Result of FASTA (ccds) for
pF1KB8631
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8631, 464 aa
1>>>pF1KB8631 464 - 464 aa - 464 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0367+/-0.000894; mu= 14.0099+/- 0.054
mean_var=76.1797+/-15.093, 0's: 0 Z-trim(107.0): 34 B-trim: 0 in 0/51
Lambda= 0.146945
statistics sampled from 9306 (9335) to 9306 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.287), width: 16
Scan time: 3.020
The best scores are: opt bits E(32554)
CCDS45030.1 CCNA1 gene_id:8900|Hs108|chr13 ( 464) 3091 664.8 5.2e-191
CCDS9357.1 CCNA1 gene_id:8900|Hs108|chr13 ( 465) 3079 662.3 3.1e-190
CCDS45031.1 CCNA1 gene_id:8900|Hs108|chr13 ( 421) 2775 597.8 7e-171
CCDS3723.1 CCNA2 gene_id:890|Hs108|chr4 ( 432) 1149 253.1 4.2e-67
CCDS10170.1 CCNB2 gene_id:9133|Hs108|chr15 ( 398) 605 137.8 2e-32
CCDS3997.1 CCNB1 gene_id:891|Hs108|chr5 ( 433) 572 130.8 2.8e-30
CCDS14331.1 CCNB3 gene_id:85417|Hs108|chrX (1395) 526 121.2 6.8e-27
CCDS14332.1 CCNB3 gene_id:85417|Hs108|chrX ( 291) 387 91.5 1.3e-18
CCDS10467.1 CCNF gene_id:899|Hs108|chr16 ( 786) 387 91.7 3.1e-18
CCDS4863.1 CCND3 gene_id:896|Hs108|chr6 ( 292) 337 80.9 2e-15
CCDS12419.1 CCNE1 gene_id:898|Hs108|chr19 ( 410) 331 79.7 6.4e-15
CCDS34157.1 CCNO gene_id:10309|Hs108|chr5 ( 350) 320 77.3 2.8e-14
CCDS6264.1 CCNE2 gene_id:9134|Hs108|chr8 ( 404) 319 77.1 3.7e-14
CCDS8191.1 CCND1 gene_id:595|Hs108|chr11 ( 295) 308 74.7 1.4e-13
CCDS8524.1 CCND2 gene_id:894|Hs108|chr12 ( 289) 291 71.1 1.7e-12
CCDS12551.2 CNTD2 gene_id:79935|Hs108|chr19 ( 307) 288 70.5 2.8e-12
>>CCDS45030.1 CCNA1 gene_id:8900|Hs108|chr13 (464 aa)
initn: 3091 init1: 3091 opt: 3091 Z-score: 3542.7 bits: 664.8 E(32554): 5.2e-191
Smith-Waterman score: 3091; 99.8% identity (99.8% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KB8 METGFPAIMYPGSFIGGWGEEYLSWEGPGLPDFVFQQPVESEAMHCSNPKSGVVLATVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 METGFPAIMYPGSFIGGWGEEYLSWEGPGLPDFVFQQPVESEAMHCSNPKSGVVLATVAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPDACQILTRAPLGQDPPQRTVLGLLTANGQYRRTCGQGITRIRCYSGSENAFPPAGKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GPDACQILTRAPLGQDPPQRTVLGLLTANGQYRRTCGQGITRIRCYSGSENAFPPAGKKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LPDCGVQEPPKQGFDIYMDELEQGDRDSCSVREGMAFEDVYEVDTGTLKSDLHFLLDFNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LPDCGVQEPPKQGFDIYMDELEQGDRDSCSVREGMAFEDVYEVDTGTLKSDLHFLLDFNT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VSPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VSPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GMRTILVDWLVEVGEEYKLRAETLYLAVNFLVRFLSCMSVLRGKLQLVGTAAMLLASKYE
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS45 GMRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAMLLASKYE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 EIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 ENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAAFTGYSLSEIVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAAFTGYSLSEIVP
370 380 390 400 410 420
430 440 450 460
pF1KB8 CLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
430 440 450 460
>>CCDS9357.1 CCNA1 gene_id:8900|Hs108|chr13 (465 aa)
initn: 2826 init1: 2826 opt: 3079 Z-score: 3528.9 bits: 662.3 E(32554): 3.1e-190
Smith-Waterman score: 3079; 99.6% identity (99.6% similar) in 465 aa overlap (1-464:1-465)
10 20 30 40 50
pF1KB8 METGFPAIMYPGSFIGGWGEEYLSWEGPGLPDFVFQQ-PVESEAMHCSNPKSGVVLATVA
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS93 METGFPAIMYPGSFIGGWGEEYLSWEGPGLPDFVFQQQPVESEAMHCSNPKSGVVLATVA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 RGPDACQILTRAPLGQDPPQRTVLGLLTANGQYRRTCGQGITRIRCYSGSENAFPPAGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 RGPDACQILTRAPLGQDPPQRTVLGLLTANGQYRRTCGQGITRIRCYSGSENAFPPAGKK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 ALPDCGVQEPPKQGFDIYMDELEQGDRDSCSVREGMAFEDVYEVDTGTLKSDLHFLLDFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ALPDCGVQEPPKQGFDIYMDELEQGDRDSCSVREGMAFEDVYEVDTGTLKSDLHFLLDFN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 TVSPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TVSPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDIT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 EGMRTILVDWLVEVGEEYKLRAETLYLAVNFLVRFLSCMSVLRGKLQLVGTAAMLLASKY
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
CCDS93 EGMRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAMLLASKY
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 EEIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 EEIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVR
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB8 TENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAAFTGYSLSEIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAAFTGYSLSEIV
370 380 390 400 410 420
420 430 440 450 460
pF1KB8 PCLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
:::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PCLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
430 440 450 460
>>CCDS45031.1 CCNA1 gene_id:8900|Hs108|chr13 (421 aa)
initn: 2775 init1: 2775 opt: 2775 Z-score: 3181.3 bits: 597.8 E(32554): 7e-171
Smith-Waterman score: 2775; 99.8% identity (99.8% similar) in 421 aa overlap (44-464:1-421)
20 30 40 50 60 70
pF1KB8 FIGGWGEEYLSWEGPGLPDFVFQQPVESEAMHCSNPKSGVVLATVARGPDACQILTRAPL
::::::::::::::::::::::::::::::
CCDS45 MHCSNPKSGVVLATVARGPDACQILTRAPL
10 20 30
80 90 100 110 120 130
pF1KB8 GQDPPQRTVLGLLTANGQYRRTCGQGITRIRCYSGSENAFPPAGKKALPDCGVQEPPKQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GQDPPQRTVLGLLTANGQYRRTCGQGITRIRCYSGSENAFPPAGKKALPDCGVQEPPKQG
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 FDIYMDELEQGDRDSCSVREGMAFEDVYEVDTGTLKSDLHFLLDFNTVSPMLVDSSLLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FDIYMDELEQGDRDSCSVREGMAFEDVYEVDTGTLKSDLHFLLDFNTVSPMLVDSSLLSQ
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 SEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEV
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 GEEYKLRAETLYLAVNFLVRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYI
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS45 GEEYKLRAETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYI
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 TDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLL
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB8 EADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIP
340 350 360 370 380 390
440 450 460
pF1KB8 HRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
:::::::::::::::::::::::::::::::
CCDS45 HRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
400 410 420
>>CCDS3723.1 CCNA2 gene_id:890|Hs108|chr4 (432 aa)
initn: 1065 init1: 699 opt: 1149 Z-score: 1318.2 bits: 253.1 E(32554): 4.2e-67
Smith-Waterman score: 1154; 51.6% identity (71.4% similar) in 409 aa overlap (71-463:39-432)
50 60 70 80 90 100
pF1KB8 SEAMHCSNPKSGVVLATVARGPDACQILTRAPLGQDPPQRTVLGLLTANGQYRRTCGQGI
::. :.: :..:..: . :. : :
CCDS37 PATREAGSALLALQQTALQEDQENINPEKAAPV-QQPRTRAALAVLKS-GNPRGLAQQQR
10 20 30 40 50 60
110 120 130 140 150
pF1KB8 TRIRCYSGSENAFPPAGKKALP--DCGVQEPP-----KQ-GFDIYMDELEQGDRDSCSVR
. : : : :: : : :: :: .: :..:: :. . . .
CCDS37 PKTRRV---------APLKDLPVNDEHVTVPPWKANSKQPAFTIHVDEAEKEAQKKPAES
70 80 90 100 110
160 170 180 190 200
pF1KB8 EGMAFEDVYEVDT-----GTLKS--DLHFLLDFNTVSPMLVDSSLLSQSEDISSLGTDVI
. . ::. .. : : : . .: . :: .: :.. ..: : :
CCDS37 QKIEREDALAFNSAISLPGPRKPLVPLDYPMDGSFESPHTMDMSIILEDEKPVS----VN
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB8 NVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLY
.: .: :.:. :::: :.. .::. :::::::::..::.:::::::::::::::. :::.
CCDS37 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLH
180 190 200 210 220 230
270 280 290 300 310 320
pF1KB8 LAVNFLVRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLK
::::.. :::: :::::::::::::::::::::.:::::::: ::::::::::::.:.:.
CCDS37 LAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLR
240 250 260 270 280 290
330 340 350 360 370 380
pF1KB8 MEHLLLKVLAFDLTVPTTNQFLLQY-LRRQGVCVRTENLAKYVAELSLLEADPFLKYLPS
::::.::::.:::..::.:::: :: :..: . ..:.:: ...::::..:::.::::::
CCDS37 MEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPS
300 310 320 330 340 350
390 400 410 420 430 440
pF1KB8 LIAAAAFCLANYTVNKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQAIREKY
.::.::: :: :::. . :::.: :::.: . ::: .::..:: :.. ::.:::::
CCDS37 VIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY
360 370 380 390 400 410
450 460
pF1KB8 KASKYLCVSLMEPPAVLLLQ
: ::: :::..:: .: :
CCDS37 KNSKYHGVSLLNPPETLNL
420 430
>>CCDS10170.1 CCNB2 gene_id:9133|Hs108|chr15 (398 aa)
initn: 575 init1: 417 opt: 605 Z-score: 695.4 bits: 137.8 E(32554): 2e-32
Smith-Waterman score: 605; 39.3% identity (70.7% similar) in 270 aa overlap (189-455:112-379)
160 170 180 190 200 210
pF1KB8 DVYEVDTGTLKSDLHFLLDFNTVSPMLVDSSLLSQSEDISSLGTDVINV-TEYAEEIYQY
.:: . :::.. . .. ..:...::::
CCDS10 QMEKLAPKGPSPTPEDVSMKEENLCQAFSDALLCKIEDIDNEDWENPQLCSDYVKDIYQY
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB8 LREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLVRFLSC
::. :. . . :.. . ::. ::.:::::::.: ...: ::::. :... :::.
CCDS10 LRQLEVLQSINPHFLDGR-DINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQV
150 160 170 180 190 200
280 290 300 310 320 330
pF1KB8 MSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFD
. : : :::::: .:.::::::::.. :....::::::..::. :. .:: :.:: : :.
CCDS10 QPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFE
210 220 230 240 250 260
340 350 360 370 380 390
pF1KB8 LTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYT
: : .:: . . : :. ..::::. ::.:.. : ...: :: .:::: ::.. .
CCDS10 LGRPLPLHFLRRASKAGEVDVEQHTLAKYLMELTLIDYD-MVHYHPSKVAAAASCLSQKV
270 280 290 300 310
400 410 420 430 440 450
pF1KB8 VNKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQ--AIREKYKASKYLCVSLM
... : .:::. .:.. .... : . . . . ::..:: .:: : .:..
CCDS10 LGQGKWNLKQQYYTGYTENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKLLKISMI
320 330 340 350 360 370
460
pF1KB8 EPPAVLLLQ
CCDS10 PQLNSKAVKDLASPLIGRS
380 390
>>CCDS3997.1 CCNB1 gene_id:891|Hs108|chr5 (433 aa)
initn: 508 init1: 393 opt: 572 Z-score: 657.1 bits: 130.8 E(32554): 2.8e-30
Smith-Waterman score: 572; 36.5% identity (69.2% similar) in 266 aa overlap (201-464:161-424)
180 190 200 210 220 230
pF1KB8 DLHFLLDFNTVSPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAH
:.: .::...:: :::. : .. . .
CCDS39 ETSGCAPAEEDLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYLRQLEEEQAVRPK
140 150 160 170 180 190
240 250 260 270 280 290
pF1KB8 YMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLVRFLSCMSVLRGKLQLVGT
:. . ..: .::.::.::::.: ...: ::.:..:... ::.. : . :::::.
CCDS39 YLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGV
200 210 220 230 240
300 310 320 330 340 350
pF1KB8 AAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQY
.::..::::::.::::. .:...::.::::.:. .:: .:..: : : : .:: .
CCDS39 TAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRA
250 260 270 280 290 300
360 370 380 390 400 410
pF1KB8 LRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAAF
. : :. ..::::. ::..:. : .... :: :::.::::: ... : :: .
CCDS39 SKIGEVDVEQHTLAKYLMELTMLDYD-MVHFPPSQIAAGAFCLALKILDNGEWTPTLQHY
310 320 330 340 350 360
420 430 440 450 460
pF1KB8 TGYSLSEIVPCLSELHKAYLDIPH--RPQQAIREKYKASKYLCVSLMEPPAVLLLQ
.:. ..: ...: : . . . ......:: .::. .: . :.:
CCDS39 LSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLPQLNSALVQDLAK
370 380 390 400 410 420
CCDS39 AVAKV
430
>>CCDS14331.1 CCNB3 gene_id:85417|Hs108|chrX (1395 aa)
initn: 432 init1: 385 opt: 526 Z-score: 596.3 bits: 121.2 E(32554): 6.8e-27
Smith-Waterman score: 526; 35.1% identity (65.3% similar) in 285 aa overlap (181-464:1099-1379)
160 170 180 190 200
pF1KB8 VREGMAFEDVYEVDTGTLKSDLHFLLDFNTVSPMLVDS-SLLSQSEDISSLGTDVINVTE
:::. . . .. :::. ..:
CCDS14 EKSSIATMTSVGKSRTTTESSACESASDKPVSPQAKGTPKEITPREDIDEDSSDPSFNPM
1070 1080 1090 1100 1110 1120
210 220 230 240 250 260
pF1KB8 YAEEIYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVN
::.::..:..: : .. . ::..: .:: ::.::::::::: ... :::::::.
CCDS14 YAKEIFSYMKERE-EQFILTDYMNRQIEITSDMRAILVDWLVEVQVSFEMTHETLYLAVK
1130 1140 1150 1160 1170 1180
270 280 290 300 310 320
pF1KB8 FLVRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHL
.. .: . ::::.:..:...:.:.:: :.::.:::: ::.: . ..:.::
CCDS14 LVDLYLMKAVCKKDKLQLLGATAFMIAAKFEEHNSPRVDDFVYICDDNYQRSEVLSMEIN
1190 1200 1210 1220 1230 1240
330 340 350 360 370 380
pF1KB8 LLKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAA
.:.:: :...: . .:: .: : . ..: .:..:. :..: : ... : .:::
CCDS14 ILNVLKCDINIPIAYHFLRRYARCIHTNMKTLTLSRYICEMTLQEYH-YVQEKASKLAAA
1250 1260 1270 1280 1290 1300
390 400 410 420 430 440
pF1KB8 AFCLANYTVNKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQAIREKYKASKY
.. :: : . .: : ..:::.::. : . .:.: . .:. ::. .
CCDS14 SLLLALYMKKLGYWVPFLEHYSGYSISELHPLVRQLNKLLTFSSYDSLKAVYYKYSHPVF
1310 1320 1330 1340 1350 1360
450 460
pF1KB8 LCVSLMEPPAVLLLQ
. :. . ::. .:.
CCDS14 FEVAKI--PALDMLKLEEILNCDCEAQGLVL
1370 1380 1390
>>CCDS14332.1 CCNB3 gene_id:85417|Hs108|chrX (291 aa)
initn: 281 init1: 281 opt: 387 Z-score: 447.8 bits: 91.5 E(32554): 1.3e-18
Smith-Waterman score: 387; 32.2% identity (64.8% similar) in 236 aa overlap (232-464:46-275)
210 220 230 240 250
pF1KB8 TDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEGM---RTILVDWLVEVGEEYK
....:. .: :. . : :..:. ..
CCDS14 KSQSSKIVPSHHDPSEKTGENCQTKISPSSLQESPSSLQGALKKRSAFED-LTNVS--FE
20 30 40 50 60 70
260 270 280 290 300 310
pF1KB8 LRAETLYLAVNFLVRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTY
. :::::::... .: . ::::.:..:...:.:.:: :.::.:::: ::.:
CCDS14 MTHETLYLAVKLVDLYLMKAVCKKDKLQLLGATAFMIAAKFEEHNSPRVDDFVYICDDNY
80 90 100 110 120 130
320 330 340 350 360 370
pF1KB8 TKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPF
. ..:.:: .:.:: :...: . .:: .: : . ..: .:..:. :..: : .
CCDS14 QRSEVLSMEINILNVLKCDINIPIAYHFLRRYARCIHTNMKTLTLSRYICEMTLQEYH-Y
140 150 160 170 180 190
380 390 400 410 420 430
pF1KB8 LKYLPSLIAAAAFCLANYTVNKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQ
.. : .:::.. :: : . .: : ..:::.::. : . .:.: . .
CCDS14 VQEKASKLAAASLLLALYMKKLGYWVPFLEHYSGYSISELHPLVRQLNKLLTFSSYDSLK
200 210 220 230 240 250
440 450 460
pF1KB8 AIREKYKASKYLCVSLMEPPAVLLLQ
:. ::. .. :. . ::. .:.
CCDS14 AVYYKYSHPVFFEVAKI--PALDMLKLEEILNCDCEAQGLVL
260 270 280 290
>>CCDS10467.1 CCNF gene_id:899|Hs108|chr16 (786 aa)
initn: 294 init1: 294 opt: 387 Z-score: 441.0 bits: 91.7 E(32554): 3.1e-18
Smith-Waterman score: 387; 27.4% identity (57.9% similar) in 340 aa overlap (127-456:200-529)
100 110 120 130 140 150
pF1KB8 GQGITRIRCYSGSENAFPPAGKKALPDCGVQEPPKQGFDIYMDELEQGDRDSCSVREGMA
.: .:. :.. . .:: : . .
CCDS10 ESLRAECQLQRTHKASILHCLGRVLSLFEDEEKQQQAHDLFEEAAHQG----CLTSSYLL
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 FEDVYEVDTGTLKSDLH-F--LLDFNTVSPMLVDSSLLSQSEDISSLGTDVINVTEYAEE
.:. ..:.. :: : : :. . . .. :: . . ..:: .: .: . .
CCDS10 WESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLEVRASSEIVCQ
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 IYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLVR
..: . . : . .. : ... :: ::.::::::. . . :.:.:. . :
CCDS10 LFQASQAVS-----KQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDR
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB8 FLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKV
.: : : .:::.: : :.. ... . : :..::.:: ..:..: ....
CCDS10 YLRRRLVPRYRLQLLGIACMVICTRFISKEILTIREAVWLTDNTYKYEDLVRMMGEIVSA
350 360 370 380 390 400
340 350 360 370 380 390
pF1KB8 LAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCL
: . :::. .. : : .::..: ... :::::... . : :. .::::. :
CCDS10 LEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTS-LSAYAPARLAAAALLL
410 420 430 440 450
400 410 420 430 440
pF1KB8 ANYTVNK-HFWPETLAAFTGYSLSEIVPCLSELHKAYL--DIPHRPQQ----AIREKYKA
: : .. . : : .::.: ...::. ::: . : :. .: :......
CCDS10 ARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFED
460 470 480 490 500 510
450 460
pF1KB8 SKYLCVSLMEPPAVLLLQ
..: .: :
CCDS10 KRYGEISQEEVLSYSQLCAALGVTQDSPDPPTFLSTGEIHAFLSSPSGRRTKRKRENSLQ
520 530 540 550 560 570
>>CCDS4863.1 CCND3 gene_id:896|Hs108|chr6 (292 aa)
initn: 258 init1: 258 opt: 337 Z-score: 390.5 bits: 80.9 E(32554): 2e-15
Smith-Waterman score: 337; 33.2% identity (61.5% similar) in 226 aa overlap (212-428:25-250)
190 200 210 220 230 240
pF1KB8 SPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKK-QPDITE
... : : . : :. :.: :.. : .:
CCDS48 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKP
10 20 30 40 50
250 260 270 280 290 300
pF1KB8 GMRTILVDWLVEVGEEYKLRAETLYLAVNFLVRFLSCMSVLRGKLQLVGTAAMLLASKYE
:: .:. :..:: :: . . :.. ::.:.: :.:::. . ...:::.:.. :::::: .
CCDS48 HMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLR
60 70 80 90 100 110
310 320 330 340 350 360
pF1KB8 EIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRT
: : .... :: . . ::: : :.: : .::.. ...:: :.: ..
CCDS48 ETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDR
120 130 140 150 160 170
370 380 390 400 410
pF1KB8 ENLAKYVAE--LSLLEAD-PFLKYLPSLIA-----AAAFCLANYTVNKHFWPETLAAFTG
. :.: :. :.: .: : : ::.:: ::. :. ... : ::..::
CCDS48 QALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITG
180 190 200 210 220 230
420 430 440 450 460
pF1KB8 YSLSEIVPCLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
.. . : ... :
CCDS48 TEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL
240 250 260 270 280 290
464 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:59:32 2016 done: Fri Nov 4 13:59:32 2016
Total Scan time: 3.020 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]