Result of FASTA (ccds) for pF1KB8638
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8638, 374 aa
  1>>>pF1KB8638 374 - 374 aa - 374 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4159+/-0.000669; mu= 16.0665+/- 0.041
 mean_var=66.1039+/-13.789, 0's: 0 Z-trim(110.1): 143  B-trim: 418 in 1/50
 Lambda= 0.157747
 statistics sampled from 11234 (11396) to 11234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.35), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS11551.1 SPOP gene_id:8405|Hs108|chr17          ( 374) 2515 580.8 6.4e-166
CCDS33298.1 SPOPL gene_id:339745|Hs108|chr2        ( 392) 1932 448.2 5.8e-126
CCDS34609.1 KLHL7 gene_id:55975|Hs108|chr7         ( 586)  279 72.1 1.4e-12
CCDS3245.2 KLHL6 gene_id:89857|Hs108|chr3          ( 621)  272 70.5 4.6e-12
CCDS5378.2 KLHL7 gene_id:55975|Hs108|chr7          ( 538)  265 68.9 1.2e-11
CCDS47418.1 BTBD9 gene_id:114781|Hs108|chr6        ( 612)  258 67.3 4.1e-11
CCDS30575.1 KLHL21 gene_id:9903|Hs108|chr1         ( 597)  254 66.4 7.5e-11


>>CCDS11551.1 SPOP gene_id:8405|Hs108|chr17               (374 aa)
 initn: 2515 init1: 2515 opt: 2515  Z-score: 3092.3  bits: 580.8 E(32554): 6.4e-166
Smith-Waterman score: 2515; 100.0% identity (100.0% similar) in 374 aa overlap (1-374:1-374)

               10        20        30        40        50        60
pF1KB8 MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ
              310       320       330       340       350       360

              370    
pF1KB8 CPFLGPPRKRLKQS
       ::::::::::::::
CCDS11 CPFLGPPRKRLKQS
              370    

>>CCDS33298.1 SPOPL gene_id:339745|Hs108|chr2             (392 aa)
 initn: 2177 init1: 1932 opt: 1932  Z-score: 2374.9  bits: 448.2 E(32554): 5.8e-126
Smith-Waterman score: 2144; 80.6% identity (91.6% similar) in 392 aa overlap (1-374:1-392)

               10        20        30        40        50        60
pF1KB8 MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSG
       ::: :.:: :..::.::.::::::::.::::::::::::::::::::::::.::::::::
CCDS33 MSREPTPPLPGDMSTGPIAESWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQ
        .::.::::::::::::.:::::::::::::::::::::::::::.:::: :::::::::
CCDS33 PSDKMKWCLRVNPKGLDDESKDYLSLYLLLVSCPKSEVRAKFKFSLLNAKREETKAMESQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::... : .:
CCDS33 RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGHTNTNTLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR
       :::::::..::.::::.::::: . : ::::.:::..::::::::.::::::::::::::
CCDS33 VPECRLAEDLGNLWENTRFTDCSFFVRGQEFKAHKSVLAARSPVFNAMFEHEMEESKKNR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE
       :::::..:::::::: :::::.:::::::::.::::::::::::::::::.:::::::::
CCDS33 VEINDLDPEVFKEMMRFIYTGRAPNLDKMADNLLAAADKYALERLKVMCEEALCSNLSVE
              250       260       270       280       290       300

              310       320                         330       340  
pF1KB8 NAAEILILADLHSADQLKTQAVDFINY------------------HASDVLETSGWKSMV
       :.:. :.:::::::.:::.::.::::                   .:.:..::::::::.
CCDS33 NVADTLVLADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNSNQATDIMETSGWKSMI
              310       320       330       340       350       360

            350       360       370    
pF1KB8 VSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS
        :::::::::.:.::::::: .: ::::::::
CCDS33 QSHPHLVAEAFRALASAQCPQFGIPRKRLKQS
              370       380       390  

>>CCDS34609.1 KLHL7 gene_id:55975|Hs108|chr7              (586 aa)
 initn: 297 init1: 273 opt: 279  Z-score: 339.1  bits: 72.1 E(32554): 1.4e-12
Smith-Waterman score: 279; 32.2% identity (64.9% similar) in 174 aa overlap (183-351:23-196)

            160       170       180       190           200        
pF1KB8 DKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSR----FTDCCLCVAG
                                     : .:   . :. .: :    . :  : :  
CCDS34         MAASGVEKSSKKKTEKKLAAREEAKLLAGFMGVMNNMRKQKTLCDVILMVQE
                       10        20        30        40        50  

      210       220       230       240       250       260        
pF1KB8 QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK
       ... ::...::: :  :. ::  .: :::. .::..:.::....... : ::..    ..
CCDS34 RKIPAHRVVLAAASHFFNLMFTTNMLESKSFEVELKDAEPDIIEQLVEFAYTARISVNSN
             60        70        80        90       100       110  

      270       280       290       300       310       320        
pF1KB8 MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYH
        ...:: ::..: .: .: :: : :  .... :   : .::.  .  .::. : :::. :
CCDS34 NVQSLLDAANQYQIEPVKKMCVDFLKEQVDASNCLGISVLAECLDCPELKATADDFIHQH
            120       130       140       150       160       170  

      330       340        350       360       370                 
pF1KB8 ASDVLETSGWKSMVVSH-PHLVAEAYRSLASAQCPFLGPPRKRLKQS             
        ..: .:. . .. :..  ::. .                                    
CCDS34 FTEVYKTDEFLQLDVKRVTHLLNQDTLTVRAEDQVYDAAVRWLKYDEPNRQPFMVDILAK
            180       190       200       210       220       230  

>>CCDS3245.2 KLHL6 gene_id:89857|Hs108|chr3               (621 aa)
 initn: 262 init1: 262 opt: 272  Z-score: 330.1  bits: 70.5 E(32554): 4.6e-12
Smith-Waterman score: 272; 33.5% identity (64.5% similar) in 155 aa overlap (195-349:68-221)

          170       180       190       200       210       220    
pF1KB8 QDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPV
                                     ::. .::  :::  :::. :...::: :  
CCDS32 LVEILNGEKVKFDDAGLSLILQNGLETLRMENA-LTDVILCVDIQEFSCHRVVLAAASNY
        40        50        60        70         80        90      

          230       240       250       260       270       280    
pF1KB8 FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER
       : ::: ....:. ..:. :. :. :... .. . ::.::    . .. .: ::. . . :
CCDS32 FRAMFCNDLKEKYEKRIIIKGVDAETMHTLLDYTYTSKALITKQNVQRVLEAANLFQFLR
        100       110       120       130       140       150      

          290       300       310       320       330       340    
pF1KB8 LKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVS
       .   : . :   :. :: . :: ::: :: :.:: :. ..:  .  ..:..  . .. :.
CCDS32 MVDACASFLTEALNPENCVGILRLADTHSLDSLKKQVQSYIIQNFVQILNSEEFLDLPVD
        160       170       180       190       200       210      

          350       360       370                                  
pF1KB8 HPHLVAEAYRSLASAQCPFLGPPRKRLKQS                              
         : .                                                       
CCDS32 TLHHILKSDDLYVTEEAQVFETVMSWVRHKPSERLCLLPYVLENVRLPLLDPWYFVETVE
        220       230       240       250       260       270      

>>CCDS5378.2 KLHL7 gene_id:55975|Hs108|chr7               (538 aa)
 initn: 286 init1: 262 opt: 265  Z-score: 322.5  bits: 68.9 E(32554): 1.2e-11
Smith-Waterman score: 265; 33.3% identity (68.7% similar) in 147 aa overlap (206-351:2-148)

         180       190       200       210       220       230     
pF1KB8 MNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEE
                                     :  ... ::...::: :  :. ::  .: :
CCDS53                              MVQERKIPAHRVVLAAASHFFNLMFTTNMLE
                                            10        20        30 

         240       250       260       270       280       290     
pF1KB8 SKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCS
       ::. .::..:.::....... : ::..    .. ...:: ::..: .: .: :: : :  
CCDS53 SKSFEVELKDAEPDIIEQLVEFAYTARISVNSNNVQSLLDAANQYQIEPVKKMCVDFLKE
              40        50        60        70        80        90 

         300       310       320       330       340        350    
pF1KB8 NLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSH-PHLVAEAYR
       .... :   : .::.  .  .::. : :::. : ..: .:. . .. :..  ::. .   
CCDS53 QVDASNCLGISVLAECLDCPELKATADDFIHQHFTEVYKTDEFLQLDVKRVTHLLNQDTL
             100       110       120       130       140       150 

          360       370                                            
pF1KB8 SLASAQCPFLGPPRKRLKQS                                        
                                                                   
CCDS53 TVRAEDQVYDAAVRWLKYDEPNRQPFMVDILAKVRFPLISKNFLSKTVQAEPLIQDNPEC
             160       170       180       190       200       210 

>>CCDS47418.1 BTBD9 gene_id:114781|Hs108|chr6             (612 aa)
 initn: 174 init1:  98 opt: 258  Z-score: 313.0  bits: 67.3 E(32554): 4.1e-11
Smith-Waterman score: 258; 29.4% identity (64.4% similar) in 160 aa overlap (186-341:22-181)

         160       170       180       190       200       210     
pF1KB8 TLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHK
                                     :....:.:  . .. :  . :  ..: ::.
CCDS47          MSNSHPLRPFTAVGEIDHVHILSEHIGALLIGEEYGDVTFVVEKKRFPAHR
                        10        20        30        40        50 

         220       230        240       250       260       270    
pF1KB8 AILAARSPVFSAMFEHEMEESK-KNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMAD---
       .:::::   : :..   :.::. . .. ..:.  :.:  .. .::::.:   :.  .   
CCDS47 VILAARCQYFRALLYGGMRESQPEAEIPLQDTTAEAFTMLLKYIYTGRATLTDEKEEVLL
              60        70        80        90       100       110 

             280       290       300       310       320       330 
pF1KB8 DLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASD
       :.:. : ::.. .:.    . ::. :...:.   . .:.:.:  .:  .   :.. .:..
CCDS47 DFLSLAHKYGFPELEDSTSEYLCTILNIQNVCMTFDVASLYSLPKLTCMCCMFMDRNAQE
             120       130       140       150       160       170 

             340       350       360       370                     
pF1KB8 VLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS                 
       :: . :. :.                                                  
CCDS47 VLSSEGFLSLSKTALLNIVLRDSFAAPEKDIFLALLNWCKHNSKENHAEIMQAVRLPLMS
             180       190       200       210       220       230 

>>CCDS30575.1 KLHL21 gene_id:9903|Hs108|chr1              (597 aa)
 initn: 232 init1: 232 opt: 254  Z-score: 308.3  bits: 66.4 E(32554): 7.5e-11
Smith-Waterman score: 254; 33.3% identity (61.8% similar) in 144 aa overlap (190-332:25-168)

     160       170       180       190       200        210        
pF1KB8 EVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAG-QEFQAHKAIL
                                     :. :  . .: :  : .:: ..: ::.:.:
CCDS30       MERPAPLAVLPFSDPAHALSLLRGLSQLRAERKFLDVTLEAAGGRDFPAHRAVL
                     10        20        30        40        50    

      220       230       240       250       260       270        
pF1KB8 AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAAD
       :: :: : :::  ...::. .::... : :.... .. : :::..      :. :: :::
CCDS30 AAASPYFRAMFAGQLRESRAERVRLHGVPPDMLQLLLDFSYTGRVAVSGDNAEPLLRAAD
           60        70        80        90       100       110    

      280       290       300       310       320       330        
pF1KB8 KYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGW
          .  .:  :   : ..:.. :  ..  .:.  : . : . :  ::  :....      
CCDS30 LLQFPAVKEACGAFLQQQLDLANCLDMQDFAEAFSCSGLASAAQRFILRHVGELGAEQLE
          120       130       140       150       160       170    

      340       350       360       370                            
pF1KB8 KSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS                        
                                                                   
CCDS30 RLPLARLLRYLRDDGLCVPKEEAAYQLALRWVRADPPRRAAHWPQLLEAVRLPFVRRFYL
          180       190       200       210       220       230    




374 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:05:33 2016 done: Fri Nov  4 14:05:34 2016
 Total Scan time:  2.720 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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