Result of FASTA (omim) for pF1KB8624
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8624, 350 aa
  1>>>pF1KB8624 350 - 350 aa - 350 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3621+/-0.00034; mu= 16.7147+/- 0.021
 mean_var=73.4827+/-14.490, 0's: 0 Z-trim(115.1): 12  B-trim: 134 in 1/53
 Lambda= 0.149617
 statistics sampled from 25367 (25377) to 25367 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.298), width:  16
 Scan time:  6.840

The best scores are:                                      opt bits E(85289)
NP_056203 (OMIM: 609775) protein YIPF3 [Homo sapie ( 350) 2298 505.1 9.2e-143
XP_005249047 (OMIM: 609775) PREDICTED: protein YIP ( 315) 2057 453.1 3.8e-127
XP_011512760 (OMIM: 609775) PREDICTED: protein YIP ( 315) 2057 453.1 3.8e-127
XP_005249046 (OMIM: 609775) PREDICTED: protein YIP ( 315) 2057 453.1 3.8e-127


>>NP_056203 (OMIM: 609775) protein YIPF3 [Homo sapiens]   (350 aa)
 initn: 2298 init1: 2298 opt: 2298  Z-score: 2684.1  bits: 505.1 E(85289): 9.2e-143
Smith-Waterman score: 2298; 99.7% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KB8 MATTAAPAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MATTAAPAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EVDADAADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EVDADAADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YFDVEPAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 YFDVEPAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQVLALLGYGLFGHCIVLFITYNIH
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_056 GTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVV
              250       260       270       280       290       300

              310       320       330       340       350
pF1KB8 EGILDTLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EGILDTLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
              310       320       330       340       350

>>XP_005249047 (OMIM: 609775) PREDICTED: protein YIPF3 i  (315 aa)
 initn: 2057 init1: 2057 opt: 2057  Z-score: 2403.6  bits: 453.1 E(85289): 3.8e-127
Smith-Waterman score: 2057; 99.7% identity (100.0% similar) in 315 aa overlap (36-350:1-315)

          10        20        30        40        50        60     
pF1KB8 APAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREEEVDAD
                                     ::::::::::::::::::::::::::::::
XP_005                               MENMDDTSGSSFEDMGELHQRLREEEVDAD
                                             10        20        30

          70        80        90       100       110       120     
pF1KB8 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
               40        50        60        70        80        90

         130       140       150       160       170       180     
pF1KB8 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
              100       110       120       130       140       150

         190       200       210       220       230       240     
pF1KB8 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQVLALLGYGLFGHCIVLFITYNIHLHALF
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_005 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIHLHALF
              160       170       180       190       200       210

         250       260       270       280       290       300     
pF1KB8 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
              220       230       240       250       260       270

         310       320       330       340       350
pF1KB8 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
       :::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
              280       290       300       310     

>>XP_011512760 (OMIM: 609775) PREDICTED: protein YIPF3 i  (315 aa)
 initn: 2057 init1: 2057 opt: 2057  Z-score: 2403.6  bits: 453.1 E(85289): 3.8e-127
Smith-Waterman score: 2057; 99.7% identity (100.0% similar) in 315 aa overlap (36-350:1-315)

          10        20        30        40        50        60     
pF1KB8 APAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREEEVDAD
                                     ::::::::::::::::::::::::::::::
XP_011                               MENMDDTSGSSFEDMGELHQRLREEEVDAD
                                             10        20        30

          70        80        90       100       110       120     
pF1KB8 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
               40        50        60        70        80        90

         130       140       150       160       170       180     
pF1KB8 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
              100       110       120       130       140       150

         190       200       210       220       230       240     
pF1KB8 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQVLALLGYGLFGHCIVLFITYNIHLHALF
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_011 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIHLHALF
              160       170       180       190       200       210

         250       260       270       280       290       300     
pF1KB8 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
              220       230       240       250       260       270

         310       320       330       340       350
pF1KB8 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
       :::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
              280       290       300       310     

>>XP_005249046 (OMIM: 609775) PREDICTED: protein YIPF3 i  (315 aa)
 initn: 2057 init1: 2057 opt: 2057  Z-score: 2403.6  bits: 453.1 E(85289): 3.8e-127
Smith-Waterman score: 2057; 99.7% identity (100.0% similar) in 315 aa overlap (36-350:1-315)

          10        20        30        40        50        60     
pF1KB8 APAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREEEVDAD
                                     ::::::::::::::::::::::::::::::
XP_005                               MENMDDTSGSSFEDMGELHQRLREEEVDAD
                                             10        20        30

          70        80        90       100       110       120     
pF1KB8 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
               40        50        60        70        80        90

         130       140       150       160       170       180     
pF1KB8 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
              100       110       120       130       140       150

         190       200       210       220       230       240     
pF1KB8 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQVLALLGYGLFGHCIVLFITYNIHLHALF
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_005 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIHLHALF
              160       170       180       190       200       210

         250       260       270       280       290       300     
pF1KB8 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
              220       230       240       250       260       270

         310       320       330       340       350
pF1KB8 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
       :::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
              280       290       300       310     




350 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:43:24 2016 done: Fri Nov  4 13:43:25 2016
 Total Scan time:  6.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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