPLDEHRAASSAEPPQTCSAPLRKVTPSALAMEPLGRSLLPKGGGTP
LMRVQLDLCLGGLWRKELELDREGQVLALSLAGSGSCGHLSGRMRQPGRGTREKDRSLTL
QAVELHVLAGNQQLGRETVTPAPQLEMWTAHRVGTEAESTKRFTYILPRLCPLPLQVALE
RSLGELGEAHAAGSIMFLGSPCCCKAKREGVTPAPLSPPYDVASIVCGEAETARLASQRN
AAHSEPARLGGFTTNEFQKSFGFQKFLDFGIVX

>gi568815576f:39847107_40071081|GENSCAN_predicted_CDS_5|2799_bp
atgtctctggcagcctatcttgcccaaacacacacggagagacaccacacaccctacttc
aaattaagcaggcccccccaccaacaccggaccctcgacggggaaggggtcagctcggcg
gccccagaggccactgggccagaacacgtgctccggactccacgtgcgcggaaaatgaac
tcgtacccgcgacgcggccggcgggggcggatggcagcgagggccggacagcgaaccttt
accccgcggaggagtcggggccggagcccgcacgtgcggctgtgggacctcggaccgcgg
cggggccggggccagggccggggccggggccggggcgccatggccgagtcccagctgaac
tgcctggacgaggcgcacgtgaacgagaaggtgaccgaggcgcaggccgccttctactac
tgcgagcggcggcgggccgcgctggaggcgctgctgggcggcggcgagcaggcctaccgc
gagcggctcaaggaggagcagctgcgggacttcctctccagcccggagcgccaggccctg
cgggccgcctggagcccctacgaggacgccgtccccgccgccaacgcccggggcaagagc
aaggccaaggccaaggcccccgcgccggcgccggctgagtccggcgagtccctggcctac
tggcccgaccgttccgacaccgaggtgcctcctctggacctgggctggacggacactggt
ttctaccgcggcgtgagccgggtcacgctcttcacccacccgcccaaggacgagaaggcg
ccgcacctcaagcaggtggtcaggcagatgatccaacaggcccagaaggtcattgctgtg
gtcatggacctcttcactgatggtgatatctttcaagacattgtggatgctgcctgtaag
cgccgggtcccagtgtacatcatcctggacgaggcaggagtgaagtatttcctggagatg
tgtcaggacctgcagctcactgacttccggattcggaacatccgtgtccgctctgtgaca
ggcgtcggcttctacatgcccatggggaggatcaaggggaccctgtcatcaaggttcctg
atggtggacggtgacaaagtggccactggatcttacaggttcacctggagttcctcccat
gtggacagaaacctcctcctgctcctgacaggacagaacgtagagccctttgacacggag
ttccgggagctgtacgccatctccgaggaggtggacttgtaccggcagctgagcctggcg
ggcagggttggcctccattactcctccactgtggctcgaaagcttatcaaccccaagtac
gccttggtgtcaggctgccgccacccgcctggggagatgatgcgctgggctgcccggcaa
cagcgggaggcgggcggcaacccggaggggcaggaggagggcgccagcggtggcgagtcg
gcctggcgcctggagagcttcctgaaagacctggttacggtggagcaggtgctgcccccc
gtggagcccatccccttgggagagctgagccagaaggatggcaggatggtctctcacatg
cacagagacctgaagcccaaatcccgagaggcacccagccgaaacggcatgggagaagcg
gcccggggggaggccgcccccgccaggcgcttcagcagcaggctcttcagtcgccgagcc
aagaggcctgcggcgcccaatggcatggccagctctgtctccaccgagacctctgaagtg
gagtttctgacggggaagaggcccaacgagaattccagtgctgacatctcagcagtctct
ggggtggcctttcaggtggctggtggcggtgcctttctcatctctgcatccctgagtcag
gggactttccatggtggggtttctccctccatcgctgtggagcccagtgatgagaactgg
gctctggctggccagagagagagagggaatagtgagggcgagggcacggacagccaggaa
ggtccggggatgcccggaaccatcatcccgttccttgtccgtcctttagacgaacacaga
gcagcctcctccgcagagccgccccagacgtgctcggcaccactgcggaaagtgaccccc
agcgccttggccatggagcccttggggcgcagcctcctgcccaaaggtgggggaacaccc
ttaatgagggtgcagctggatttgtgcctaggcggcctgtggcggaaggagctggaactg
gaccgggaaggccaggttctggcactgtcgctggctggctctgggagctgtgggcacctc
agcggtagaatgcggcagcccgggaggggaaccagagagaaggaccgcagtcttactttg
caggcggtggagctgcatgtactagctggtaatcagcagcttgggagggagacagtgacc
ccagcccctcaactggagatgtggacagcacacagggtaggaactgaagctgaatccacc
aagcgtttcacttacatccttccccgcctctgtcccttgcctctgcaggtggccctggag
agaagccttggagaacttggagaagcccacgcggctggcagcatcatgtttttggggtcc
ccgtgctgctgcaaggcgaaacgggagggagtgacccctgcgcccctcagtcccccctac
gacgtcgcctccatagtctgcggagaagcggagactgcgcgcctcgcctcacagcgaaac
gccgcgcactcggagccggcacggctcggcggtttcaccaccaatgaattccagaaaagt
tttggttttcagaagtttttggattttggaattgtggnn